Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Reverse (-)

28233219 .. 28237816

Gene Structure 4598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1205100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCATCGCAGGGGCAGGGAGCGATGGACCCTGCCGTGCTCGACGACATAATCAGGCGGCTCACCGAGGTCCGACTGGCCAGGCCGGGGAAGCAGGTTCAGCTCTCGGAGTCGGAGATCAAACAGCTCTGTGTCGCTTCCAGGGAAATCTTTCTTCAGCAGCCCAATTTGCTCGAGCTTGAGGCCCCAATCAAAATTTGCGGTGACATTCATGGGCAATACAGTGACCTTTTAAGGCTCTTTGAATATGGTGGTTTTCCCCCTAGTGCAAATTATCTGTTCCTAGGTGACTATGTGGATCGTGGCAAGCAGAGTTTAGAAACAATATGCCTCCTGCTCGCCTATAAAATTAAGTATCCAGAGAACTTCTTTCTGCTGAGAGGAAATCATGAATGTGCTTCTATTAATCGTATATATGGATTCTATGATGAGTGCAAGAGGCGATTTAACGTGAGACTTTGGAAATCCTTCACGGACAGCTTTAACTGTCTTCCTGTGGCAGCTCTTATAGATGACAAAATTTTATGCATGCATGGTGGTCTTTCCCCTGATTTGACAAACTTGGATCAGATCAGAAACTTATCTCGTCCAACTGCTGTTCCTGATACTGGATTGCTTTGCGATTTGCTCTGGTCAGATCCTGGTAGAGATGTTAAGGGATGGGGAATGAATGACAGAGGAGTCTCATATACATTCGGCCCTGATAAGGTGGCAGAATTTTTAACGAATCATGATTTGGACCTTGTTTGTCGTGCCCATCAGGTTGTGGAAGATGGTTATGAATTCTTTGCGGACAGGCAACTTGTTACAATTTTTTCAGCTCCCAACTACTGTGGTGAGTTTGACAATGCTGGTGCGATGATGAGTGTAGATGAAAACTTAATGTGCTCTTTCCAGATTCTTAAGCCAGCTGAGAAAAAAGCCAAGTTCATGATGTCAACAAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

317

Amino Acids

35.76

Weight (kDa)

5.25

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	14 - 61	2.4e-21	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	63 - 256	1.7e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	680
Acc36I	ACCTGC	1 cut(s)	85
AciI	CCGC	3 cut(s)	58, 201, 791
AclWI	GGATC	3 cut(s)	306, 573, 632
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	4 cut(s)	195, 519, 716, 782
AcuI	CTGAAG	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	87, 608, 706
AflII	CTTAAG	1 cut(s)	902
AgsI	TTSAA	1 cut(s)	245
AjnI	CCWGG	3 cut(s)	80, 140, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	7 cut(s)	103, 127, 178, 480, 503, 821, 911
AluI	AGCT	7 cut(s)	103, 127, 178, 480, 503, 821, 911
Alw21I	GWGCWC	2 cut(s)	42, 890
Alw26I	GTCTC	2 cut(s)	448, 688
AlwI	GGATC	3 cut(s)	306, 573, 632
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	4 cut(s)	78, 83, 183, 697
ApeKI	GCWGC	2 cut(s)	160, 500
ApoI	RAATTY	4 cut(s)	195, 519, 716, 782
AseI	ATTAAT	1 cut(s)	405
Asp700I	GAANNNNTTC	2 cut(s)	150, 467
AspA2I	CCTAGG	1 cut(s)	283
AspS9I	GGNCC	5 cut(s)	28, 70, 184, 698, 739
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	4 cut(s)	55, 215, 299, 848
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	3 cut(s)	28, 70, 739
AvrII	CCTAGG	1 cut(s)	283
BaeGI	GKGCMC	1 cut(s)	757
BalI	TGGCCA	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	2 cut(s)	42, 890
BbvI	GCAGC	2 cut(s)	172, 512
BccI	CCATC	4 cut(s)	19, 654, 765, 767
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	3 cut(s)	82, 142, 642
BciVI	GTATCC	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	448, 688
BfaI	CTAG	2 cut(s)	264, 284
BfrI	CTTAAG	1 cut(s)	902
BfuAI	ACCTGC	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	3 cut(s)	59, 161, 501
BlnI	CCTAGG	1 cut(s)	283
BlsI	GCNGC	3 cut(s)	60, 162, 502
Bme1390I	CCNGG	4 cut(s)	82, 87, 142, 642
Bme18I	GGWCC	3 cut(s)	28, 70, 739
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	5 cut(s)	28, 70, 184, 698, 739
BmiI	GGNNCC	2 cut(s)	30, 186
BmrFI	CCNGG	4 cut(s)	82, 87, 142, 642
BmsI	GCATC	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	200
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	4 cut(s)	66, 86, 141, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 608, 706
Bse1I	ACTGG	2 cut(s)	81, 613
BseBI	CCWGG	3 cut(s)	82, 142, 642
BseDI	CCNNGG	4 cut(s)	66, 86, 141, 283
BseGI	GGATG	1 cut(s)	665
BseLI	CCNNNNNNNGG	3 cut(s)	87, 608, 706
BseMII	CTCAG	2 cut(s)	368, 903
BseNI	ACTGG	2 cut(s)	81, 613
BseRI	GAGGAG	1 cut(s)	693
BseSI	GKGCMC	1 cut(s)	757
BseXI	GCAGC	2 cut(s)	172, 512
BshFI	GGCC	4 cut(s)	80, 85, 185, 699
BsiHKAI	GWGCWC	2 cut(s)	42, 890
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	1 cut(s)	86
BslI	CCNNNNNNNGG	3 cut(s)	87, 608, 706
BsmAI	GTCTC	2 cut(s)	448, 688
BsnI	GGCC	4 cut(s)	80, 85, 185, 699
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	42, 757, 890
Bsp143I	GATC	5 cut(s)	117, 298, 565, 570, 637
BspACI	CCGC	3 cut(s)	58, 201, 791
BspANI	GGCC	4 cut(s)	80, 85, 185, 699
BspCNI	CTCAG	2 cut(s)	369, 904
BspHI	TCATGA	3 cut(s)	388, 730, 930
BspLI	GGNNCC	2 cut(s)	30, 186
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	3 cut(s)	306, 573, 632
BspTI	CTTAAG	1 cut(s)	902
BsrI	ACTGG	2 cut(s)	81, 613
BssECI	CCNNGG	4 cut(s)	66, 86, 141, 283
BssMI	GATC	5 cut(s)	117, 298, 565, 570, 637
BssT1I	CCWWGG	1 cut(s)	283
Bst2UI	CCWGG	3 cut(s)	82, 142, 642
Bst4CI	ACNGT	3 cut(s)	224, 488, 833
BstAFI	CTTAAG	1 cut(s)	902
BstC8I	GCNNGC	4 cut(s)	308, 339, 530, 909
BstDEI	CTNAG	2 cut(s)	377, 912
BstF5I	GGATG	1 cut(s)	665
BstKTI	GATC	5 cut(s)	120, 301, 568, 573, 640
BstMAI	GTCTC	2 cut(s)	448, 688
BstMBI	GATC	5 cut(s)	117, 298, 565, 570, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 100, 169
BstNI	CCWGG	3 cut(s)	82, 142, 642
BstNSI	RCATGY	1 cut(s)	532
BstSCI	CCNGG	4 cut(s)	80, 85, 140, 640
BstSLI	GKGCMC	1 cut(s)	757
BstV1I	GCAGC	2 cut(s)	172, 512
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	4 cut(s)	80, 85, 185, 699
BtgZI	GCGATG	2 cut(s)	38, 872
BtsCI	GGATG	1 cut(s)	665
BtsIMutI	CAGTG	1 cut(s)	229
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	4 cut(s)	308, 339, 530, 909
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	3 cut(s)	388, 730, 930
Cfr13I	GGNCC	5 cut(s)	28, 70, 184, 698, 739
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviAII	CATG	6 cut(s)	212, 389, 529, 533, 731, 931
DdeI	CTNAG	2 cut(s)	377, 912
DpnI	GATC	5 cut(s)	119, 300, 567, 572, 639
DpnII	GATC	5 cut(s)	117, 298, 565, 570, 637
DrdI	GACNNNNNNGTC	1 cut(s)	680
DseDI	GACNNNNNNGTC	1 cut(s)	680
EaeI	YGGCCR	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	283
Eco47I	GGWCC	3 cut(s)	28, 70, 739
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	3 cut(s)	80, 140, 640
EcoT14I	CCWWGG	1 cut(s)	283
EcoT22I	ATGCAT	2 cut(s)	530, 534
ErhI	CCWWGG	1 cut(s)	283
FaeI	CATG	6 cut(s)	215, 392, 532, 536, 734, 934
FatI	CATG	6 cut(s)	211, 388, 528, 532, 730, 930
Fnu4HI	GCNGC	3 cut(s)	59, 161, 501
FokI	GGATG	1 cut(s)	672
Fsp4HI	GCNGC	3 cut(s)	59, 161, 501
FspBI	CTAG	2 cut(s)	264, 284
GluI	GCNGC	3 cut(s)	59, 161, 501
HaeIII	GGCC	4 cut(s)	80, 85, 185, 699
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	6 cut(s)	215, 392, 532, 536, 734, 934
HincII	GTYRAC	1 cut(s)	939
HindII	GTYRAC	1 cut(s)	939
HinfI	GANTC	5 cut(s)	110, 420, 681, 727, 898
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	4 cut(s)	55, 215, 299, 848
Hpy166II	GTNNAC	1 cut(s)	939
Hpy188I	TCNGA	6 cut(s)	74, 109, 115, 570, 575, 637
Hpy188III	TCNNGA	6 cut(s)	359, 389, 602, 731, 895, 931
Hpy8I	GTNNAC	1 cut(s)	939
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	3 cut(s)	224, 488, 833
HpyCH4IV	ACGT	1 cut(s)	450
HpyCH4V	TGCA	4 cut(s)	269, 435, 528, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 100, 169
HpyF3I	CTNAG	2 cut(s)	377, 912
HpySE526I	ACGT	1 cut(s)	450
Hsp92II	CATG	6 cut(s)	215, 392, 532, 536, 734, 934
Kzo9I	GATC	5 cut(s)	117, 298, 565, 570, 637
LmnI	GCTCC	2 cut(s)	20, 826
Lsp1109I	GCAGC	2 cut(s)	172, 512
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	2 cut(s)	264, 284
MaeII	ACGT	1 cut(s)	450
MaeIII	GTNAC	4 cut(s)	203, 224, 287, 805
MalI	GATC	5 cut(s)	119, 300, 567, 572, 639
MboI	GATC	5 cut(s)	117, 298, 565, 570, 637
MboII	GAAGA	3 cut(s)	146, 482, 782
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	3 cut(s)	42, 757, 890
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	8 cut(s)	166, 195, 271, 348, 519, 716, 782, 810
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	119, 690
MmeI	TCCRAC	3 cut(s)	93, 97, 614
MnlI	CCTC	6 cut(s)	61, 175, 341, 374, 432, 671
Mox20I	TGGCCA	1 cut(s)	80
Mph1103I	ATGCAT	2 cut(s)	530, 534
MroXI	GAANNNNTTC	2 cut(s)	150, 467
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	9 cut(s)	233, 351, 405, 447, 483, 654, 722, 881, 903
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	80
MspA1I	CMGCKG	1 cut(s)	911
MspCI	CTTAAG	1 cut(s)	902
MspI	CCGG	1 cut(s)	86
MspR9I	CCNGG	4 cut(s)	82, 87, 142, 642
MvaI	CCWGG	3 cut(s)	82, 142, 642
MwoI	GCNNNNNNNGC	3 cut(s)	91, 100, 169
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	5 cut(s)	117, 298, 565, 570, 637
NlaIII	CATG	6 cut(s)	215, 392, 532, 536, 734, 934
NlaIV	GGNNCC	2 cut(s)	30, 186
NmuCI	GTSAC	3 cut(s)	203, 224, 287
NsiI	ATGCAT	2 cut(s)	530, 534
NspI	RCATGY	1 cut(s)	532
PaeI	GCATGC	1 cut(s)	532
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	3 cut(s)	388, 730, 930
PdmI	GAANNNNTTC	2 cut(s)	150, 467
PfeI	GAWTC	3 cut(s)	420, 727, 898
PkrI	GCNGC	3 cut(s)	60, 162, 502
PleI	GAGTC	2 cut(s)	118, 689
PpsI	GAGTC	2 cut(s)	118, 689
PshBI	ATTAAT	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	80, 140, 640
PspGI	CCWGG	3 cut(s)	80, 140, 640
PspN4I	GGNNCC	2 cut(s)	30, 186
PspPI	GGNCC	5 cut(s)	28, 70, 184, 698, 739
PspXI	VCTCGAGB	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	637
PvuII	CAGCTG	1 cut(s)	911
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	9 cut(s)	233, 351, 405, 447, 483, 654, 722, 881, 903
SatI	GCNGC	3 cut(s)	59, 161, 501
Sau3AI	GATC	5 cut(s)	117, 298, 565, 570, 637
Sau96I	GGNCC	5 cut(s)	28, 70, 184, 698, 739
SchI	GAGTC	2 cut(s)	119, 690
ScrFI	CCNGG	4 cut(s)	82, 87, 142, 642
SduI	GDGCHC	3 cut(s)	42, 757, 890
SfaNI	GCATC	1 cut(s)	14
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	3 cut(s)	28, 70, 739
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	3 cut(s)	173, 179, 902
SmoI	CTYRAG	3 cut(s)	173, 179, 902
SphI	GCATGC	1 cut(s)	532
Sse9I	AATT	8 cut(s)	166, 195, 271, 348, 519, 716, 782, 810
SsiI	CCGC	3 cut(s)	58, 201, 791
SspMI	CTAG	2 cut(s)	264, 284
StyD4I	CCNGG	4 cut(s)	80, 85, 140, 640
StyI	CCWWGG	1 cut(s)	283
TaaI	ACNGT	3 cut(s)	224, 488, 833
TaiI	ACGT	1 cut(s)	453
TaqI	TCGA	2 cut(s)	42, 174
TasI	AATT	8 cut(s)	166, 195, 271, 348, 519, 716, 782, 810
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	3 cut(s)	420, 727, 898
Tru1I	TTAA	9 cut(s)	233, 351, 405, 447, 483, 654, 722, 881, 903
Tru9I	TTAA	9 cut(s)	233, 351, 405, 447, 483, 654, 722, 881, 903
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	3 cut(s)	203, 224, 287
TseI	GCWGC	2 cut(s)	160, 500
Tsp45I	GTSAC	3 cut(s)	203, 224, 287
TspDTI	ATGAA	6 cut(s)	200, 405, 683, 795, 888, 919
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	902
VpaK11BI	GGWCC	3 cut(s)	28, 70, 739
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	4 cut(s)	195, 519, 716, 782
XceI	RCATGY	1 cut(s)	532
XhoI	CTCGAG	1 cut(s)	173
XmaJI	CCTAGG	1 cut(s)	283
XmnI	GAANNNNTTC	2 cut(s)	150, 467
XspI	CTAG	2 cut(s)	264, 284
Zsp2I	ATGCAT	2 cut(s)	530, 534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.