Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Reverse (-)

14946827 .. 14950664

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17310.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTTTTCTCTCTGCTAAACTGGCCTCCTCCACTTCTGTACTTGCATTGATACTAGTAGCTGCTTCGCTGTGTGTGATCGAAGCCAAACAATTTGGAATTGGAATAGGGAGGCCAAAGCAGAGAGAGTTTGATTATTATAACTTGGCCCTGCAATGGCCTGGGACTTACTGTAAACGCACCCAATATTGCTGCCCCAACAACGCCTGCTGCCGTGGCTCAAATTCTCCGACTGTGTTCACAATCCATGGATTGTGGCCTGACTACAATGATGGAAGCTGGCCTGCCTGTTGCACAAGGAAGACTTTTGATGAGAAAGAGATCTCAACATTGCTCGACCCCTTGGAGAAATATTGGCCATCATTGAGTTGTGGTAAACCATCATCTTGCCATGGTGGAAAAGGATCATTTTGGGGTCATGAGTGGGAGAAGCACGGGACTTGCTCAGCTCCAGTAACAGGAGATGAATACAACTACTTTTTGACAACCCTGAATGTGTATTTTAAATACAATGTCACAGCAGTCCTGAATGAAGCAGGATATGTACCTTCTAATACTGAAAAATATCCTCTTGGAGGCATTGTTTCTGCCATTCAGAACGCTTTCCATGCAACCCCAAAGTTGGTCTGCAGAAATGGTGCTGTGGAGGAACTTCATCTTTGCTTCTACAAGGATTTCAAGCCTCGGGATTGTGCCGGTGCATCTAGCAGTTCAAATGACATGTTGTATTCTAGTAGCTCATGTCCCAATTATATCAGCATACCAGCATATGCATCACTGGTGGAAGGCAATGTGGAAAGTGAGGTTTCATGGGTGCCAGAGGATGTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

278

Amino Acids

30.51

Weight (kDa)

5.88

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	44 - 213	3.6e-40	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	141
AccB1I	GGYRCC	1 cut(s)	814
AclWI	GGATC	1 cut(s)	412
AcoI	YGGCCR	1 cut(s)	356
AcsI	RAATTY	1 cut(s)	223
AfaI	GTAC	2 cut(s)	42, 546
AfiI	CCNNNNNNNGG	4 cut(s)	156, 458, 575, 622
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	2 cut(s)	679, 714
AhlI	ACTAGT	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	4 cut(s)	62, 279, 449, 738
AluI	AGCT	4 cut(s)	62, 279, 449, 738
AlwI	GGATC	1 cut(s)	412
Ama87I	CYCGRG	1 cut(s)	684
AoxI	GGCC	7 cut(s)	24, 113, 147, 158, 257, 281, 356
ApeKI	GCWGC	3 cut(s)	62, 192, 210
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	602
AspS9I	GGNCC	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	684
BalI	TGGCCA	1 cut(s)	358
BanI	GGYRCC	1 cut(s)	814
BbsI	GAAGAC	1 cut(s)	308
BbvI	GCAGC	3 cut(s)	49, 179, 197
BccI	CCATC	3 cut(s)	266, 367, 388
BceAI	ACGGC	1 cut(s)	198
BciT130I	CCWGG	1 cut(s)	162
BcuI	ACTAGT	1 cut(s)	55
BfaI	CTAG	3 cut(s)	56, 705, 732
BfmI	CTRYAG	1 cut(s)	628
BglII	AGATCT	1 cut(s)	321
BisI	GCNGC	3 cut(s)	63, 193, 211
BlpI	GCTNAGC	1 cut(s)	445
BlsI	GCNGC	3 cut(s)	64, 194, 212
Bme1390I	CCNGG	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	684
BmgT120I	GGNCC	1 cut(s)	148
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	2 cut(s)	710, 782
BpiI	GAAGAC	1 cut(s)	308
BpmI	CTGGAG	1 cut(s)	435
Bpu1102I	GCTNAGC	1 cut(s)	445
BsaJI	CCNNGG	6 cut(s)	161, 214, 247, 342, 391, 683
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 458, 575, 622
Bse118I	RCCGGY	1 cut(s)	695
Bse1I	ACTGG	3 cut(s)	27, 452, 783
Bse3DI	GCAATG	3 cut(s)	161, 329, 796
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	6 cut(s)	161, 214, 247, 342, 391, 683
BseGI	GGATG	1 cut(s)	829
BseLI	CCNNNNNNNGG	4 cut(s)	156, 458, 575, 622
BseMI	GCAATG	3 cut(s)	161, 329, 796
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	3 cut(s)	27, 452, 783
BseRI	GAGGAG	1 cut(s)	19
BseXI	GCAGC	3 cut(s)	49, 179, 197
BshFI	GGCC	7 cut(s)	26, 115, 149, 160, 259, 283, 358
BshNI	GGYRCC	1 cut(s)	814
BsiHKCI	CYCGRG	1 cut(s)	684
BsiSI	CCGG	1 cut(s)	696
BslFI	GGGAC	3 cut(s)	178, 451, 729
BslI	CCNNNNNNNGG	4 cut(s)	156, 458, 575, 622
BsmFI	GGGAC	3 cut(s)	178, 451, 729
BsnI	GGCC	7 cut(s)	26, 115, 149, 160, 259, 283, 358
BsoBI	CYCGRG	1 cut(s)	684
Bsp143I	GATC	3 cut(s)	78, 321, 404
Bsp1720I	GCTNAGC	1 cut(s)	445
Bsp19I	CCATGG	2 cut(s)	247, 391
BspANI	GGCC	7 cut(s)	26, 115, 149, 160, 259, 283, 358
BspCNI	CTCAG	1 cut(s)	458
BspHI	TCATGA	1 cut(s)	418
BspLI	GGNNCC	1 cut(s)	816
BspMAI	CTGCAG	1 cut(s)	632
BspPI	GGATC	1 cut(s)	412
BspT107I	GGYRCC	1 cut(s)	814
BsrDI	GCAATG	3 cut(s)	161, 329, 796
BsrFI	RCCGGY	1 cut(s)	695
BsrI	ACTGG	3 cut(s)	27, 452, 783
BssAI	RCCGGY	1 cut(s)	695
BssECI	CCNNGG	6 cut(s)	161, 214, 247, 342, 391, 683
BssMI	GATC	3 cut(s)	78, 321, 404
BssT1I	CCWWGG	3 cut(s)	247, 342, 391
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	173, 235
BstC8I	GCNNGC	3 cut(s)	208, 281, 285
BstDEI	CTNAG	1 cut(s)	445
BstDSI	CCRYGG	3 cut(s)	214, 247, 391
BstENI	CCTNNNNNAGG	1 cut(s)	573
BstF5I	GGATG	1 cut(s)	829
BstKTI	GATC	3 cut(s)	81, 324, 407
BstMBI	GATC	3 cut(s)	78, 321, 404
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 216, 608
BstNI	CCWGG	1 cut(s)	162
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	628
BstV1I	GCAGC	3 cut(s)	49, 179, 197
BstV2I	GAAGAC	1 cut(s)	308
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	7 cut(s)	26, 115, 149, 160, 259, 283, 358
BtgI	CCRYGG	3 cut(s)	214, 247, 391
BtsCI	GGATG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	776
Cac8I	GCNNGC	3 cut(s)	208, 281, 285
CciI	TCATGA	1 cut(s)	418
Cfr10I	RCCGGY	1 cut(s)	695
Cfr13I	GGNCC	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	41, 545
CviAII	CATG	7 cut(s)	248, 392, 419, 608, 721, 741, 810
CviQI	GTAC	2 cut(s)	41, 545
DdeI	CTNAG	1 cut(s)	445
DpnI	GATC	3 cut(s)	80, 323, 406
DpnII	GATC	3 cut(s)	78, 321, 404
DraI	TTTAAA	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	356
Eco130I	CCWWGG	3 cut(s)	247, 342, 391
Eco88I	CYCGRG	1 cut(s)	684
EcoNI	CCTNNNNNAGG	1 cut(s)	573
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	3 cut(s)	247, 342, 391
EcoT22I	ATGCAT	1 cut(s)	775
ErhI	CCWWGG	3 cut(s)	247, 342, 391
FaeI	CATG	7 cut(s)	251, 395, 422, 611, 724, 744, 813
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FaqI	GGGAC	3 cut(s)	178, 451, 729
FatI	CATG	7 cut(s)	247, 391, 418, 607, 720, 740, 809
FauNDI	CATATG	1 cut(s)	769
Fnu4HI	GCNGC	3 cut(s)	63, 193, 211
Fsp4HI	GCNGC	3 cut(s)	63, 193, 211
FspBI	CTAG	3 cut(s)	56, 705, 732
GluI	GCNGC	3 cut(s)	63, 193, 211
GsuI	CTGGAG	1 cut(s)	435
HaeIII	GGCC	7 cut(s)	26, 115, 149, 160, 259, 283, 358
HapII	CCGG	1 cut(s)	696
Hin1II	CATG	7 cut(s)	251, 395, 422, 611, 724, 744, 813
HpaII	CCGG	1 cut(s)	696
Hpy166II	GTNNAC	3 cut(s)	176, 240, 377
Hpy188I	TCNGA	3 cut(s)	231, 597, 833
Hpy188III	TCNNGA	3 cut(s)	419, 526, 686
Hpy8I	GTNNAC	3 cut(s)	176, 240, 377
HpyAV	CCTTC	2 cut(s)	558, 779
HpyCH4III	ACNGT	2 cut(s)	173, 235
HpyCH4V	TGCA	7 cut(s)	47, 154, 294, 611, 630, 701, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 216, 608
HpyF3I	CTNAG	1 cut(s)	445
Hsp92II	CATG	7 cut(s)	251, 395, 422, 611, 724, 744, 813
Kzo9I	GATC	3 cut(s)	78, 321, 404
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	3 cut(s)	49, 179, 197
LweI	GCATC	2 cut(s)	710, 782
MaeI	CTAG	3 cut(s)	56, 705, 732
MaeIII	GTNAC	2 cut(s)	454, 514
MalI	GATC	3 cut(s)	80, 323, 406
MboI	GATC	3 cut(s)	78, 321, 404
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	358
MluCI	AATT	4 cut(s)	92, 99, 223, 748
MluNI	TGGCCA	1 cut(s)	358
MmeI	TCCRAC	1 cut(s)	254
MnlI	CCTC	9 cut(s)	37, 40, 105, 569, 579, 640, 693, 796, 814
Mox20I	TGGCCA	1 cut(s)	358
Mph1103I	ATGCAT	1 cut(s)	775
MroXI	GAANNNNTTC	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	358
MseI	TTAA	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	358
MspI	CCGG	1 cut(s)	696
MspR9I	CCNGG	1 cut(s)	162
MvaI	CCWGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	23, 216, 608
NcoI	CCATGG	2 cut(s)	247, 391
NdeI	CATATG	1 cut(s)	769
NdeII	GATC	3 cut(s)	78, 321, 404
NlaIII	CATG	7 cut(s)	251, 395, 422, 611, 724, 744, 813
NlaIV	GGNNCC	1 cut(s)	816
NmuCI	GTSAC	1 cut(s)	514
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	1 cut(s)	724
PagI	TCATGA	1 cut(s)	418
PciI	ACATGT	1 cut(s)	720
PdmI	GAANNNNTTC	1 cut(s)	602
PkrI	GCNGC	3 cut(s)	64, 194, 212
PscI	ACATGT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	1 cut(s)	816
PspPI	GGNCC	1 cut(s)	148
PstI	CTGCAG	1 cut(s)	632
PsuI	RGATCY	1 cut(s)	321
RsaI	GTAC	2 cut(s)	42, 546
RsaNI	GTAC	2 cut(s)	41, 545
SaqAI	TTAA	1 cut(s)	504
SatI	GCNGC	3 cut(s)	63, 193, 211
Sau3AI	GATC	3 cut(s)	78, 321, 404
Sau96I	GGNCC	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	6 cut(s)	64, 281, 451, 550, 740, 807
SfaNI	GCATC	2 cut(s)	710, 782
SfcI	CTRYAG	1 cut(s)	628
SpeI	ACTAGT	1 cut(s)	55
Sse9I	AATT	4 cut(s)	92, 99, 223, 748
SspI	AATATT	2 cut(s)	188, 353
SspMI	CTAG	3 cut(s)	56, 705, 732
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	3 cut(s)	247, 342, 391
TaaI	ACNGT	2 cut(s)	173, 235
TaqI	TCGA	2 cut(s)	81, 336
TasI	AATT	4 cut(s)	92, 99, 223, 748
TatI	WGTACW	1 cut(s)	40
Tru1I	TTAA	1 cut(s)	504
Tru9I	TTAA	1 cut(s)	504
TscAI	CASTG	1 cut(s)	783
TseFI	GTSAC	1 cut(s)	514
TseI	GCWGC	3 cut(s)	62, 192, 210
Tsp45I	GTSAC	1 cut(s)	514
TspDTI	ATGAA	4 cut(s)	480, 546, 644, 798
TspRI	CASTG	1 cut(s)	783
XagI	CCTNNNNNAGG	1 cut(s)	573
XapI	RAATTY	1 cut(s)	223
XceI	RCATGY	1 cut(s)	724
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	3 cut(s)	56, 705, 732
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.