Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Reverse (-)

18208190 .. 18209980

Gene Structure 1791 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g14660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTTCATAAATATCAAAGCGTGCCCATTCGGGGCTTTTTCCCGTTCGCCCAACTGCCCAAGTAACCTGACGAATCTACCCTTAACCGCCCCTATAAATCACACCAGACGCTCCGAAAATCAAACAAGCTCTCCCATCTCTTCAAAAATGGCTATTCTCTCTGCTCAATTCGCCTCTGCAGTAGCACTGATTGCGGTGGCCGCTTCTCTGTGCCTGATCGACGCCAAGCCAGCCGGAATCGGAATCGAAATCGGAAGCAGAGGAGGAGGAGGGCAGAGGGAGTTCGATTACTTCAACTTGGCCCTGCAATGGCCTGGCACTTTCTGTCAGCGCACCCGCCATTGTTGCTCCTCCAATGCTTGCTGCCGCGGCTCAAATGCTCCAACCATGTTTACAATCCATGGATTGTGGCCTGACTACAATGATGGAACCTGGCCTGCCTGTTGCACACAGAAAACCTTTGCTGATAAAGAGATCTCAACATTGCACGATGCTTTAGATAAATACTGGCCATCCTTAAGCTGTGGTAAACCATCATCCTGCCGTGGTGGAAAAGGATCATTTTGGGGTCATGAACTCAAAGAAGCACGGGACTTGCTCCTCTCCAGTAGTTGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

207

Amino Acids

22.33

Weight (kDa)

8.76

Isoelectric Point (pI)

57.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	95 - 193	2.8e-20	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	612
AccII	CGCG	1 cut(s)	369
AciI	CCGC	6 cut(s)	87, 194, 201, 337, 367, 369
AclWI	GGATC	1 cut(s)	565
AcoI	YGGCCR	2 cut(s)	198, 509
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	3 cut(s)	31, 309, 612
AflII	CTTAAG	1 cut(s)	517
AgsI	TTSAA	2 cut(s)	144, 295
AjnI	CCWGG	2 cut(s)	313, 431
AluBI	AGCT	2 cut(s)	129, 522
AluI	AGCT	2 cut(s)	129, 522
AlwI	GGATC	1 cut(s)	565
AoxI	GGCC	6 cut(s)	198, 300, 311, 410, 434, 509
ApeKI	GCWGC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	301
BaeGI	GKGCMC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	4 cut(s)	143, 419, 520, 541
BceAI	ACGGC	1 cut(s)	528
BciT130I	CCWGG	2 cut(s)	315, 433
BfmI	CTRYAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	517
BglII	AGATCT	1 cut(s)	474
BisI	GCNGC	4 cut(s)	201, 364, 367, 370
BlsI	GCNGC	4 cut(s)	202, 365, 368, 371
Bme1390I	CCNGG	2 cut(s)	315, 433
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	315, 433
BmsI	GCATC	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	589
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	3 cut(s)	367, 400, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 309, 612
Bse1I	ACTGG	2 cut(s)	512, 606
Bse3DI	GCAATG	2 cut(s)	314, 482
BseBI	CCWGG	2 cut(s)	315, 433
BseDI	CCNNGG	3 cut(s)	367, 400, 544
BseGI	GGATG	2 cut(s)	512, 536
BseLI	CCNNNNNNNGG	3 cut(s)	31, 309, 612
BseMI	GCAATG	2 cut(s)	314, 482
BseNI	ACTGG	2 cut(s)	512, 606
BseRI	GAGGAG	5 cut(s)	276, 279, 282, 340, 590
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	369
BshFI	GGCC	6 cut(s)	200, 302, 313, 412, 436, 511
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	1 cut(s)	605
BslI	CCNNNNNNNGG	3 cut(s)	31, 309, 612
BsmFI	GGGAC	1 cut(s)	605
BsnI	GGCC	6 cut(s)	200, 302, 313, 412, 436, 511
Bsp1286I	GDGCHC	1 cut(s)	26
Bsp143I	GATC	3 cut(s)	216, 474, 557
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	6 cut(s)	87, 194, 201, 337, 367, 369
BspANI	GGCC	6 cut(s)	200, 302, 313, 412, 436, 511
BspFNI	CGCG	1 cut(s)	369
BspHI	TCATGA	1 cut(s)	571
BspLI	GGNNCC	1 cut(s)	430
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	1 cut(s)	565
BspTI	CTTAAG	1 cut(s)	517
BsrDI	GCAATG	2 cut(s)	314, 482
BsrI	ACTGG	2 cut(s)	512, 606
BssECI	CCNNGG	3 cut(s)	367, 400, 544
BssMI	GATC	3 cut(s)	216, 474, 557
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	2 cut(s)	315, 433
Bst6I	CTCTTC	1 cut(s)	145
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	517
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	22, 231, 361, 438
BstDSI	CCRYGG	3 cut(s)	367, 400, 544
BstF5I	GGATG	2 cut(s)	512, 536
BstFNI	CGCG	1 cut(s)	369
BstHHI	GCGC	1 cut(s)	333
BstKTI	GATC	3 cut(s)	219, 477, 560
BstMBI	GATC	3 cut(s)	216, 474, 557
BstMWI	GCNNNNNNNGC	6 cut(s)	170, 191, 200, 230, 345, 369
BstNI	CCWGG	2 cut(s)	315, 433
BstSCI	CCNGG	2 cut(s)	313, 431
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	474
BstYI	RGATCY	1 cut(s)	474
BsuRI	GGCC	6 cut(s)	200, 302, 313, 412, 436, 511
BtgI	CCRYGG	3 cut(s)	367, 400, 544
BtsCI	GGATG	2 cut(s)	512, 536
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	4 cut(s)	22, 231, 361, 438
CciI	TCATGA	1 cut(s)	571
CfoI	GCGC	1 cut(s)	333
Cfr13I	GGNCC	1 cut(s)	301
Cfr42I	CCGCGG	1 cut(s)	370
CseI	GACGC	2 cut(s)	117, 230
CviAII	CATG	3 cut(s)	388, 401, 572
DpnI	GATC	3 cut(s)	218, 476, 559
DpnII	GATC	3 cut(s)	216, 474, 557
EaeI	YGGCCR	2 cut(s)	198, 509
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	313, 431
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	3 cut(s)	391, 404, 575
FaiI	YATR	5 cut(s)	8, 95, 389, 402, 573
FaqI	GGGAC	1 cut(s)	605
FatI	CATG	3 cut(s)	387, 400, 571
FauI	CCCGC	1 cut(s)	344
Fnu4HI	GCNGC	4 cut(s)	201, 364, 367, 370
FokI	GGATG	2 cut(s)	499, 523
Fsp4HI	GCNGC	4 cut(s)	201, 364, 367, 370
GlaI	GCGC	1 cut(s)	332
GluI	GCNGC	4 cut(s)	201, 364, 367, 370
GsuI	CTGGAG	1 cut(s)	589
HaeIII	GGCC	6 cut(s)	200, 302, 313, 412, 436, 511
HapII	CCGG	1 cut(s)	234
HgaI	GACGC	2 cut(s)	117, 230
HhaI	GCGC	1 cut(s)	333
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	391, 404, 575
Hin6I	GCGC	1 cut(s)	331
HinP1I	GCGC	1 cut(s)	331
HinfI	GANTC	3 cut(s)	73, 237, 243
HpaII	CCGG	1 cut(s)	234
Hpy166II	GTNNAC	2 cut(s)	393, 530
Hpy188I	TCNGA	3 cut(s)	115, 242, 254
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	2 cut(s)	393, 530
Hpy99I	CGWCG	1 cut(s)	224
HpyCH4V	TGCA	4 cut(s)	179, 307, 447, 487
HpyF10VI	GCNNNNNNNGC	6 cut(s)	170, 191, 200, 230, 345, 369
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	391, 404, 575
HspAI	GCGC	1 cut(s)	331
KspI	CCGCGG	1 cut(s)	370
Kzo9I	GATC	3 cut(s)	216, 474, 557
LmnI	GCTCC	4 cut(s)	116, 353, 385, 603
Lsp1109I	GCAGC	1 cut(s)	350
LweI	GCATC	1 cut(s)	481
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	3 cut(s)	218, 476, 559
MboI	GATC	3 cut(s)	216, 474, 557
MboII	GAAGA	1 cut(s)	132
MflI	RGATCY	1 cut(s)	474
MhlI	GDGCHC	1 cut(s)	26
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	1 cut(s)	167
MluNI	TGGCCA	1 cut(s)	511
MmeI	TCCRAC	2 cut(s)	407, 593
MnlI	CCTC	8 cut(s)	184, 254, 257, 260, 263, 270, 361, 611
Mox20I	TGGCCA	1 cut(s)	511
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	2 cut(s)	83, 518
Msp20I	TGGCCA	1 cut(s)	511
MspA1I	CMGCKG	1 cut(s)	369
MspCI	CTTAAG	1 cut(s)	517
MspI	CCGG	1 cut(s)	234
MspR9I	CCNGG	2 cut(s)	315, 433
MvaI	CCWGG	2 cut(s)	315, 433
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	6 cut(s)	170, 191, 200, 230, 345, 369
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	3 cut(s)	216, 474, 557
NlaIII	CATG	3 cut(s)	391, 404, 575
NlaIV	GGNNCC	1 cut(s)	430
PagI	TCATGA	1 cut(s)	571
PfeI	GAWTC	3 cut(s)	73, 237, 243
PflMI	CCANNNNNTGG	1 cut(s)	612
PkrI	GCNGC	4 cut(s)	202, 365, 368, 371
Psp6I	CCWGG	2 cut(s)	313, 431
PspGI	CCWGG	2 cut(s)	313, 431
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	474
SacII	CCGCGG	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	83, 518
SatI	GCNGC	4 cut(s)	201, 364, 367, 370
Sau3AI	GATC	3 cut(s)	216, 474, 557
Sau96I	GGNCC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	315, 433
SduI	GDGCHC	1 cut(s)	26
SetI	ASST	5 cut(s)	69, 131, 434, 461, 524
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	177
Sfr303I	CCGCGG	1 cut(s)	370
SgrBI	CCGCGG	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	6 cut(s)	87, 194, 201, 337, 367, 369
StyD4I	CCNGG	2 cut(s)	313, 431
StyI	CCWWGG	1 cut(s)	400
TaqI	TCGA	3 cut(s)	219, 246, 285
TasI	AATT	1 cut(s)	167
TauI	GCSGC	3 cut(s)	203, 369, 372
TfiI	GAWTC	3 cut(s)	73, 237, 243
Tru1I	TTAA	2 cut(s)	83, 518
Tru9I	TTAA	2 cut(s)	83, 518
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	1 cut(s)	363
TspDTI	ATGAA	1 cut(s)	588
TspRI	CASTG	1 cut(s)	192
Van91I	CCANNNNNTGG	1 cut(s)	612
Vha464I	CTTAAG	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.