Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Forward (+)

23990539 .. 23994620

Gene Structure 4082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCTATTCTCTCTGCTAACTTGGCCTCTCCTGTTGCACTTGCATTGATACTAGTAGCGGCTTCGCTGTGTCTGATTGAAGCCAAACAATTTGGAATTGGGATTGAAATTGGAAGCAGAGGAAGGCCGAGGCAGAGAGAGTTTGATTACTTTAACTTGGCCTTACAATGGCCTGGAACCTACTGTCAACGCACCCGTTATTGCTGCCCCAACAACGCCTGCTGCCGAGGCTCAAATTCTCCGGCTGTGTTCACAATCCATGGATTGTGGCCTGACTACAATGATGGAAGCTGGCCTGCCTGTTGCACAAAGAAGAGTTTTGATGAAAAAGAGATCTCAACATTGCTTGACCCCTTGGAGAAATATTGGCCATCCTTAAGTTGTGGTAAACCATCATCCTGCCGTGGTGGAAAAGGATCATTTTGGGGTCATGAGTGGGAGAAGCATGGGACTTGCTCCGCTCCAGTAACTGGAGATGAATACAATTACTTTTTGACGACCCTCAATGTGTATTTTAAATACAACGTTACAAAAGTCCTGAATGAAGCAGGATATGTGCCTTCTAATACTGAAAAATATCCTCTTGGAGGTATTGTTTCAGCCATTCAGAACGCTTTCCATGCAACCCCAAAGTTGGTTTGCAGAAATGGTGCTGTGGAGGAACTTCATCTTTGCTTCTACAAGGATTTCAAGCCTCGGGATTGTGCGGGTGGATCTAGCAGTTCAAGTGACATGTTATTTTCTAGTAGCTCATGTCCCAATTACATCAGCTTACCAGCATATGCATCACTGGGGGCTGGCAATGTGGAAAGTGAGGTTTCATGGGTGCCTGAGGATGTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

282

Amino Acids

30.8

Weight (kDa)

6.22

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	48 - 235	1.5e-50	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	826
AccB7I	CCANNNNNTGG	1 cut(s)	470
AccBSI	CCGCTC	1 cut(s)	461
AciI	CCGC	3 cut(s)	59, 459, 707
AclI	AACGTT	1 cut(s)	525
AclWI	GGATC	2 cut(s)	424, 721
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	235
AfiI	CCNNNNNNNGG	4 cut(s)	168, 470, 587, 634
AflII	CTTAAG	1 cut(s)	376
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	4 cut(s)	80, 107, 691, 726
AhlI	ACTAGT	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	3 cut(s)	291, 750, 771
AluI	AGCT	3 cut(s)	291, 750, 771
AlwI	GGATC	2 cut(s)	424, 721
AlwNI	CAGNNNCTG	1 cut(s)	470
Ama87I	CYCGRG	1 cut(s)	696
AoxI	GGCC	7 cut(s)	24, 125, 159, 170, 269, 293, 368
ApeKI	GCWGC	2 cut(s)	204, 222
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	614
AvaI	CYCGRG	1 cut(s)	696
AxyI	CCTNAGG	1 cut(s)	831
BalI	TGGCCA	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	826
BbvI	GCAGC	2 cut(s)	191, 209
BccI	CCATC	3 cut(s)	278, 379, 400
BceAI	ACGGC	1 cut(s)	387
BciT130I	CCWGG	1 cut(s)	174
BcuI	ACTAGT	1 cut(s)	52
BfaI	CTAG	3 cut(s)	53, 717, 744
BfrI	CTTAAG	1 cut(s)	376
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	3 cut(s)	60, 205, 223
BlsI	GCNGC	3 cut(s)	61, 206, 224
Bme1390I	CCNGG	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	696
BmiI	GGNNCC	2 cut(s)	178, 828
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	1 cut(s)	794
BmuI	ACTGGG	1 cut(s)	800
BpmI	CTGGAG	2 cut(s)	447, 492
BsaJI	CCNNGG	6 cut(s)	128, 226, 259, 354, 403, 695
BsaXI	ACNNNNNCTCC	2 cut(s)	579, 609
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 470, 587, 634
Bse1I	ACTGG	3 cut(s)	464, 475, 795
Bse21I	CCTNAGG	1 cut(s)	831
Bse3DI	GCAATG	2 cut(s)	341, 808
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	6 cut(s)	128, 226, 259, 354, 403, 695
BseGI	GGATG	3 cut(s)	371, 395, 841
BseLI	CCNNNNNNNGG	4 cut(s)	168, 470, 587, 634
BseMI	GCAATG	2 cut(s)	341, 808
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	3 cut(s)	464, 475, 795
BseXI	GCAGC	2 cut(s)	191, 209
BshFI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BshNI	GGYRCC	1 cut(s)	826
BsiHKCI	CYCGRG	1 cut(s)	696
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	463, 741
BslI	CCNNNNNNNGG	4 cut(s)	168, 470, 587, 634
BsmFI	GGGAC	2 cut(s)	463, 741
BsnI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BsoBI	CYCGRG	1 cut(s)	696
Bsp143I	GATC	3 cut(s)	333, 416, 713
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	3 cut(s)	59, 459, 707
BspANI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BspCNI	CTCAG	1 cut(s)	823
BspHI	TCATGA	1 cut(s)	430
BspLI	GGNNCC	2 cut(s)	178, 828
BspPI	GGATC	2 cut(s)	424, 721
BspT107I	GGYRCC	1 cut(s)	826
BspTI	CTTAAG	1 cut(s)	376
BsrBI	CCGCTC	1 cut(s)	461
BsrDI	GCAATG	2 cut(s)	341, 808
BsrI	ACTGG	3 cut(s)	464, 475, 795
BssECI	CCNNGG	6 cut(s)	128, 226, 259, 354, 403, 695
BssMI	GATC	3 cut(s)	333, 416, 713
BssT1I	CCWWGG	2 cut(s)	259, 354
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	308
BstAFI	CTTAAG	1 cut(s)	376
BstC8I	GCNNGC	4 cut(s)	220, 293, 297, 799
BstDEI	CTNAG	1 cut(s)	831
BstDSI	CCRYGG	2 cut(s)	259, 403
BstENI	CCTNNNNNAGG	1 cut(s)	585
BstF5I	GGATG	3 cut(s)	371, 395, 841
BstKTI	GATC	3 cut(s)	336, 419, 716
BstMBI	GATC	3 cut(s)	333, 416, 713
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 228, 620
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	736
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	2 cut(s)	191, 209
BstX2I	RGATCY	2 cut(s)	333, 713
BstYI	RGATCY	2 cut(s)	333, 713
Bsu36I	CCTNAGG	1 cut(s)	831
BsuRI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BtgI	CCRYGG	2 cut(s)	259, 403
BtsCI	GGATG	3 cut(s)	371, 395, 841
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	4 cut(s)	220, 293, 297, 799
CaiI	CAGNNNCTG	1 cut(s)	470
CciI	TCATGA	1 cut(s)	430
CviAII	CATG	7 cut(s)	260, 431, 446, 620, 733, 753, 822
DdeI	CTNAG	1 cut(s)	831
DpnI	GATC	3 cut(s)	335, 418, 715
DpnII	GATC	3 cut(s)	333, 416, 713
DraI	TTTAAA	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Eco130I	CCWWGG	2 cut(s)	259, 354
Eco81I	CCTNAGG	1 cut(s)	831
Eco88I	CYCGRG	1 cut(s)	696
EcoNI	CCTNNNNNAGG	1 cut(s)	585
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	259, 354
EcoT22I	ATGCAT	1 cut(s)	787
ErhI	CCWWGG	2 cut(s)	259, 354
FaeI	CATG	7 cut(s)	263, 434, 449, 623, 736, 756, 825
FaqI	GGGAC	2 cut(s)	463, 741
FatI	CATG	7 cut(s)	259, 430, 445, 619, 732, 752, 821
FauI	CCCGC	1 cut(s)	700
FauNDI	CATATG	1 cut(s)	781
Fnu4HI	GCNGC	3 cut(s)	60, 205, 223
FokI	GGATG	2 cut(s)	358, 382
Fsp4HI	GCNGC	3 cut(s)	60, 205, 223
FspBI	CTAG	3 cut(s)	53, 717, 744
GluI	GCNGC	3 cut(s)	60, 205, 223
GsuI	CTGGAG	2 cut(s)	447, 492
HaeIII	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	7 cut(s)	263, 434, 449, 623, 736, 756, 825
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	188, 252, 389
Hpy188I	TCNGA	2 cut(s)	75, 609
Hpy188III	TCNNGA	3 cut(s)	431, 538, 698
Hpy8I	GTNNAC	3 cut(s)	188, 252, 389
HpyAV	CCTTC	2 cut(s)	117, 570
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	525
HpyCH4V	TGCA	6 cut(s)	38, 44, 306, 623, 642, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 228, 620
HpyF3I	CTNAG	1 cut(s)	831
HpySE526I	ACGT	1 cut(s)	525
Hsp92II	CATG	7 cut(s)	263, 434, 449, 623, 736, 756, 825
Kzo9I	GATC	3 cut(s)	333, 416, 713
LmnI	GCTCC	2 cut(s)	461, 466
Lsp1109I	GCAGC	2 cut(s)	191, 209
LweI	GCATC	1 cut(s)	794
MaeI	CTAG	3 cut(s)	53, 717, 744
MaeII	ACGT	1 cut(s)	525
MaeIII	GTNAC	3 cut(s)	466, 526, 728
MalI	GATC	3 cut(s)	335, 418, 715
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	3 cut(s)	333, 416, 713
MboII	GAAGA	1 cut(s)	325
MflI	RGATCY	2 cut(s)	333, 713
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	6 cut(s)	89, 96, 108, 235, 484, 760
MluNI	TGGCCA	1 cut(s)	370
Mox20I	TGGCCA	1 cut(s)	370
Mph1103I	ATGCAT	1 cut(s)	787
MroXI	GAANNNNTTC	1 cut(s)	614
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	3 cut(s)	153, 377, 516
Msp20I	TGGCCA	1 cut(s)	370
MspCI	CTTAAG	1 cut(s)	376
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	23, 228, 620
NcoI	CCATGG	1 cut(s)	259
NdeI	CATATG	1 cut(s)	781
NdeII	GATC	3 cut(s)	333, 416, 713
NlaIII	CATG	7 cut(s)	263, 434, 449, 623, 736, 756, 825
NlaIV	GGNNCC	2 cut(s)	178, 828
NmeAIII	GCCGAG	2 cut(s)	153, 251
NmuCI	GTSAC	1 cut(s)	728
NsiI	ATGCAT	1 cut(s)	787
NspI	RCATGY	1 cut(s)	736
PagI	TCATGA	1 cut(s)	430
PciI	ACATGT	1 cut(s)	732
PdmI	GAANNNNTTC	1 cut(s)	614
PflMI	CCANNNNNTGG	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	61, 206, 224
PscI	ACATGT	1 cut(s)	732
Psp1406I	AACGTT	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	178, 828
PstNI	CAGNNNCTG	1 cut(s)	470
PsuI	RGATCY	2 cut(s)	333, 713
SaqAI	TTAA	3 cut(s)	153, 377, 516
SatI	GCNGC	3 cut(s)	60, 205, 223
Sau3AI	GATC	3 cut(s)	333, 416, 713
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	7 cut(s)	182, 293, 528, 592, 752, 773, 819
SfaNI	GCATC	1 cut(s)	794
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
SpeI	ACTAGT	1 cut(s)	52
Sse9I	AATT	6 cut(s)	89, 96, 108, 235, 484, 760
SsiI	CCGC	3 cut(s)	59, 459, 707
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	3 cut(s)	53, 717, 744
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	259, 354
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	528
TasI	AATT	6 cut(s)	89, 96, 108, 235, 484, 760
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	153, 377, 516
Tru9I	TTAA	3 cut(s)	153, 377, 516
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	1 cut(s)	728
TseI	GCWGC	2 cut(s)	204, 222
Tsp45I	GTSAC	1 cut(s)	728
TspDTI	ATGAA	5 cut(s)	339, 492, 558, 656, 810
TspRI	CASTG	1 cut(s)	795
Van91I	CCANNNNNTGG	1 cut(s)	470
Vha464I	CTTAAG	1 cut(s)	376
XagI	CCTNNNNNAGG	1 cut(s)	585
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	736
XmnI	GAANNNNTTC	1 cut(s)	614
XspI	CTAG	3 cut(s)	53, 717, 744
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.