Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012525

Physical Location & Seq

Genomic Coordinates Forward (+)

26097148 .. 26101472

Gene Structure 4325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00186750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTTATTCTCTCTGCCAAACTGGCCTCTTCTGCTGCACTTGCATTGATACTGGTAGCGGCTTCGCTGTGTGAGATTGAAGCCAAACAATTTGGAATTGGAATTGAAATTGGAAGCAGAGGAAGGCCGAGGCAGAGAGAGTTTGATTACTTTAACTTGGCCTTACAATGGCCTGGAACTTACTGTCAACGCACCCGTTATTGCTGCCCCAACAACGCCTGCTGCCGAGGCTCAAATTCTCCGGCTGTGTTCACAATCCATGGATTGTGGCCTGACTACAATGATGGAAGCTGGCCTGCCTGTTGCACAAAGAAGAGTTTTGATGAAAAAGAGATCTCAACATTGCTTGACCCCTTGGAGAAATATTGGCCATCATTAAGTTGTGAGAAGCATGGGACTTGCTCCGCTCCAGTAACTGGAGATGAATACAACTACTTTTTGACGACCCTCAATGTGTATTTTAAATACAACGTTACAGTACTAGAACTGTCTGATTGCTTGTCATCCATGCGTGAGATTTGTGAACTTATAATTAAAGTCCTGAATGAAGCAGGATATGTACCTTCTAATACTGAAAAATATCCTCTTGGAGGCATTGTTTCAGCCATTCAGAACGCTTTCCATGCAACCCCAAAGTTGGTTTGCAGAAATGGTGCTGTGGAGGAACTTCATCTTTGCTTCTACAAGGATTTCAAGCCTCGGGATTGTGCGGGTGGATCTAGCAGTTCAAGTGACATGTTATTTTCTAGTAGCTCATGTCCCAATTACATCAGCTTACCAGCATATGCATCACTGGGGGCTGGCAATGTGGGAAGTGAGGTTTCATGGGTGCCTGAGGATGTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005783 GO:0006139 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009894 GO:0009895 GO:0009987 GO:0010168 GO:0010506 GO:0010507 GO:0012505 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046700 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0065007 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonuclease_T2

Protein Analysis

282

Amino Acids

30.95

Weight (kDa)

5.32

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonuclease_T2	PF00445	48 - 236	3.5e-34	Ribonuclease T2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012525)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39780 AT2G39780
fragaria_vesca	FvH4_2g17310 FvH4_2g17310
malus_domestica	MD05G1152000.v1.1 MD10G1146300.v1.1
prunus_persica	Prupe.8G184700_v2.0.a1
pyrus_communis	pycom05g14660 pycom10g12620
rosa_chinensis	RchiOBHm_Chr6g0281821
rosa_laevigata	RLG00000012926
rosa_multiflora	Rmu_sc0001992.1_g000009 Rmu_ssc0000126.1_g000039
rosa_roxburghii	Rroxscaffold_7G00186750
rosa_rugosa	Rorug06G0143700 Rorug06G0143800
rosa_samantha	Rh6BG260100 Rh6DG251100
rosa_wichuraiana	Rw6G022260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	530
AccB1I	GGYRCC	1 cut(s)	829
AccB7I	CCANNNNNTGG	1 cut(s)	416
AccBSI	CCGCTC	1 cut(s)	407
AciI	CCGC	3 cut(s)	59, 405, 710
AclI	AACGTT	1 cut(s)	471
AclWI	GGATC	1 cut(s)	724
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	1 cut(s)	235
AfaI	GTAC	2 cut(s)	480, 561
AfiI	CCNNNNNNNGG	4 cut(s)	168, 416, 590, 637
AflIII	ACRYGT	1 cut(s)	735
AgsI	TTSAA	4 cut(s)	80, 107, 694, 729
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	3 cut(s)	291, 753, 774
AluI	AGCT	3 cut(s)	291, 753, 774
AlwI	GGATC	1 cut(s)	724
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	699
AoxI	GGCC	7 cut(s)	24, 125, 159, 170, 269, 293, 368
ApeKI	GCWGC	3 cut(s)	35, 204, 222
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	617
AvaI	CYCGRG	1 cut(s)	699
AxyI	CCTNAGG	1 cut(s)	834
BalI	TGGCCA	1 cut(s)	370
BanI	GGYRCC	1 cut(s)	829
BbvI	GCAGC	3 cut(s)	22, 191, 209
BccI	CCATC	2 cut(s)	278, 379
BciT130I	CCWGG	1 cut(s)	174
BfaI	CTAG	3 cut(s)	482, 720, 747
BglI	GCCNNNNNGGC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	4 cut(s)	36, 60, 205, 223
BlsI	GCNGC	4 cut(s)	37, 61, 206, 224
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	699
BmiI	GGNNCC	1 cut(s)	831
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	803
BmsI	GCATC	1 cut(s)	797
BmuI	ACTGGG	1 cut(s)	803
BpmI	CTGGAG	2 cut(s)	393, 438
BsaJI	CCNNGG	5 cut(s)	128, 226, 259, 354, 698
BsaXI	ACNNNNNCTCC	2 cut(s)	582, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 416, 590, 637
Bse1I	ACTGG	5 cut(s)	27, 57, 410, 421, 798
Bse21I	CCTNAGG	1 cut(s)	834
Bse3DI	GCAATG	2 cut(s)	341, 811
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	5 cut(s)	128, 226, 259, 354, 698
BseGI	GGATG	2 cut(s)	503, 844
BseLI	CCNNNNNNNGG	4 cut(s)	168, 416, 590, 637
BseMI	GCAATG	2 cut(s)	341, 811
BseMII	CTCAG	1 cut(s)	825
BseNI	ACTGG	5 cut(s)	27, 57, 410, 421, 798
BseXI	GCAGC	3 cut(s)	22, 191, 209
BsgI	GTGCAG	1 cut(s)	21
BshFI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BshNI	GGYRCC	1 cut(s)	829
BsiHKCI	CYCGRG	1 cut(s)	699
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	2 cut(s)	409, 744
BslI	CCNNNNNNNGG	4 cut(s)	168, 416, 590, 637
BsmFI	GGGAC	2 cut(s)	409, 744
BsnI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BsoBI	CYCGRG	1 cut(s)	699
Bsp143I	GATC	2 cut(s)	333, 716
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	3 cut(s)	59, 405, 710
BspANI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BspCNI	CTCAG	1 cut(s)	826
BspLI	GGNNCC	1 cut(s)	831
BspPI	GGATC	1 cut(s)	724
BspT107I	GGYRCC	1 cut(s)	829
BsrBI	CCGCTC	1 cut(s)	407
BsrDI	GCAATG	2 cut(s)	341, 811
BsrI	ACTGG	5 cut(s)	27, 57, 410, 421, 798
BssECI	CCNNGG	5 cut(s)	128, 226, 259, 354, 698
BssMI	GATC	2 cut(s)	333, 716
BssT1I	CCWWGG	2 cut(s)	259, 354
Bst2UI	CCWGG	1 cut(s)	174
Bst4CI	ACNGT	3 cut(s)	185, 478, 489
Bst6I	CTCTTC	2 cut(s)	34, 308
BstC8I	GCNNGC	4 cut(s)	220, 293, 297, 802
BstDEI	CTNAG	1 cut(s)	834
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	503, 844
BstKTI	GATC	2 cut(s)	336, 719
BstMBI	GATC	2 cut(s)	333, 716
BstMWI	GCNNNNNNNGC	5 cut(s)	23, 32, 41, 228, 623
BstNI	CCWGG	1 cut(s)	174
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	22, 191, 209
BstX2I	RGATCY	2 cut(s)	333, 716
BstYI	RGATCY	2 cut(s)	333, 716
Bsu36I	CCTNAGG	1 cut(s)	834
BsuRI	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	503, 844
BtsIMutI	CAGTG	1 cut(s)	791
Cac8I	GCNNGC	4 cut(s)	220, 293, 297, 802
CaiI	CAGNNNCTG	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	479, 560
CviAII	CATG	7 cut(s)	260, 392, 508, 623, 736, 756, 825
CviQI	GTAC	2 cut(s)	479, 560
DdeI	CTNAG	1 cut(s)	834
DpnI	GATC	2 cut(s)	335, 718
DpnII	GATC	2 cut(s)	333, 716
DraI	TTTAAA	1 cut(s)	463
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	2 cut(s)	34, 308
EarI	CTCTTC	2 cut(s)	34, 308
Eco130I	CCWWGG	2 cut(s)	259, 354
Eco81I	CCTNAGG	1 cut(s)	834
Eco88I	CYCGRG	1 cut(s)	699
EcoNI	CCTNNNNNAGG	1 cut(s)	588
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	259, 354
EcoT22I	ATGCAT	1 cut(s)	790
ErhI	CCWWGG	2 cut(s)	259, 354
FaeI	CATG	7 cut(s)	263, 395, 511, 626, 739, 759, 828
FaqI	GGGAC	2 cut(s)	409, 744
FatI	CATG	7 cut(s)	259, 391, 507, 622, 735, 755, 824
FauI	CCCGC	1 cut(s)	703
FauNDI	CATATG	1 cut(s)	784
Fnu4HI	GCNGC	4 cut(s)	36, 60, 205, 223
FokI	GGATG	1 cut(s)	490
Fsp4HI	GCNGC	4 cut(s)	36, 60, 205, 223
FspBI	CTAG	3 cut(s)	482, 720, 747
GluI	GCNGC	4 cut(s)	36, 60, 205, 223
GsuI	CTGGAG	2 cut(s)	393, 438
HaeIII	GGCC	7 cut(s)	26, 127, 161, 172, 271, 295, 370
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	7 cut(s)	263, 395, 511, 626, 739, 759, 828
HincII	GTYRAC	1 cut(s)	188
HindII	GTYRAC	1 cut(s)	188
HpaII	CCGG	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	188, 252, 524
Hpy188I	TCNGA	2 cut(s)	493, 612
Hpy188III	TCNNGA	2 cut(s)	541, 701
Hpy8I	GTNNAC	3 cut(s)	188, 252, 524
HpyAV	CCTTC	2 cut(s)	117, 573
HpyCH4III	ACNGT	3 cut(s)	185, 478, 489
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	6 cut(s)	38, 44, 306, 626, 645, 788
HpyF10VI	GCNNNNNNNGC	5 cut(s)	23, 32, 41, 228, 623
HpyF3I	CTNAG	1 cut(s)	834
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	7 cut(s)	263, 395, 511, 626, 739, 759, 828
Kzo9I	GATC	2 cut(s)	333, 716
LmnI	GCTCC	2 cut(s)	407, 412
Lsp1109I	GCAGC	3 cut(s)	22, 191, 209
LweI	GCATC	1 cut(s)	797
MaeI	CTAG	3 cut(s)	482, 720, 747
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	3 cut(s)	412, 472, 731
MalI	GATC	2 cut(s)	335, 718
MbiI	CCGCTC	1 cut(s)	407
MboI	GATC	2 cut(s)	333, 716
MboII	GAAGA	2 cut(s)	21, 325
MflI	RGATCY	2 cut(s)	333, 716
MlsI	TGGCCA	1 cut(s)	370
MluCI	AATT	7 cut(s)	89, 96, 102, 108, 235, 531, 763
MluNI	TGGCCA	1 cut(s)	370
Mox20I	TGGCCA	1 cut(s)	370
Mph1103I	ATGCAT	1 cut(s)	790
MroXI	GAANNNNTTC	1 cut(s)	617
MscI	TGGCCA	1 cut(s)	370
MseI	TTAA	4 cut(s)	153, 377, 462, 534
Msp20I	TGGCCA	1 cut(s)	370
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	1 cut(s)	174
MvaI	CCWGG	1 cut(s)	174
MwoI	GCNNNNNNNGC	5 cut(s)	23, 32, 41, 228, 623
NcoI	CCATGG	1 cut(s)	259
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	2 cut(s)	333, 716
NlaIII	CATG	7 cut(s)	263, 395, 511, 626, 739, 759, 828
NlaIV	GGNNCC	1 cut(s)	831
NmeAIII	GCCGAG	2 cut(s)	153, 251
NmuCI	GTSAC	1 cut(s)	731
NsiI	ATGCAT	1 cut(s)	790
NspI	RCATGY	1 cut(s)	739
PciI	ACATGT	1 cut(s)	735
PdmI	GAANNNNTTC	1 cut(s)	617
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	4 cut(s)	37, 61, 206, 224
PscI	ACATGT	1 cut(s)	735
PsiI	TTATAA	1 cut(s)	530
Psp1406I	AACGTT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	172
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	1 cut(s)	831
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	2 cut(s)	333, 716
RsaI	GTAC	2 cut(s)	480, 561
RsaNI	GTAC	2 cut(s)	479, 560
SaqAI	TTAA	4 cut(s)	153, 377, 462, 534
SatI	GCNGC	4 cut(s)	36, 60, 205, 223
Sau3AI	GATC	2 cut(s)	333, 716
ScaI	AGTACT	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	6 cut(s)	293, 474, 565, 755, 776, 822
SfaNI	GCATC	1 cut(s)	797
Sse9I	AATT	7 cut(s)	89, 96, 102, 108, 235, 531, 763
SsiI	CCGC	3 cut(s)	59, 405, 710
SspI	AATATT	1 cut(s)	365
SspMI	CTAG	3 cut(s)	482, 720, 747
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	259, 354
TaaI	ACNGT	3 cut(s)	185, 478, 489
TaiI	ACGT	1 cut(s)	474
TasI	AATT	7 cut(s)	89, 96, 102, 108, 235, 531, 763
TatI	WGTACW	1 cut(s)	478
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	4 cut(s)	153, 377, 462, 534
Tru9I	TTAA	4 cut(s)	153, 377, 462, 534
TscAI	CASTG	1 cut(s)	798
TseFI	GTSAC	1 cut(s)	731
TseI	GCWGC	3 cut(s)	35, 204, 222
Tsp45I	GTSAC	1 cut(s)	731
TspDTI	ATGAA	5 cut(s)	339, 438, 561, 659, 813
TspRI	CASTG	1 cut(s)	798
Van91I	CCANNNNNTGG	1 cut(s)	416
XagI	CCTNNNNNAGG	1 cut(s)	588
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	739
XmnI	GAANNNNTTC	1 cut(s)	617
XspI	CTAG	3 cut(s)	482, 720, 747
ZrmI	AGTACT	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.