Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001992.1

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Reverse (-)

37414 .. 41259

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001992.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggctattctctctgctaacctggcctcttctgctgcacttgcattgatactagtagcggcttcgctgtgtctgattgaagccaaacaatttggaattgggattgaaattggaagcagaggaaggccaaggcagagagagtttgattactttaacttggccttacaatggcctggaacctactgtcaacgcacccgttattgctgccccaacaacgcctgctgccgaggctcaaattctcccgctgtgttcacaatccatggattgtggcctgactacaatgatggaagctggcctgcctgttgcacaaagaagagttttgatgaaaaagagatctcaacattgcttgaccccttggagaaatactggccctcattaagttgtggtaaaccatcatcctgccatggtggaaaaggatccttttggggtcatgagtgggagaagcatgggacttgctccgctccagtaactggagatgaatacaactactttttgacgaccctcaatgtgtattttaaatacaacgtcacaaaagtcctgaatgaagcaggatatgtaccttctaatactgaaaaatatcctcttggaggcattgtttctgccattcagaatgctttccatgcaaccccaaagttggtttgcagaaatggtgctgtggaggaacttcatctttgcttctacaaggatttcaagccccgggattgtgcaggcggatctagcagttcaagtgacatgttattttctagtagctcatgtccacattacatcagcttaccagcatatgcatcactgggggctggcaatgtggaaagtgaggtttcgtgggtgcctgaggatgttctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

281

Amino Acids

30.77

Weight (kDa)

6.16

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	826
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	461
AciI	CCGC	4 cut(s)	59, 243, 459, 711
AclWI	GGATC	3 cut(s)	411, 424, 721
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	4 cut(s)	168, 470, 587, 634
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	4 cut(s)	80, 107, 691, 726
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	2 cut(s)	21, 172
AluBI	AGCT	3 cut(s)	291, 750, 771
AluI	AGCT	3 cut(s)	291, 750, 771
AlwI	GGATC	3 cut(s)	411, 424, 721
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	7 cut(s)	24, 125, 159, 170, 269, 293, 368
ApeKI	GCWGC	3 cut(s)	35, 204, 222
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	2 cut(s)	697, 698
AvaI	CYCGRG	1 cut(s)	696
AxyI	CCTNAGG	1 cut(s)	831
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	826
BbvI	GCAGC	3 cut(s)	22, 191, 209
BccI	CCATC	2 cut(s)	278, 400
BciT130I	CCWGG	2 cut(s)	23, 174
BcnI	CCSGG	2 cut(s)	697, 698
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	3 cut(s)	53, 717, 744
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	4 cut(s)	36, 60, 205, 223
BlsI	GCNGC	4 cut(s)	37, 61, 206, 224
Bme1390I	CCNGG	4 cut(s)	23, 174, 697, 698
BmeT110I	CYCGRG	1 cut(s)	696
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	178, 418, 828
BmrFI	CCNGG	4 cut(s)	23, 174, 697, 698
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	800
BpmI	CTGGAG	2 cut(s)	447, 492
BpuMI	CCSGG	2 cut(s)	697, 698
BsaJI	CCNNGG	7 cut(s)	128, 226, 259, 354, 403, 695, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 470, 587, 634
Bse1I	ACTGG	4 cut(s)	371, 464, 475, 795
Bse21I	CCTNAGG	1 cut(s)	831
Bse3DI	GCAATG	2 cut(s)	341, 808
BseBI	CCWGG	2 cut(s)	23, 174
BseDI	CCNNGG	7 cut(s)	128, 226, 259, 354, 403, 695, 696
BseGI	GGATG	2 cut(s)	395, 841
BseLI	CCNNNNNNNGG	4 cut(s)	168, 470, 587, 634
BseMI	GCAATG	2 cut(s)	341, 808
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	4 cut(s)	371, 464, 475, 795
BseXI	GCAGC	3 cut(s)	22, 191, 209
BsgI	GTGCAG	2 cut(s)	21, 726
BshFI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BshNI	GGYRCC	1 cut(s)	826
BsiHKCI	CYCGRG	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	697
BslFI	GGGAC	1 cut(s)	463
BslI	CCNNNNNNNGG	4 cut(s)	168, 470, 587, 634
BsmFI	GGGAC	1 cut(s)	463
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BsoBI	CYCGRG	1 cut(s)	696
Bsp143I	GATC	3 cut(s)	333, 416, 713
Bsp19I	CCATGG	2 cut(s)	259, 403
BspACI	CCGC	4 cut(s)	59, 243, 459, 711
BspANI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BspCNI	CTCAG	1 cut(s)	823
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	178, 418, 828
BspPI	GGATC	3 cut(s)	411, 424, 721
BspT107I	GGYRCC	1 cut(s)	826
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	341, 808
BsrI	ACTGG	4 cut(s)	371, 464, 475, 795
BssECI	CCNNGG	7 cut(s)	128, 226, 259, 354, 403, 695, 696
BssMI	GATC	3 cut(s)	333, 416, 713
BssT1I	CCWWGG	4 cut(s)	128, 259, 354, 403
Bst2UI	CCWGG	2 cut(s)	23, 174
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	34, 308
BstC8I	GCNNGC	5 cut(s)	220, 293, 297, 709, 799
BstDEI	CTNAG	1 cut(s)	831
BstDSI	CCRYGG	2 cut(s)	259, 403
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	395, 841
BstKTI	GATC	3 cut(s)	336, 419, 716
BstMBI	GATC	3 cut(s)	333, 416, 713
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 32, 41, 228, 620, 717
BstNI	CCWGG	2 cut(s)	23, 174
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	4 cut(s)	21, 172, 695, 696
BstV1I	GCAGC	3 cut(s)	22, 191, 209
BstX2I	RGATCY	3 cut(s)	333, 416, 713
BstYI	RGATCY	3 cut(s)	333, 416, 713
Bsu36I	CCTNAGG	1 cut(s)	831
BsuRI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BtgI	CCRYGG	2 cut(s)	259, 403
BtsCI	GGATG	2 cut(s)	395, 841
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	5 cut(s)	220, 293, 297, 709, 799
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	369
Cfr9I	CCCGGG	1 cut(s)	696
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	7 cut(s)	260, 404, 431, 446, 620, 733, 753
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	1 cut(s)	831
DpnI	GATC	3 cut(s)	335, 418, 715
DpnII	GATC	3 cut(s)	333, 416, 713
DraI	TTTAAA	1 cut(s)	517
Eam1104I	CTCTTC	2 cut(s)	34, 308
EarI	CTCTTC	2 cut(s)	34, 308
EciI	GGCGGA	1 cut(s)	726
Eco130I	CCWWGG	4 cut(s)	128, 259, 354, 403
Eco81I	CCTNAGG	1 cut(s)	831
Eco88I	CYCGRG	1 cut(s)	696
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	21, 172
EcoT14I	CCWWGG	4 cut(s)	128, 259, 354, 403
EcoT22I	ATGCAT	1 cut(s)	787
ErhI	CCWWGG	4 cut(s)	128, 259, 354, 403
FaeI	CATG	7 cut(s)	263, 407, 434, 449, 623, 736, 756
FaqI	GGGAC	1 cut(s)	463
FatI	CATG	7 cut(s)	259, 403, 430, 445, 619, 732, 752
FauI	CCCGC	1 cut(s)	250
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	36, 60, 205, 223
FokI	GGATG	1 cut(s)	382
Fsp4HI	GCNGC	4 cut(s)	36, 60, 205, 223
FspBI	CTAG	3 cut(s)	53, 717, 744
GluI	GCNGC	4 cut(s)	36, 60, 205, 223
GsuI	CTGGAG	2 cut(s)	447, 492
HaeIII	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
HapII	CCGG	1 cut(s)	697
Hin1II	CATG	7 cut(s)	263, 407, 434, 449, 623, 736, 756
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	697
Hpy166II	GTNNAC	4 cut(s)	188, 252, 389, 758
Hpy188I	TCNGA	2 cut(s)	75, 609
Hpy188III	TCNNGA	2 cut(s)	431, 538
Hpy8I	GTNNAC	4 cut(s)	188, 252, 389, 758
HpyAV	CCTTC	2 cut(s)	117, 570
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	7 cut(s)	38, 44, 306, 623, 642, 707, 785
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 32, 41, 228, 620, 717
HpyF3I	CTNAG	1 cut(s)	831
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	7 cut(s)	263, 407, 434, 449, 623, 736, 756
Kzo9I	GATC	3 cut(s)	333, 416, 713
LmnI	GCTCC	2 cut(s)	461, 466
Lsp1109I	GCAGC	3 cut(s)	22, 191, 209
LweI	GCATC	1 cut(s)	794
MaeI	CTAG	3 cut(s)	53, 717, 744
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	466, 526, 728
MalI	GATC	3 cut(s)	335, 418, 715
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	3 cut(s)	333, 416, 713
MboII	GAAGA	2 cut(s)	21, 325
MflI	RGATCY	3 cut(s)	333, 416, 713
MluCI	AATT	4 cut(s)	89, 96, 108, 235
Mph1103I	ATGCAT	1 cut(s)	787
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	3 cut(s)	153, 377, 516
MspA1I	CMGCKG	1 cut(s)	245
MspI	CCGG	1 cut(s)	697
MspR9I	CCNGG	4 cut(s)	23, 174, 697, 698
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	2 cut(s)	23, 174
MwoI	GCNNNNNNNGC	6 cut(s)	23, 32, 41, 228, 620, 717
NciI	CCSGG	2 cut(s)	697, 698
NcoI	CCATGG	2 cut(s)	259, 403
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	3 cut(s)	333, 416, 713
NlaIII	CATG	7 cut(s)	263, 407, 434, 449, 623, 736, 756
NlaIV	GGNNCC	3 cut(s)	178, 418, 828
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	2 cut(s)	526, 728
NsiI	ATGCAT	1 cut(s)	787
NspI	RCATGY	1 cut(s)	736
PagI	TCATGA	1 cut(s)	430
PciI	ACATGT	1 cut(s)	732
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	614
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	37, 61, 206, 224
PscI	ACATGT	1 cut(s)	732
Psp6I	CCWGG	2 cut(s)	21, 172
PspGI	CCWGG	2 cut(s)	21, 172
PspN4I	GGNNCC	3 cut(s)	178, 418, 828
PspPI	GGNCC	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	333, 416, 713
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	153, 377, 516
SatI	GCNGC	4 cut(s)	36, 60, 205, 223
Sau3AI	GATC	3 cut(s)	333, 416, 713
Sau96I	GGNCC	1 cut(s)	369
ScrFI	CCNGG	4 cut(s)	23, 174, 697, 698
SetI	ASST	8 cut(s)	24, 182, 293, 528, 562, 752, 773, 819
SfaNI	GCATC	1 cut(s)	794
SmaI	CCCGGG	1 cut(s)	698
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	4 cut(s)	89, 96, 108, 235
SsiI	CCGC	4 cut(s)	59, 243, 459, 711
SspMI	CTAG	3 cut(s)	53, 717, 744
StyD4I	CCNGG	4 cut(s)	21, 172, 695, 696
StyI	CCWWGG	4 cut(s)	128, 259, 354, 403
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	528
TasI	AATT	4 cut(s)	89, 96, 108, 235
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	153, 377, 516
Tru9I	TTAA	3 cut(s)	153, 377, 516
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	2 cut(s)	526, 728
TseI	GCWGC	3 cut(s)	35, 204, 222
Tsp45I	GTSAC	2 cut(s)	526, 728
TspDTI	ATGAA	4 cut(s)	339, 492, 558, 656
TspMI	CCCGGG	1 cut(s)	696
TspRI	CASTG	1 cut(s)	795
Van91I	CCANNNNNTGG	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	736
XmaI	CCCGGG	1 cut(s)	696
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	3 cut(s)	53, 717, 744
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.