Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001791.1

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Reverse (-)

63630 .. 65769

Gene Structure 2140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001791.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

atggaccctgccgtgcttgatgacataatccgacggctcacggaggtccgattggccaggccggggaagcaggtccagctctccgagtccgagatcaaacagctctgtgttgcttccagggaaatctttctccagcagcccaatttgcttgagcttgaagccccaatcaaaatttgcggtgacattcatgggcaatatagcgacctattaaggctctttgaatatgggggctttcctccgagtgcaaattatctgtttttaggtgactatgtggatcgtggcaagcagagtttagaaacaatatgcctcttgctcgcgtataaaatcaaatttccagagaacttttttcttcttagagggaatcacgaatgtgcttctattaatcgtatatatggtttttatgatgagtgcaagcgccggtttaatgtcagactttggaaatcctttaccgacagctttaactgccttcctgtggcagctcttatagatgacaaaatattatgtatgcatggtggtctttcccctgatttgacaaatttggatcagatcaggaatttacctcgtccaactgctattcctgatactggcttgctttgcgatttgctctggtcagatcctggcagagatgttaaaggatggggaatgaatgatagaggagtctcctatacgtttggccctgataaggttgcagaatttctaatgaagcatgatttggaccttgtttgtcgtgctcatcaggttgtggaggatggttatgaattctttgccgacagacaacttgttacaattttttcagcccccaactactgtggtgaatttgacaatgctggtgccatgatgagtgtggatgagaacctaatgtgctctttccagattcttaagccagcagagaaaaaaacaaagttcatggtgtcaacaaaaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

308

Amino Acids

35.08

Weight (kDa)

5.37

Isoelectric Point (pI)

41.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	830
AccII	CGCG	1 cut(s)	317
AciI	CCGC	1 cut(s)	177
AclWI	GGATC	3 cut(s)	282, 549, 608
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	7 cut(s)	171, 329, 535, 553, 692, 758, 815
AfiI	CCNNNNNNNGG	4 cut(s)	63, 472, 584, 682
AflII	CTTAAG	1 cut(s)	878
AgsI	TTSAA	2 cut(s)	158, 221
AjnI	CCWGG	3 cut(s)	56, 116, 616
AjuI	GAANNNNNNNTTGG	2 cut(s)	695, 727
AleI	CACNNNNGTG	1 cut(s)	369
AluBI	AGCT	5 cut(s)	79, 103, 154, 456, 479
AluI	AGCT	5 cut(s)	79, 103, 154, 456, 479
Alw21I	GWGCWC	2 cut(s)	733, 866
Alw26I	GTCTC	1 cut(s)	664
AlwI	GGATC	3 cut(s)	282, 549, 608
AlwNI	CAGNNNCTG	1 cut(s)	617
AoxI	GGCC	3 cut(s)	54, 59, 673
ApeKI	GCWGC	2 cut(s)	136, 476
ApoI	RAATTY	7 cut(s)	171, 329, 535, 553, 692, 758, 815
AseI	ATTAAT	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	417
AspS9I	GGNCC	5 cut(s)	4, 46, 73, 674, 715
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	191, 275, 824
AvaII	GGWCC	4 cut(s)	4, 46, 73, 715
BalI	TGGCCA	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	830
Bbv12I	GWGCWC	2 cut(s)	733, 866
BbvI	GCAGC	2 cut(s)	148, 488
BccI	CCATC	2 cut(s)	630, 743
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	3 cut(s)	58, 118, 618
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	664
BfoI	RGCGCY	1 cut(s)	418
BfrI	CTTAAG	1 cut(s)	878
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	137, 477
BlsI	GCNGC	2 cut(s)	138, 478
Bme1390I	CCNGG	4 cut(s)	58, 63, 118, 618
Bme18I	GGWCC	4 cut(s)	4, 46, 73, 715
BmgT120I	GGNCC	5 cut(s)	4, 46, 73, 674, 715
BmiI	GGNNCC	2 cut(s)	6, 832
BmrFI	CCNGG	4 cut(s)	58, 63, 118, 618
BpmI	CTGGAG	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	62, 117
Bsc4I	CCNNNNNNNGG	4 cut(s)	63, 472, 584, 682
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	1 cut(s)	589
BseBI	CCWGG	3 cut(s)	58, 118, 618
BseDI	CCNNGG	2 cut(s)	62, 117
BseGI	GGATG	3 cut(s)	641, 754, 853
BseLI	CCNNNNNNNGG	4 cut(s)	63, 472, 584, 682
BseNI	ACTGG	1 cut(s)	589
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	148, 488
Bsh1236I	CGCG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	56, 61, 675
BshNI	GGYRCC	1 cut(s)	830
BsiHKAI	GWGCWC	2 cut(s)	733, 866
BsiSI	CCGG	2 cut(s)	62, 418
BslI	CCNNNNNNNGG	4 cut(s)	63, 472, 584, 682
BsmAI	GTCTC	1 cut(s)	664
BsnI	GGCC	3 cut(s)	56, 61, 675
Bsp1286I	GDGCHC	2 cut(s)	733, 866
Bsp143I	GATC	5 cut(s)	93, 274, 541, 546, 613
BspACI	CCGC	1 cut(s)	177
BspANI	GGCC	3 cut(s)	56, 61, 675
BspFNI	CGCG	1 cut(s)	317
BspLI	GGNNCC	2 cut(s)	6, 832
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	3 cut(s)	282, 549, 608
BspT107I	GGYRCC	1 cut(s)	830
BspTI	CTTAAG	1 cut(s)	878
BsrFI	RCCGGY	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	589
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	2 cut(s)	62, 117
BssMI	GATC	5 cut(s)	93, 274, 541, 546, 613
Bst2UI	CCWGG	3 cut(s)	58, 118, 618
Bst4CI	ACNGT	1 cut(s)	809
BstAFI	CTTAAG	1 cut(s)	878
BstC8I	GCNNGC	5 cut(s)	284, 315, 413, 590, 885
BstDEI	CTNAG	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	641, 754, 853
BstFNI	CGCG	1 cut(s)	317
BstH2I	RGCGCY	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	417
BstKTI	GATC	5 cut(s)	96, 277, 544, 549, 616
BstMAI	GTCTC	1 cut(s)	664
BstMBI	GATC	5 cut(s)	93, 274, 541, 546, 613
BstMWI	GCNNNNNNNGC	5 cut(s)	67, 76, 145, 462, 594
BstNI	CCWGG	3 cut(s)	58, 118, 618
BstSCI	CCNGG	4 cut(s)	56, 61, 116, 616
BstUI	CGCG	1 cut(s)	317
BstV1I	GCAGC	2 cut(s)	148, 488
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
BsuRI	GGCC	3 cut(s)	56, 61, 675
BtsCI	GGATG	3 cut(s)	641, 754, 853
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	5 cut(s)	284, 315, 413, 590, 885
CaiI	CAGNNNCTG	1 cut(s)	617
CfoI	GCGC	1 cut(s)	417
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	5 cut(s)	4, 46, 73, 674, 715
CspCI	CAANNNNNGTGG	2 cut(s)	790, 825
CviAII	CATG	5 cut(s)	188, 509, 707, 835, 907
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	5 cut(s)	95, 276, 543, 548, 615
DpnII	GATC	5 cut(s)	93, 274, 541, 546, 613
EaeI	YGGCCR	1 cut(s)	54
Eco47I	GGWCC	4 cut(s)	4, 46, 73, 715
EcoRI	GAATTC	1 cut(s)	758
EcoRII	CCWGG	3 cut(s)	56, 116, 616
EcoT22I	ATGCAT	1 cut(s)	510
FaeI	CATG	5 cut(s)	191, 512, 710, 838, 910
FatI	CATG	5 cut(s)	187, 508, 706, 834, 906
Fnu4HI	GCNGC	2 cut(s)	137, 477
FokI	GGATG	3 cut(s)	648, 761, 860
Fsp4HI	GCNGC	2 cut(s)	137, 477
GlaI	GCGC	1 cut(s)	416
GluI	GCNGC	2 cut(s)	137, 477
GsuI	CTGGAG	1 cut(s)	116
HaeII	RGCGCY	1 cut(s)	418
HaeIII	GGCC	3 cut(s)	56, 61, 675
HapII	CCGG	2 cut(s)	62, 418
HhaI	GCGC	1 cut(s)	417
Hin1II	CATG	5 cut(s)	191, 512, 710, 838, 910
Hin6I	GCGC	1 cut(s)	415
HinP1I	GCGC	1 cut(s)	415
HincII	GTYRAC	1 cut(s)	915
HindII	GTYRAC	1 cut(s)	915
HinfI	GANTC	4 cut(s)	86, 361, 657, 874
HpaII	CCGG	2 cut(s)	62, 418
HphI	GGTGA	3 cut(s)	191, 275, 824
Hpy166II	GTNNAC	1 cut(s)	915
Hpy188I	TCNGA	8 cut(s)	32, 50, 85, 91, 240, 431, 546, 613
Hpy188III	TCNNGA	5 cut(s)	335, 365, 550, 578, 871
Hpy8I	GTNNAC	1 cut(s)	915
Hpy99I	CGWCG	1 cut(s)	36
HpyAV	CCTTC	1 cut(s)	476
HpyCH4III	ACNGT	1 cut(s)	809
HpyCH4IV	ACGT	1 cut(s)	668
HpyCH4V	TGCA	4 cut(s)	245, 411, 508, 689
HpyF10VI	GCNNNNNNNGC	5 cut(s)	67, 76, 145, 462, 594
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	668
Hsp92II	CATG	5 cut(s)	191, 512, 710, 838, 910
HspAI	GCGC	1 cut(s)	415
Kzo9I	GATC	5 cut(s)	93, 274, 541, 546, 613
Lsp1109I	GCAGC	2 cut(s)	148, 488
MaeII	ACGT	1 cut(s)	668
MaeIII	GTNAC	3 cut(s)	179, 263, 781
MalI	GATC	5 cut(s)	95, 276, 543, 548, 615
MboI	GATC	5 cut(s)	93, 274, 541, 546, 613
MboII	GAAGA	1 cut(s)	341
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	2 cut(s)	733, 866
MlsI	TGGCCA	1 cut(s)	56
MluNI	TGGCCA	1 cut(s)	56
MlyI	GAGTC	2 cut(s)	95, 666
MmeI	TCCRAC	2 cut(s)	55, 590
MnlI	CCTC	7 cut(s)	37, 246, 317, 350, 570, 647, 739
Mox20I	TGGCCA	1 cut(s)	56
Mph1103I	ATGCAT	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	126
MscI	TGGCCA	1 cut(s)	56
MseI	TTAA	6 cut(s)	209, 381, 423, 459, 630, 879
MslI	CAYNNNNRTG	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	56
MspCI	CTTAAG	1 cut(s)	878
MspI	CCGG	2 cut(s)	62, 418
MspR9I	CCNGG	4 cut(s)	58, 63, 118, 618
MvaI	CCWGG	3 cut(s)	58, 118, 618
MvnI	CGCG	1 cut(s)	317
MwoI	GCNNNNNNNGC	5 cut(s)	67, 76, 145, 462, 594
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	5 cut(s)	93, 274, 541, 546, 613
NlaIII	CATG	5 cut(s)	191, 512, 710, 838, 910
NlaIV	GGNNCC	2 cut(s)	6, 832
NmuCI	GTSAC	2 cut(s)	179, 263
NsiI	ATGCAT	1 cut(s)	510
OliI	CACNNNNGTG	1 cut(s)	369
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	361, 874
PkrI	GCNGC	2 cut(s)	138, 478
PleI	GAGTC	2 cut(s)	94, 665
PpsI	GAGTC	2 cut(s)	94, 665
PshBI	ATTAAT	1 cut(s)	381
Psp6I	CCWGG	3 cut(s)	56, 116, 616
PspGI	CCWGG	3 cut(s)	56, 116, 616
PspN4I	GGNNCC	2 cut(s)	6, 832
PspPI	GGNCC	5 cut(s)	4, 46, 73, 674, 715
PstNI	CAGNNNCTG	1 cut(s)	617
PsuI	RGATCY	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	6 cut(s)	209, 381, 423, 459, 630, 879
SatI	GCNGC	2 cut(s)	137, 477
Sau3AI	GATC	5 cut(s)	93, 274, 541, 546, 613
Sau96I	GGNCC	5 cut(s)	4, 46, 73, 674, 715
SchI	GAGTC	2 cut(s)	95, 666
ScrFI	CCNGG	4 cut(s)	58, 63, 118, 618
SduI	GDGCHC	2 cut(s)	733, 866
SinI	GGWCC	4 cut(s)	4, 46, 73, 715
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	149, 878
SmoI	CTYRAG	2 cut(s)	149, 878
SsiI	CCGC	1 cut(s)	177
SspI	AATATT	1 cut(s)	498
StyD4I	CCNGG	4 cut(s)	56, 61, 116, 616
TaaI	ACNGT	1 cut(s)	809
TaiI	ACGT	1 cut(s)	671
TfiI	GAWTC	2 cut(s)	361, 874
Tru1I	TTAA	6 cut(s)	209, 381, 423, 459, 630, 879
Tru9I	TTAA	6 cut(s)	209, 381, 423, 459, 630, 879
TseFI	GTSAC	2 cut(s)	179, 263
TseI	GCWGC	2 cut(s)	136, 476
Tsp45I	GTSAC	2 cut(s)	179, 263
TspDTI	ATGAA	5 cut(s)	176, 659, 716, 771, 895
TspGWI	ACGGA	1 cut(s)	56
Vha464I	CTTAAG	1 cut(s)	878
VpaK11BI	GGWCC	4 cut(s)	4, 46, 73, 715
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	7 cut(s)	171, 329, 535, 553, 692, 758, 815
XcmI	CCANNNNNNNNNTGG	1 cut(s)	841
XmnI	GAANNNNTTC	1 cut(s)	126
Zsp2I	ATGCAT	1 cut(s)	510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.