Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Reverse (-)

43896459 .. 43900357

Gene Structure 3899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG251100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCTATTCTCTCTGCTAACCTTGCCTCTTCTGCTGCACTTGCATTGATTCTAGTAGCGGCTTCGCTGTGTCTGATTGAAGCCAAACAATTTGGAATTGGAATTGAAATTGGAAGCAGAGGAAGGCCAAGGCAGAGAGAGTTTGATTACTTTAACTTGGCCTTACAATGGCCTGGAACCTACTGTCAACGCACCCGTTATTGCTGCCCCAACAACGCCTGCTGCCGAGGCTCAAATTCTCCGGCTGTGTTCACAATCCATGGATTGTGGCCTGACTACAATGATGGAAGCTGGCCTGCCTGTTGCACAAAGAAGAGTTTTGATGAAAAAGAGATCTCAACATTGCTTGACCCCTTGGAGAAATACTGGCCCTCATTAAGTTGTGGTAAACCATCATCCTGCCATGGTGGAAAAGGATCCTTTTGGGGTCATGAGTGGGAGAAGCATGGGACTTGCTCCGCTCCAGTAACTGGAGATGAATACAACTACTTTTTGACGACCCTCAATGTGTATTTTAAATACAACGTCACAAAAGTCCTGAATGAAGCAGGATATGTACCTTCTAATACTGAAAAATATCCTCTTGGAGGCATTGTTTCGGCCATTCAGAATGCTTTCCATGCAACCCCAAAGTTGGTTTGCAGAAATGGTGCTGTGGAGGAACTTCATCTTTGCTTCTACAAGGATTTCAAGCCCCGGGATTGTGCGGGTGGATCTAGCAGTTCAAGTGACATGTTATTTTCTGGTAGCTCATGTCCCAATTACATCAGCTTACCAGCATATGCATCACTGGGGGCTGGCAATGTGGAAAGTGAGGTTTCATGGGTGCCTGAGGATGTTGACCTTAGGTGGGTGGACAGGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

288

Amino Acids

31.66

Weight (kDa)

6.08

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	48 - 235	1.6e-50	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	826
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	461
AciI	CCGC	3 cut(s)	59, 459, 707
AclWI	GGATC	3 cut(s)	411, 424, 721
AcoI	YGGCCR	1 cut(s)	600
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	1 cut(s)	558
AfiI	CCNNNNNNNGG	5 cut(s)	168, 470, 587, 634, 850
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	4 cut(s)	80, 107, 691, 726
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	3 cut(s)	291, 750, 771
AluI	AGCT	3 cut(s)	291, 750, 771
AlwI	GGATC	3 cut(s)	411, 424, 721
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	7 cut(s)	125, 159, 170, 269, 293, 368, 600
ApeKI	GCWGC	3 cut(s)	35, 204, 222
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	2 cut(s)	697, 698
AvaI	CYCGRG	1 cut(s)	696
AxyI	CCTNAGG	2 cut(s)	831, 845
BamHI	GGATCC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	826
BbvI	GCAGC	3 cut(s)	22, 191, 209
BccI	CCATC	2 cut(s)	278, 400
BciT130I	CCWGG	1 cut(s)	174
BcnI	CCSGG	2 cut(s)	697, 698
BfaI	CTAG	2 cut(s)	53, 717
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	4 cut(s)	36, 60, 205, 223
BlsI	GCNGC	4 cut(s)	37, 61, 206, 224
Bme1390I	CCNGG	3 cut(s)	174, 697, 698
BmeT110I	CYCGRG	1 cut(s)	696
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	3 cut(s)	178, 418, 828
BmrFI	CCNGG	3 cut(s)	174, 697, 698
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	800
BpmI	CTGGAG	2 cut(s)	447, 492
BpuMI	CCSGG	2 cut(s)	697, 698
BsaJI	CCNNGG	7 cut(s)	128, 226, 259, 354, 403, 695, 696
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	5 cut(s)	168, 470, 587, 634, 850
Bse1I	ACTGG	4 cut(s)	371, 464, 475, 795
Bse21I	CCTNAGG	2 cut(s)	831, 845
Bse3DI	GCAATG	2 cut(s)	341, 808
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	7 cut(s)	128, 226, 259, 354, 403, 695, 696
BseGI	GGATG	2 cut(s)	395, 841
BseLI	CCNNNNNNNGG	5 cut(s)	168, 470, 587, 634, 850
BseMI	GCAATG	2 cut(s)	341, 808
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	4 cut(s)	371, 464, 475, 795
BseXI	GCAGC	3 cut(s)	22, 191, 209
BsgI	GTGCAG	1 cut(s)	21
BshFI	GGCC	7 cut(s)	127, 161, 172, 271, 295, 370, 602
BshNI	GGYRCC	1 cut(s)	826
BsiHKCI	CYCGRG	1 cut(s)	696
BsiSI	CCGG	2 cut(s)	242, 697
BslFI	GGGAC	2 cut(s)	463, 741
BslI	CCNNNNNNNGG	5 cut(s)	168, 470, 587, 634, 850
BsmFI	GGGAC	2 cut(s)	463, 741
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	7 cut(s)	127, 161, 172, 271, 295, 370, 602
BsoBI	CYCGRG	1 cut(s)	696
Bsp143I	GATC	3 cut(s)	333, 416, 713
Bsp19I	CCATGG	2 cut(s)	259, 403
BspACI	CCGC	3 cut(s)	59, 459, 707
BspANI	GGCC	7 cut(s)	127, 161, 172, 271, 295, 370, 602
BspCNI	CTCAG	1 cut(s)	823
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	3 cut(s)	178, 418, 828
BspPI	GGATC	3 cut(s)	411, 424, 721
BspT107I	GGYRCC	1 cut(s)	826
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	341, 808
BsrI	ACTGG	4 cut(s)	371, 464, 475, 795
BssECI	CCNNGG	7 cut(s)	128, 226, 259, 354, 403, 695, 696
BssMI	GATC	3 cut(s)	333, 416, 713
BssT1I	CCWWGG	4 cut(s)	128, 259, 354, 403
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	2 cut(s)	34, 308
BstC8I	GCNNGC	4 cut(s)	220, 293, 297, 799
BstDEI	CTNAG	2 cut(s)	831, 845
BstDSI	CCRYGG	2 cut(s)	259, 403
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	2 cut(s)	395, 841
BstKTI	GATC	3 cut(s)	336, 419, 716
BstMBI	GATC	3 cut(s)	333, 416, 713
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 32, 41, 228, 620
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	3 cut(s)	172, 695, 696
BstV1I	GCAGC	3 cut(s)	22, 191, 209
BstX2I	RGATCY	3 cut(s)	333, 416, 713
BstYI	RGATCY	3 cut(s)	333, 416, 713
Bsu36I	CCTNAGG	2 cut(s)	831, 845
BsuRI	GGCC	7 cut(s)	127, 161, 172, 271, 295, 370, 602
BtgI	CCRYGG	2 cut(s)	259, 403
BtsCI	GGATG	2 cut(s)	395, 841
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	4 cut(s)	220, 293, 297, 799
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	430
Cfr13I	GGNCC	1 cut(s)	369
Cfr9I	CCCGGG	1 cut(s)	696
Csp6I	GTAC	1 cut(s)	557
CviAII	CATG	8 cut(s)	260, 404, 431, 446, 620, 733, 753, 822
CviQI	GTAC	1 cut(s)	557
DdeI	CTNAG	2 cut(s)	831, 845
DpnI	GATC	3 cut(s)	335, 418, 715
DpnII	GATC	3 cut(s)	333, 416, 713
DraI	TTTAAA	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	600
Eam1104I	CTCTTC	2 cut(s)	34, 308
EarI	CTCTTC	2 cut(s)	34, 308
Eco130I	CCWWGG	4 cut(s)	128, 259, 354, 403
Eco81I	CCTNAGG	2 cut(s)	831, 845
Eco88I	CYCGRG	1 cut(s)	696
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	4 cut(s)	128, 259, 354, 403
EcoT22I	ATGCAT	1 cut(s)	787
ErhI	CCWWGG	4 cut(s)	128, 259, 354, 403
FaeI	CATG	8 cut(s)	263, 407, 434, 449, 623, 736, 756, 825
FaqI	GGGAC	2 cut(s)	463, 741
FatI	CATG	8 cut(s)	259, 403, 430, 445, 619, 732, 752, 821
FauI	CCCGC	1 cut(s)	700
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	36, 60, 205, 223
FokI	GGATG	2 cut(s)	382, 848
Fsp4HI	GCNGC	4 cut(s)	36, 60, 205, 223
FspBI	CTAG	2 cut(s)	53, 717
GluI	GCNGC	4 cut(s)	36, 60, 205, 223
GsuI	CTGGAG	2 cut(s)	447, 492
HaeIII	GGCC	7 cut(s)	127, 161, 172, 271, 295, 370, 602
HapII	CCGG	2 cut(s)	242, 697
Hin1II	CATG	8 cut(s)	263, 407, 434, 449, 623, 736, 756, 825
HincII	GTYRAC	2 cut(s)	188, 841
HindII	GTYRAC	2 cut(s)	188, 841
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	2 cut(s)	242, 697
Hpy166II	GTNNAC	5 cut(s)	188, 252, 389, 841, 856
Hpy188I	TCNGA	2 cut(s)	75, 609
Hpy188III	TCNNGA	2 cut(s)	431, 538
Hpy8I	GTNNAC	5 cut(s)	188, 252, 389, 841, 856
HpyAV	CCTTC	2 cut(s)	117, 570
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	6 cut(s)	38, 44, 306, 623, 642, 785
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 32, 41, 228, 620
HpyF3I	CTNAG	2 cut(s)	831, 845
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	8 cut(s)	263, 407, 434, 449, 623, 736, 756, 825
Kzo9I	GATC	3 cut(s)	333, 416, 713
LmnI	GCTCC	2 cut(s)	461, 466
Lsp1109I	GCAGC	3 cut(s)	22, 191, 209
LweI	GCATC	1 cut(s)	794
MaeI	CTAG	2 cut(s)	53, 717
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	466, 526, 728
MalI	GATC	3 cut(s)	335, 418, 715
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	3 cut(s)	333, 416, 713
MboII	GAAGA	2 cut(s)	21, 325
MflI	RGATCY	3 cut(s)	333, 416, 713
MluCI	AATT	6 cut(s)	89, 96, 102, 108, 235, 760
Mph1103I	ATGCAT	1 cut(s)	787
MroXI	GAANNNNTTC	1 cut(s)	614
MseI	TTAA	3 cut(s)	153, 377, 516
MspI	CCGG	2 cut(s)	242, 697
MspR9I	CCNGG	3 cut(s)	174, 697, 698
Mva1269I	GAATGC	1 cut(s)	616
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	5 cut(s)	23, 32, 41, 228, 620
NciI	CCSGG	2 cut(s)	697, 698
NcoI	CCATGG	2 cut(s)	259, 403
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	3 cut(s)	333, 416, 713
NlaIII	CATG	8 cut(s)	263, 407, 434, 449, 623, 736, 756, 825
NlaIV	GGNNCC	3 cut(s)	178, 418, 828
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	2 cut(s)	526, 728
NsiI	ATGCAT	1 cut(s)	787
NspI	RCATGY	1 cut(s)	736
PagI	TCATGA	1 cut(s)	430
PciI	ACATGT	1 cut(s)	732
PctI	GAATGC	1 cut(s)	616
PdmI	GAANNNNTTC	1 cut(s)	614
PfeI	GAWTC	1 cut(s)	49
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	37, 61, 206, 224
PscI	ACATGT	1 cut(s)	732
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	3 cut(s)	178, 418, 828
PspPI	GGNCC	1 cut(s)	369
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	3 cut(s)	333, 416, 713
RsaI	GTAC	1 cut(s)	558
RsaNI	GTAC	1 cut(s)	557
SaqAI	TTAA	3 cut(s)	153, 377, 516
SatI	GCNGC	4 cut(s)	36, 60, 205, 223
Sau3AI	GATC	3 cut(s)	333, 416, 713
Sau96I	GGNCC	1 cut(s)	369
ScrFI	CCNGG	3 cut(s)	174, 697, 698
SfaNI	GCATC	1 cut(s)	794
SmaI	CCCGGG	1 cut(s)	698
Sse9I	AATT	6 cut(s)	89, 96, 102, 108, 235, 760
SsiI	CCGC	3 cut(s)	59, 459, 707
SspMI	CTAG	2 cut(s)	53, 717
StyD4I	CCNGG	3 cut(s)	172, 695, 696
StyI	CCWWGG	4 cut(s)	128, 259, 354, 403
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	528
TasI	AATT	6 cut(s)	89, 96, 102, 108, 235, 760
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	3 cut(s)	153, 377, 516
Tru9I	TTAA	3 cut(s)	153, 377, 516
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	2 cut(s)	526, 728
TseI	GCWGC	3 cut(s)	35, 204, 222
Tsp45I	GTSAC	2 cut(s)	526, 728
TspDTI	ATGAA	5 cut(s)	339, 492, 558, 656, 810
TspMI	CCCGGG	1 cut(s)	696
TspRI	CASTG	1 cut(s)	795
Van91I	CCANNNNNTGG	1 cut(s)	470
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	736
XmaI	CCCGGG	1 cut(s)	696
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	2 cut(s)	53, 717
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.