Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Reverse (-)

18308798 .. 18312269

Gene Structure 3472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G184700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCCTCTGAAATTGAACAAGTTCCTCATATCTTTGAAAATGGCTATATTCTCTGCCCAATTTGCTTCTGCAGTAGCATTGATAGTAGTAGCTTCGTTGTGTCTGATTGAAGCCAATCAAACTGGAATCGGAATTGAAATTGGAAGCAGAAAGCAGAGAGAGTTCGATTACTTCAACTTGGCCTTGCAATGGCCTGGCACTTTCTGTCAACATACCCGCCATTGTTGTTCATCCAATGCTTGCTGCCGAGGCGCAAATTCTCCAACCGTGTTTACAATCCATGGATTGTGGCCTGACTACAATGATGGAACCTGGCCTGCCTGTTGCACACAGAAAAGCTTTGATGAAAAAGAGATCTCAACATTGCATGATGCATTAGAGAAATATTGGCCGTCTTTAAGTTGTGGTAGACCATCATCCTGCCATGGTGGAAAAGGATCATTTTGGGGTCATGAGTGGGAGAAGCATGGGACTTGCTCCTCTCCAGTAGCTCGAGATGAATACAGCTACTTTTTGACAACCCTCAATGTCTATTTTAAGTACAATGTCACTAAAGTCCTGAATGAAGCAGGATATGTACCTTCAAATACTGAAAAATATCCTCTTGGAGGCATTGTTTCTGCTATTCAGAATGCTTTCCGGACAACCCCAAAGTTGCTTTGCAAAAAAGGTGCTCTGGAGGAACTTCATCTATGCTTCTACAAGGATTTCAAGCCTCGGGATTGTGCGATTGGATCTACCAGTCCAAATGGCAGGCTATATTCAAGTAGTTCATGTCCTGATTACGTCAGCATACCAGCATATGCATCAATGGGGCTTGGCAGTGGTGAAACGGAAATTTCAAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

284

Amino Acids

31.19

Weight (kDa)

7.86

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	409
AccIII	TCCGGA	1 cut(s)	639
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	445, 742
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	256, 837
AfaI	GTAC	2 cut(s)	542, 579
AfiI	CCNNNNNNNGG	2 cut(s)	189, 608
AgsI	TTSAA	9 cut(s)	16, 37, 110, 137, 175, 585, 712, 765, 843
AjnI	CCWGG	2 cut(s)	193, 311
AluBI	AGCT	4 cut(s)	92, 339, 491, 507
AluI	AGCT	4 cut(s)	92, 339, 491, 507
Alw21I	GWGCWC	1 cut(s)	676
AlwI	GGATC	2 cut(s)	445, 742
Ama87I	CYCGRG	2 cut(s)	492, 717
Aor13HI	TCCGGA	1 cut(s)	639
AoxI	GGCC	5 cut(s)	180, 191, 290, 314, 389
ApeKI	GCWGC	1 cut(s)	243
ApoI	RAATTY	2 cut(s)	256, 837
Asp700I	GAANNNNTTC	2 cut(s)	20, 635
AspLEI	GCGC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	839
AvaI	CYCGRG	2 cut(s)	492, 717
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	2 cut(s)	299, 421
BceAI	ACGGC	1 cut(s)	376
BciT130I	CCWGG	2 cut(s)	195, 313
BfmI	CTRYAG	1 cut(s)	69
BglII	AGATCT	1 cut(s)	354
BisI	GCNGC	1 cut(s)	244
BlsI	GCNGC	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	195, 313
BmeT110I	CYCGRG	2 cut(s)	492, 717
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	2 cut(s)	195, 313
BmsI	GCATC	2 cut(s)	361, 815
BpmI	CTGGAG	2 cut(s)	468, 698
BsaJI	CCNNGG	4 cut(s)	247, 280, 424, 716
BsaWI	WCCGGW	1 cut(s)	639
BsaXI	ACNNNNNCTCC	2 cut(s)	600, 630
Bsc4I	CCNNNNNNNGG	2 cut(s)	189, 608
Bse1I	ACTGG	3 cut(s)	127, 485, 741
Bse3DI	GCAATG	2 cut(s)	194, 362
BseAI	TCCGGA	1 cut(s)	639
BseBI	CCWGG	2 cut(s)	195, 313
BseDI	CCNNGG	4 cut(s)	247, 280, 424, 716
BseGI	GGATG	2 cut(s)	230, 416
BseLI	CCNNNNNNNGG	2 cut(s)	189, 608
BseMI	GCAATG	2 cut(s)	194, 362
BseNI	ACTGG	3 cut(s)	127, 485, 741
BseRI	GAGGAG	1 cut(s)	469
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	5 cut(s)	182, 193, 292, 316, 391
BsiHKAI	GWGCWC	1 cut(s)	676
BsiHKCI	CYCGRG	2 cut(s)	492, 717
BsiSI	CCGG	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	189, 608
BsmFI	GGGAC	1 cut(s)	484
BsmI	GAATGC	1 cut(s)	637
BsnI	GGCC	5 cut(s)	182, 193, 292, 316, 391
BsoBI	CYCGRG	2 cut(s)	492, 717
Bsp1286I	GDGCHC	1 cut(s)	676
Bsp13I	TCCGGA	1 cut(s)	639
Bsp143I	GATC	3 cut(s)	354, 437, 734
Bsp19I	CCATGG	2 cut(s)	280, 424
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	5 cut(s)	182, 193, 292, 316, 391
BspEI	TCCGGA	1 cut(s)	639
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	2 cut(s)	445, 742
BsrDI	GCAATG	2 cut(s)	194, 362
BsrI	ACTGG	3 cut(s)	127, 485, 741
BssECI	CCNNGG	4 cut(s)	247, 280, 424, 716
BssMI	GATC	3 cut(s)	354, 437, 734
BssT1I	CCWWGG	2 cut(s)	280, 424
Bst2UI	CCWGG	2 cut(s)	195, 313
Bst4CI	ACNGT	1 cut(s)	268
BstC8I	GCNNGC	3 cut(s)	241, 318, 755
BstDSI	CCRYGG	2 cut(s)	280, 424
BstENI	CCTNNNNNAGG	1 cut(s)	606
BstF5I	GGATG	2 cut(s)	230, 416
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	3 cut(s)	357, 440, 737
BstMBI	GATC	3 cut(s)	354, 437, 734
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 249
BstNI	CCWGG	2 cut(s)	195, 313
BstSCI	CCNGG	2 cut(s)	193, 311
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	230
BstX2I	RGATCY	2 cut(s)	354, 734
BstYI	RGATCY	2 cut(s)	354, 734
BsuRI	GGCC	5 cut(s)	182, 193, 292, 316, 391
BtgI	CCRYGG	2 cut(s)	280, 424
BtsCI	GGATG	2 cut(s)	230, 416
BtsI	GCAGTG	1 cut(s)	829
BtsIMutI	CAGTG	1 cut(s)	829
Cac8I	GCNNGC	3 cut(s)	241, 318, 755
CciI	TCATGA	1 cut(s)	451
CfoI	GCGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	541, 578
CviAII	CATG	6 cut(s)	281, 368, 425, 452, 467, 774
CviQI	GTAC	2 cut(s)	541, 578
DpnI	GATC	3 cut(s)	356, 439, 736
DpnII	GATC	3 cut(s)	354, 437, 734
EaeI	YGGCCR	1 cut(s)	389
Eco130I	CCWWGG	2 cut(s)	280, 424
Eco88I	CYCGRG	2 cut(s)	492, 717
EcoNI	CCTNNNNNAGG	1 cut(s)	606
EcoRII	CCWGG	2 cut(s)	193, 311
EcoT14I	CCWWGG	2 cut(s)	280, 424
EcoT22I	ATGCAT	2 cut(s)	376, 808
ErhI	CCWWGG	2 cut(s)	280, 424
FaeI	CATG	6 cut(s)	284, 371, 428, 455, 470, 777
FaqI	GGGAC	1 cut(s)	484
FatI	CATG	6 cut(s)	280, 367, 424, 451, 466, 773
FauI	CCCGC	1 cut(s)	224
FauNDI	CATATG	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	409
Fnu4HI	GCNGC	1 cut(s)	244
FokI	GGATG	2 cut(s)	217, 403
Fsp4HI	GCNGC	1 cut(s)	244
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	244
GsuI	CTGGAG	2 cut(s)	468, 698
HaeIII	GGCC	5 cut(s)	182, 193, 292, 316, 391
HapII	CCGG	1 cut(s)	640
HhaI	GCGC	1 cut(s)	254
Hin1II	CATG	6 cut(s)	284, 371, 428, 455, 470, 777
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HindIII	AAGCTT	1 cut(s)	337
HinfI	GANTC	1 cut(s)	126
HpaII	CCGG	1 cut(s)	640
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	3 cut(s)	209, 273, 410
Hpy188I	TCNGA	4 cut(s)	9, 105, 131, 630
Hpy188III	TCNNGA	7 cut(s)	452, 494, 559, 640, 677, 719, 779
Hpy8I	GTNNAC	3 cut(s)	209, 273, 410
HpyAV	CCTTC	1 cut(s)	591
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	1 cut(s)	786
HpyCH4V	TGCA	7 cut(s)	71, 187, 327, 367, 374, 663, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 249
HpySE526I	ACGT	1 cut(s)	786
Hsp92II	CATG	6 cut(s)	284, 371, 428, 455, 470, 777
HspAI	GCGC	1 cut(s)	252
Kpn2I	TCCGGA	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	354, 437, 734
LmnI	GCTCC	1 cut(s)	482
Lsp1109I	GCAGC	1 cut(s)	230
LweI	GCATC	2 cut(s)	361, 815
MaeII	ACGT	1 cut(s)	786
MaeIII	GTNAC	1 cut(s)	547
MalI	GATC	3 cut(s)	356, 439, 736
MboI	GATC	3 cut(s)	354, 437, 734
MflI	RGATCY	2 cut(s)	354, 734
MhlI	GDGCHC	1 cut(s)	676
MluCI	AATT	6 cut(s)	11, 59, 132, 138, 256, 837
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	9 cut(s)	15, 35, 242, 490, 533, 602, 612, 673, 726
Mph1103I	ATGCAT	2 cut(s)	376, 808
MroI	TCCGGA	1 cut(s)	639
MroXI	GAANNNNTTC	2 cut(s)	20, 635
MseI	TTAA	2 cut(s)	398, 537
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	2 cut(s)	195, 313
Mva1269I	GAATGC	1 cut(s)	637
MvaI	CCWGG	2 cut(s)	195, 313
MwoI	GCNNNNNNNGC	2 cut(s)	62, 249
NcoI	CCATGG	2 cut(s)	280, 424
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	3 cut(s)	354, 437, 734
NlaIII	CATG	6 cut(s)	284, 371, 428, 455, 470, 777
NlaIV	GGNNCC	1 cut(s)	310
NmeAIII	GCCGAG	1 cut(s)	272
NmuCI	GTSAC	1 cut(s)	547
NsiI	ATGCAT	2 cut(s)	376, 808
PaeR7I	CTCGAG	1 cut(s)	492
PagI	TCATGA	1 cut(s)	451
PctI	GAATGC	1 cut(s)	637
PdmI	GAANNNNTTC	2 cut(s)	20, 635
PfeI	GAWTC	1 cut(s)	126
PkrI	GCNGC	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	193, 311
PspGI	CCWGG	2 cut(s)	193, 311
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	354, 734
RsaI	GTAC	2 cut(s)	542, 579
RsaNI	GTAC	2 cut(s)	541, 578
SaqAI	TTAA	2 cut(s)	398, 537
SatI	GCNGC	1 cut(s)	244
Sau3AI	GATC	3 cut(s)	354, 437, 734
ScrFI	CCNGG	2 cut(s)	195, 313
SduI	GDGCHC	1 cut(s)	676
SetI	ASST	8 cut(s)	94, 314, 341, 493, 509, 583, 673, 789
SfaNI	GCATC	2 cut(s)	361, 815
SfcI	CTRYAG	1 cut(s)	69
Sfr274I	CTCGAG	1 cut(s)	492
SlaI	CTCGAG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	492
SmoI	CTYRAG	1 cut(s)	492
Sse9I	AATT	6 cut(s)	11, 59, 132, 138, 256, 837
SsiI	CCGC	1 cut(s)	217
SspI	AATATT	1 cut(s)	386
StyD4I	CCNGG	2 cut(s)	193, 311
StyI	CCWWGG	2 cut(s)	280, 424
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	1 cut(s)	789
TaqI	TCGA	2 cut(s)	165, 493
TasI	AATT	6 cut(s)	11, 59, 132, 138, 256, 837
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	398, 537
Tru9I	TTAA	2 cut(s)	398, 537
TscAI	CASTG	1 cut(s)	829
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	1 cut(s)	243
Tsp45I	GTSAC	1 cut(s)	547
TspDTI	ATGAA	6 cut(s)	219, 360, 513, 579, 677, 762
TspGWI	ACGGA	1 cut(s)	848
TspRI	CASTG	1 cut(s)	829
XagI	CCTNNNNNAGG	1 cut(s)	606
XapI	RAATTY	2 cut(s)	256, 837
XhoI	CTCGAG	1 cut(s)	492
XmiI	GTMKAC	1 cut(s)	409
XmnI	GAANNNNTTC	2 cut(s)	20, 635
Zsp2I	ATGCAT	2 cut(s)	376, 808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.