Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig01004

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Reverse (-)

19865 .. 21381

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G021680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGAGTGACGTCTCACAGAGGTCCAATCAGCAAGGCCGGGGAAGCAGGTCCATCTCGCAGTCTGACATCCAGCAGCCTTGTGTAGCTTCCAAAGACATCTTCCTTCAACAGCCCAATTTGCTGGAGCTTAAAGGTCCTGTCAGTATTTGTGGCAACATCAATGGGCAATACTCTGACCTGTTGAGGCTCTTTGAACATGGTGGTTTTCCTCCTAGTGCAAATTATCTATTCCTAGGTGGTTATGTGGATTATGGGAAGCAAAGTATAGAAACAATGTGCCTCTTGCTTGCTTATAAAATCAAACATCCGGAGAACTTCTTTCTCCTTAGAGGGAATCATGAATGCGCTTCTATCAACCTAAAACATGGATTTTATGATGAATGCAAGCGGAGATTCAATGTGAGGATCTGGAAATGCTTCAATGACTCTTTTAACTGTCTTCCTGCGGCAGCTCTTGTAGATGACAGAATATTATGTGTGCATGGTGGTCCTTCGCCCGATTTGGAGAACTTGGATCAGATCAGAAACTTGCCTCGTCCTAGTAATGTCCCTGATACCGGCTTGCTTTGTGATTTGCTCTGGTCAAGTCCTTGTAGTGATGTTAAGGGATGGGGAACGAACAAACACTCAGAACACATTGAACTCCCATTCTCTTACTTAACCTTTGGGTCTGATAAGGTTGTGGAGTGTGATCGCGGCTATGAATTCTTCGCCAACAGCCAACTTGTTACAATTTCATCAGCCCCCAACTTCCGCAGTGAACATAACAATGCTGGAGCTATGATGCATGTAGATGAGACCTTAATGTGCTCCTTCCAGATTCTCAAGGCAAAAGTCAAGAGATCTGTGTTCAATTTTTCACCAGTAACAAGAGCATTTCAGAGAAATCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

297

Amino Acids

33.44

Weight (kDa)

7.08

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	13 - 44	1.2e-07	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	49 - 221	2e-31	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	294
AatII	GACGTC	1 cut(s)	12
Acc36I	ACCTGC	1 cut(s)	36
AccII	CGCG	1 cut(s)	696
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	4 cut(s)	388, 446, 696, 754
AclWI	GGATC	2 cut(s)	413, 522
AcsI	RAATTY	1 cut(s)	704
AcyI	GRCGYC	1 cut(s)	9
AfiI	CCNNNNNNNGG	1 cut(s)	557
AgsI	TTSAA	6 cut(s)	107, 194, 397, 421, 641, 853
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	4 cut(s)	86, 127, 452, 779
AluI	AGCT	4 cut(s)	86, 127, 452, 779
Alw21I	GWGCWC	1 cut(s)	812
Alw26I	GTCTC	2 cut(s)	16, 791
AlwI	GGATC	2 cut(s)	413, 522
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	73, 449
ApoI	RAATTY	1 cut(s)	704
Asp700I	GAANNNNTTC	1 cut(s)	416
AspA2I	CCTAGG	1 cut(s)	232
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	4 cut(s)	21, 48, 134, 488
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	852
AvaII	GGWCC	4 cut(s)	21, 48, 134, 488
AvrII	CCTAGG	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	812
BbvI	GCAGC	2 cut(s)	85, 461
BccI	CCATC	2 cut(s)	59, 603
BcnI	CCSGG	1 cut(s)	38
BcoDI	GTCTC	2 cut(s)	16, 791
BfaI	CTAG	3 cut(s)	213, 233, 540
BfuAI	ACCTGC	1 cut(s)	36
BglII	AGATCT	1 cut(s)	842
BisI	GCNGC	4 cut(s)	74, 447, 450, 697
BlnI	CCTAGG	1 cut(s)	232
BlsI	GCNGC	4 cut(s)	75, 448, 451, 698
Bme1390I	CCNGG	1 cut(s)	38
Bme18I	GGWCC	4 cut(s)	21, 48, 134, 488
BmgT120I	GGNCC	4 cut(s)	21, 48, 134, 488
BmrFI	CCNGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	774
BpiI	GAAGAC	1 cut(s)	431
BpmI	CTGGAG	2 cut(s)	143, 795
BpuEI	CTTGAG	1 cut(s)	809
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	9
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	2 cut(s)	37, 232
BsaWI	WCCGGW	1 cut(s)	307
Bsc4I	CCNNNNNNNGG	1 cut(s)	557
Bse118I	RCCGGY	1 cut(s)	557
Bse1I	ACTGG	1 cut(s)	863
BseAI	TCCGGA	1 cut(s)	307
BseDI	CCNNGG	2 cut(s)	37, 232
BseGI	GGATG	3 cut(s)	66, 304, 614
BseLI	CCNNNNNNNGG	1 cut(s)	557
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	1 cut(s)	863
BseXI	GCAGC	2 cut(s)	85, 461
Bsh1236I	CGCG	1 cut(s)	696
BshFI	GGCC	1 cut(s)	36
BsiHKAI	GWGCWC	1 cut(s)	812
BsiSI	CCGG	3 cut(s)	37, 308, 558
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	557
BsmAI	GTCTC	2 cut(s)	16, 791
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	2 cut(s)	347, 386
BsnI	GGCC	1 cut(s)	36
Bso31I	GGTCTC	1 cut(s)	791
Bsp1286I	GDGCHC	1 cut(s)	812
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	5 cut(s)	405, 514, 519, 691, 842
BspACI	CCGC	4 cut(s)	388, 446, 696, 754
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	1 cut(s)	641
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	696
BspHI	TCATGA	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	36
BspPI	GGATC	2 cut(s)	413, 522
BspTNI	GGTCTC	1 cut(s)	791
BsrFI	RCCGGY	1 cut(s)	557
BsrI	ACTGG	1 cut(s)	863
BssAI	RCCGGY	1 cut(s)	557
BssECI	CCNNGG	2 cut(s)	37, 232
BssMI	GATC	5 cut(s)	405, 514, 519, 691, 842
BssNI	GRCGYC	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	437
BstACI	GRCGYC	1 cut(s)	9
BstC8I	GCNNGC	3 cut(s)	288, 386, 563
BstDEI	CTNAG	2 cut(s)	326, 628
BstF5I	GGATG	3 cut(s)	66, 304, 614
BstFNI	CGCG	1 cut(s)	696
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	5 cut(s)	408, 517, 522, 694, 845
BstMAI	GTCTC	2 cut(s)	16, 791
BstMBI	GATC	5 cut(s)	405, 514, 519, 691, 842
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 118
BstNSI	RCATGY	1 cut(s)	791
BstSCI	CCNGG	1 cut(s)	36
BstUI	CGCG	1 cut(s)	696
BstV1I	GCAGC	2 cut(s)	85, 461
BstV2I	GAAGAC	1 cut(s)	431
BstX2I	RGATCY	2 cut(s)	405, 842
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	2 cut(s)	405, 842
BsuRI	GGCC	1 cut(s)	36
BtsCI	GGATG	3 cut(s)	66, 304, 614
BtsI	GCAGTG	1 cut(s)	763
BtsIMutI	CAGTG	1 cut(s)	763
BveI	ACCTGC	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	288, 386, 563
CciI	TCATGA	1 cut(s)	337
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	557
Cfr13I	GGNCC	4 cut(s)	21, 48, 134, 488
CviAII	CATG	5 cut(s)	197, 338, 365, 482, 788
DdeI	CTNAG	2 cut(s)	326, 628
DpnI	GATC	5 cut(s)	407, 516, 521, 693, 844
DpnII	GATC	5 cut(s)	405, 514, 519, 691, 842
Eco130I	CCWWGG	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	4 cut(s)	21, 48, 134, 488
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	704
EcoT14I	CCWWGG	1 cut(s)	232
EcoT22I	ATGCAT	1 cut(s)	789
ErhI	CCWWGG	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	5 cut(s)	200, 341, 368, 485, 791
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	5 cut(s)	196, 337, 364, 481, 787
Fnu4HI	GCNGC	4 cut(s)	74, 447, 450, 697
FokI	GGATG	3 cut(s)	53, 291, 621
Fsp4HI	GCNGC	4 cut(s)	74, 447, 450, 697
FspBI	CTAG	3 cut(s)	213, 233, 540
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	4 cut(s)	74, 447, 450, 697
GsuI	CTGGAG	2 cut(s)	143, 795
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	3 cut(s)	37, 308, 558
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	200, 341, 368, 485, 791
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HinfI	GANTC	4 cut(s)	334, 393, 425, 820
HpaII	CCGG	3 cut(s)	37, 308, 558
HphI	GGTGA	1 cut(s)	852
Hpy166II	GTNNAC	1 cut(s)	761
Hpy188I	TCNGA	7 cut(s)	64, 175, 519, 524, 631, 673, 882
Hpy188III	TCNNGA	5 cut(s)	308, 338, 409, 817, 838
Hpy8I	GTNNAC	1 cut(s)	761
HpyAV	CCTTC	3 cut(s)	113, 501, 823
HpyCH4III	ACNGT	1 cut(s)	437
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	218, 384, 481, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 118
HpyF3I	CTNAG	2 cut(s)	326, 628
HpySE526I	ACGT	1 cut(s)	9
Hsp92I	GRCGYC	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	200, 341, 368, 485, 791
HspAI	GCGC	1 cut(s)	345
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	5 cut(s)	405, 514, 519, 691, 842
LmnI	GCTCC	3 cut(s)	124, 776, 815
Lsp1109I	GCAGC	2 cut(s)	85, 461
LweI	GCATC	1 cut(s)	774
MaeI	CTAG	3 cut(s)	213, 233, 540
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	3 cut(s)	5, 727, 865
MalI	GATC	5 cut(s)	407, 516, 521, 693, 844
MboI	GATC	5 cut(s)	405, 514, 519, 691, 842
MboII	GAAGA	3 cut(s)	91, 431, 700
MflI	RGATCY	2 cut(s)	405, 842
MhlI	GDGCHC	1 cut(s)	812
MluCI	AATT	5 cut(s)	115, 220, 704, 732, 853
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	7 cut(s)	12, 177, 219, 290, 323, 396, 543
Mph1103I	ATGCAT	1 cut(s)	789
MroI	TCCGGA	1 cut(s)	307
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	6 cut(s)	129, 432, 603, 659, 803, 892
MslI	CAYNNNNRTG	2 cut(s)	768, 792
MspI	CCGG	3 cut(s)	37, 308, 558
MspR9I	CCNGG	1 cut(s)	38
Mva1269I	GAATGC	2 cut(s)	347, 386
MvnI	CGCG	1 cut(s)	696
MwoI	GCNNNNNNNGC	2 cut(s)	42, 118
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	5 cut(s)	405, 514, 519, 691, 842
NlaIII	CATG	5 cut(s)	200, 341, 368, 485, 791
NmuCI	GTSAC	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	789
NspI	RCATGY	1 cut(s)	791
PagI	TCATGA	1 cut(s)	337
PctI	GAATGC	2 cut(s)	347, 386
PdmI	GAANNNNTTC	1 cut(s)	416
PfeI	GAWTC	3 cut(s)	334, 393, 820
PkrI	GCNGC	4 cut(s)	75, 448, 451, 698
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PpuMI	RGGWCCY	1 cut(s)	134
PsiI	TTATAA	1 cut(s)	294
Psp5II	RGGWCCY	1 cut(s)	134
PspPI	GGNCC	4 cut(s)	21, 48, 134, 488
PspPPI	RGGWCCY	1 cut(s)	134
PsuI	RGATCY	2 cut(s)	405, 842
RseI	CAYNNNNRTG	2 cut(s)	768, 792
SaqAI	TTAA	6 cut(s)	129, 432, 603, 659, 803, 892
SatI	GCNGC	4 cut(s)	74, 447, 450, 697
Sau3AI	GATC	5 cut(s)	405, 514, 519, 691, 842
Sau96I	GGNCC	4 cut(s)	21, 48, 134, 488
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	812
SfaNI	GCATC	1 cut(s)	774
SinI	GGWCC	4 cut(s)	21, 48, 134, 488
SmiMI	CAYNNNNRTG	2 cut(s)	768, 792
SmlI	CTYRAG	1 cut(s)	824
SmoI	CTYRAG	1 cut(s)	824
Sse9I	AATT	5 cut(s)	115, 220, 704, 732, 853
SsiI	CCGC	4 cut(s)	388, 446, 696, 754
SspI	AATATT	1 cut(s)	471
SspMI	CTAG	3 cut(s)	213, 233, 540
StyD4I	CCNGG	1 cut(s)	36
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	437
TaiI	ACGT	1 cut(s)	12
TasI	AATT	5 cut(s)	115, 220, 704, 732, 853
TauI	GCSGC	2 cut(s)	449, 699
TfiI	GAWTC	3 cut(s)	334, 393, 820
Tru1I	TTAA	6 cut(s)	129, 432, 603, 659, 803, 892
Tru9I	TTAA	6 cut(s)	129, 432, 603, 659, 803, 892
TscAI	CASTG	1 cut(s)	763
TseFI	GTSAC	1 cut(s)	5
TseI	GCWGC	2 cut(s)	73, 449
Tsp45I	GTSAC	1 cut(s)	5
TspDTI	ATGAA	4 cut(s)	354, 393, 717, 726
TspRI	CASTG	1 cut(s)	763
VpaK11BI	GGWCC	4 cut(s)	21, 48, 134, 488
XapI	RAATTY	1 cut(s)	704
XceI	RCATGY	1 cut(s)	791
XmaJI	CCTAGG	1 cut(s)	232
XmnI	GAANNNNTTC	1 cut(s)	416
XspI	CTAG	3 cut(s)	213, 233, 540
ZraI	GACGTC	1 cut(s)	10
Zsp2I	ATGCAT	1 cut(s)	789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.