Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Forward (+)

16627216 .. 16629412

Gene Structure 2197 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCGACGACGACGACGACGCAGGGGCAGCAAACGGCGATTGACTCGGCGGTTCTCGATGATATAATCAGGCGACTCACGGAGGTCCGGTTAGCTAGACCAGGAAAGCAAGTCCAGCTCTCTGAAGCTGAGATCAAACAGCTCTGTACTACAGCTAGAGATATTTTCCTTCAGCAACCCAATTTACTTGAGCTTGAGGCTCCCATCAAAATCTGTGGTGACATACATGGGCAATATAGTGATTTGTTGAGGCTATTTGAGTATGGTGGCTTCCCTCCTAGTGCCAATTATCTATTTCTTGGGGACTATGTGGACAGAGGCAAACAGAGTCTTGAAACAATATGTCTCTTACTAGCTTACAAGATCAAATACCCTGGCAACTTTTTTCTACTAAGGGGAAACCACGAATGTGCTTCTATCAATAGGATATATGGATTTTATGATGAGTGTAAAAGGAGGTTCAATGTGAGAGTATGGAAGGTTTTTACTGATTGTTTTAACTGCCTTCCTGTTGCGGCGCTTATAGATGACAAAATATTGTGTATGCACGGTGGACTTTCGCCGGATCTTGACCATTTGGATGAGATTAGAAACTTGCCGAGACCAACTATGATTCCGGATACCGGGCTTCTCTGTGATTTGCTCTGGTCTGATCCTGGGAAAGATGTTAAAGGATGGGGAATGAATGATAGAGGTGTTTCATACACCTTTGGTCCAGATAAAGTTTCCGAGTTTCTTACGAAACATGATTTAGATCTTGTGTGTCGTGCCCATCAGGTCGTGGAGGATGGGTATGAGTTCTTTGCTGATAGACAACTTGTGACGGTGTTTTCAGCTCCTAACTACTGTGGTGAATTTGATAATGCTGGTGCGATGATGAGCGTGGACGAGAACCTTATGTGCTCGTTTCAGATTTTGAAGCCCGCTGAGAAGAAGACCAAGTTCATGATGTCCACAAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

321

Amino Acids

36.37

Weight (kDa)

5.34

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	19 - 66	1.2e-21	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	68 - 261	2.6e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	616
AciI	CCGC	3 cut(s)	50, 515, 924
AclWI	GGATC	2 cut(s)	573, 647
AcsI	RAATTY	1 cut(s)	854
AcuI	CTGAAG	2 cut(s)	144, 155
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	623
AgsI	TTSAA	3 cut(s)	335, 463, 919
AjnI	CCWGG	3 cut(s)	100, 373, 655
AleI	CACNNNNGTG	1 cut(s)	408
AluBI	AGCT	8 cut(s)	95, 118, 128, 142, 155, 193, 356, 836
AluI	AGCT	8 cut(s)	95, 118, 128, 142, 155, 193, 356, 836
Alw21I	GWGCWC	1 cut(s)	905
Alw26I	GTCTC	2 cut(s)	350, 595
AlwI	GGATC	2 cut(s)	573, 647
Aor13HI	TCCGGA	1 cut(s)	616
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	854
AspLEI	GCGC	1 cut(s)	520
AspS9I	GGNCC	2 cut(s)	85, 713
AsuC2I	CCSGG	1 cut(s)	625
AsuHPI	GGTGA	2 cut(s)	230, 863
AvaII	GGWCC	2 cut(s)	85, 713
BaeGI	GKGCMC	1 cut(s)	772
BarI	GAAGNNNNNNTAC	2 cut(s)	254, 286
BbsI	GAAGAC	1 cut(s)	941
Bbv12I	GWGCWC	1 cut(s)	905
BbvI	GCAGC	1 cut(s)	40
BccI	CCATC	4 cut(s)	212, 669, 780, 782
BceAI	ACGGC	1 cut(s)	51
BciT130I	CCWGG	3 cut(s)	102, 375, 657
BciVI	GTATCC	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	625
BcoDI	GTCTC	2 cut(s)	350, 595
BfaI	CTAG	4 cut(s)	96, 156, 279, 353
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	521
BfuI	GTATCC	1 cut(s)	613
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	2 cut(s)	29, 516
BlsI	GCNGC	2 cut(s)	30, 517
Bme1390I	CCNGG	4 cut(s)	102, 375, 625, 657
Bme18I	GGWCC	2 cut(s)	85, 713
BmgT120I	GGNCC	2 cut(s)	85, 713
BmiI	GGNNCC	1 cut(s)	201
BmrFI	CCNGG	4 cut(s)	102, 375, 625, 657
BpiI	GAAGAC	1 cut(s)	941
BpuEI	CTTGAG	2 cut(s)	209, 215
BpuMI	CCSGG	1 cut(s)	625
BsaBI	GATNNNNATC	1 cut(s)	753
BsaI	GGTCTC	1 cut(s)	595
BsaJI	CCNNGG	2 cut(s)	373, 656
BsaWI	WCCGGW	2 cut(s)	87, 616
BsaXI	ACNNNNNCTCC	4 cut(s)	74, 104, 776, 806
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse8I	GATNNNNATC	1 cut(s)	753
BseAI	TCCGGA	1 cut(s)	616
BseBI	CCWGG	3 cut(s)	102, 375, 657
BseDI	CCNNGG	2 cut(s)	373, 656
BseGI	GGATG	3 cut(s)	586, 680, 793
BseJI	GATNNNNATC	1 cut(s)	753
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMII	CTCAG	2 cut(s)	120, 918
BseSI	GKGCMC	1 cut(s)	772
BseXI	GCAGC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	905
BsiSI	CCGG	4 cut(s)	88, 563, 617, 624
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	2 cut(s)	350, 595
BsmFI	GGGAC	1 cut(s)	317
Bso31I	GGTCTC	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	772, 905
Bsp13I	TCCGGA	1 cut(s)	616
Bsp143I	GATC	5 cut(s)	132, 363, 565, 652, 754
BspACI	CCGC	3 cut(s)	50, 515, 924
BspCNI	CTCAG	2 cut(s)	121, 919
BspEI	TCCGGA	1 cut(s)	616
BspHI	TCATGA	1 cut(s)	945
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	573, 647
BspTNI	GGTCTC	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	373, 656
BssMI	GATC	5 cut(s)	132, 363, 565, 652, 754
Bst2UI	CCWGG	3 cut(s)	102, 375, 657
Bst4CI	ACNGT	3 cut(s)	551, 826, 848
BstC8I	GCNNGC	1 cut(s)	924
BstDEI	CTNAG	3 cut(s)	129, 392, 927
BstF5I	GGATG	3 cut(s)	586, 680, 793
BstH2I	RGCGCY	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	520
BstKTI	GATC	5 cut(s)	135, 366, 568, 655, 757
BstMAI	GTCTC	2 cut(s)	350, 595
BstMBI	GATC	5 cut(s)	132, 363, 565, 652, 754
BstMWI	GCNNNNNNNGC	2 cut(s)	28, 115
BstNI	CCWGG	3 cut(s)	102, 375, 657
BstSCI	CCNGG	4 cut(s)	100, 373, 623, 655
BstSFI	CTRYAG	1 cut(s)	150
BstSLI	GKGCMC	1 cut(s)	772
BstV1I	GCAGC	1 cut(s)	40
BstV2I	GAAGAC	1 cut(s)	941
BstX2I	RGATCY	2 cut(s)	565, 754
BstYI	RGATCY	2 cut(s)	565, 754
BsuI	GTATCC	1 cut(s)	613
BtgZI	GCGATG	1 cut(s)	887
BtsCI	GGATG	3 cut(s)	586, 680, 793
Cac8I	GCNNGC	1 cut(s)	924
CciI	TCATGA	1 cut(s)	945
CfoI	GCGC	1 cut(s)	520
Cfr13I	GGNCC	2 cut(s)	85, 713
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	147
CspCI	CAANNNNNGTGG	2 cut(s)	196, 231
CviAII	CATG	3 cut(s)	227, 746, 946
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	3 cut(s)	129, 392, 927
DpnI	GATC	5 cut(s)	134, 365, 567, 654, 756
DpnII	GATC	5 cut(s)	132, 363, 565, 652, 754
Eco31I	GGTCTC	1 cut(s)	595
Eco47I	GGWCC	2 cut(s)	85, 713
Eco57I	CTGAAG	2 cut(s)	144, 155
EcoRII	CCWGG	3 cut(s)	100, 373, 655
FaeI	CATG	3 cut(s)	230, 749, 949
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	226, 745, 945
FauI	CCCGC	1 cut(s)	931
Fnu4HI	GCNGC	2 cut(s)	29, 516
FokI	GGATG	3 cut(s)	593, 687, 800
Fsp4HI	GCNGC	2 cut(s)	29, 516
FspBI	CTAG	4 cut(s)	96, 156, 279, 353
GlaI	GCGC	1 cut(s)	519
GluI	GCNGC	2 cut(s)	29, 516
HaeII	RGCGCY	1 cut(s)	521
HapII	CCGG	4 cut(s)	88, 563, 617, 624
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	1 cut(s)	520
Hin1II	CATG	3 cut(s)	230, 749, 949
Hin6I	GCGC	1 cut(s)	518
HinP1I	GCGC	1 cut(s)	518
HinfI	GANTC	4 cut(s)	44, 75, 328, 613
HpaII	CCGG	4 cut(s)	88, 563, 617, 624
HphI	GGTGA	2 cut(s)	230, 863
Hpy166II	GTNNAC	4 cut(s)	313, 554, 886, 954
Hpy188I	TCNGA	4 cut(s)	124, 652, 730, 912
Hpy188III	TCNNGA	6 cut(s)	56, 332, 569, 617, 716, 946
Hpy8I	GTNNAC	4 cut(s)	313, 554, 886, 954
Hpy99I	CGWCG	5 cut(s)	10, 13, 16, 19, 22
HpyAV	CCTTC	3 cut(s)	179, 472, 515
HpyCH4III	ACNGT	3 cut(s)	551, 826, 848
HpyCH4V	TGCA	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	28, 115
HpyF3I	CTNAG	3 cut(s)	129, 392, 927
Hsp92II	CATG	3 cut(s)	230, 749, 949
HspAI	GCGC	1 cut(s)	518
Kpn2I	TCCGGA	1 cut(s)	616
Kzo9I	GATC	5 cut(s)	132, 363, 565, 652, 754
LmnI	GCTCC	2 cut(s)	205, 841
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	4 cut(s)	96, 156, 279, 353
MaeIII	GTNAC	2 cut(s)	218, 820
MalI	GATC	5 cut(s)	134, 365, 567, 654, 756
MboI	GATC	5 cut(s)	132, 363, 565, 652, 754
MboII	GAAGA	2 cut(s)	943, 946
MflI	RGATCY	2 cut(s)	565, 754
MhlI	GDGCHC	2 cut(s)	772, 905
MluCI	AATT	3 cut(s)	181, 286, 854
MlyI	GAGTC	3 cut(s)	38, 69, 337
MnlI	CCTC	8 cut(s)	76, 190, 243, 285, 311, 450, 686, 778
MroI	TCCGGA	1 cut(s)	616
MseI	TTAA	2 cut(s)	498, 669
MslI	CAYNNNNRTG	2 cut(s)	408, 579
MspA1I	CMGCKG	1 cut(s)	926
MspI	CCGG	4 cut(s)	88, 563, 617, 624
MspR9I	CCNGG	4 cut(s)	102, 375, 625, 657
MvaI	CCWGG	3 cut(s)	102, 375, 657
MwoI	GCNNNNNNNGC	2 cut(s)	28, 115
NciI	CCSGG	1 cut(s)	625
NdeII	GATC	5 cut(s)	132, 363, 565, 652, 754
NlaIII	CATG	3 cut(s)	230, 749, 949
NlaIV	GGNNCC	1 cut(s)	201
NmeAIII	GCCGAG	2 cut(s)	26, 624
NmuCI	GTSAC	2 cut(s)	218, 820
OliI	CACNNNNGTG	1 cut(s)	408
PagI	TCATGA	1 cut(s)	945
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	613
PkrI	GCNGC	2 cut(s)	30, 517
PleI	GAGTC	3 cut(s)	38, 69, 336
PpsI	GAGTC	3 cut(s)	38, 69, 336
Psp6I	CCWGG	3 cut(s)	100, 373, 655
PspGI	CCWGG	3 cut(s)	100, 373, 655
PspN4I	GGNNCC	1 cut(s)	201
PspPI	GGNCC	2 cut(s)	85, 713
PsuI	RGATCY	2 cut(s)	565, 754
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	408, 579
SaqAI	TTAA	2 cut(s)	498, 669
SatI	GCNGC	2 cut(s)	29, 516
Sau3AI	GATC	5 cut(s)	132, 363, 565, 652, 754
Sau96I	GGNCC	2 cut(s)	85, 713
SchI	GAGTC	3 cut(s)	38, 69, 337
ScrFI	CCNGG	4 cut(s)	102, 375, 625, 657
SduI	GDGCHC	2 cut(s)	772, 905
SfcI	CTRYAG	1 cut(s)	150
SinI	GGWCC	2 cut(s)	85, 713
SmiMI	CAYNNNNRTG	2 cut(s)	408, 579
SmlI	CTYRAG	2 cut(s)	188, 194
SmoI	CTYRAG	2 cut(s)	188, 194
Sse9I	AATT	3 cut(s)	181, 286, 854
SsiI	CCGC	3 cut(s)	50, 515, 924
SspI	AATATT	1 cut(s)	537
SspMI	CTAG	4 cut(s)	96, 156, 279, 353
StyD4I	CCNGG	4 cut(s)	100, 373, 623, 655
TaaI	ACNGT	3 cut(s)	551, 826, 848
TaqI	TCGA	1 cut(s)	57
TasI	AATT	3 cut(s)	181, 286, 854
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	2 cut(s)	498, 669
Tru9I	TTAA	2 cut(s)	498, 669
TseFI	GTSAC	2 cut(s)	218, 820
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	2 cut(s)	218, 820
TspDTI	ATGAA	3 cut(s)	690, 698, 934
TspGWI	ACGGA	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	85, 713
XapI	RAATTY	1 cut(s)	854
XspI	CTAG	4 cut(s)	96, 156, 279, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.