Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Reverse (-)

60366274 .. 60369752

Gene Structure 3479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG329400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATTTGGACCTTCTTTGTTGTGCACAAGTGCACAACAGGTGACATTCATGGGCAATATAGCGACCTATTAAGGCTCTTTGAATATGGGGGCTTTCCTCCGAGTGCAAATTATCTGTTTTTAGGTGACTATGTGGATCGTGGCAAGCAGAGTTTAGAAACAATATGCCTCTTGCTCGCGTATAAAATCAAATTTCCAGAGAACTTTTTTCTTCTTAGAGGGAATCACGAATGTGCTTCTATTAATCGTATATATGGTTTTTATGATGAGTGCAAGCGCCGGTTTAATGTCAGACTTTGGAAATCCTTTACCGACAGCTTTAACTGCCTTCCTGTGGCAGCTCTTATAGATGACAAAATATTATGTATGCATGGTGGTCTTTCCCCTGATTTGACAAATTTGGATCAGATCAGGAATTTACCTCGTCCAACTGCTATTCCTGATACTGGCTTGCTTTGCGATTTGCTCTGGTCAGATCCTGGCAGAGATGTTAAGGGATGGGGAATGAATGATAGAGGAGTCTCCTATACATTTGGCCCTGATAAGGTTGCAGAATTTCTAATGAAGCATGATTTGGACCTTGTTTGTCGTGCTCATCAGGTTGTGGAGGATGGTTATGAATTCTTTGCCGACAGACAACTTGTTACAATTTTTTCAGCCCCCAACTACTGTGGTGAATTTGATAATGCTGGTGCCATGATGAGTGTGGATGAGAACCTAATGTGCTCTTTCCAGATTCTTAAGCCAGCAGAGAAAAAAACAACAAAGTTCATGATGTCAACAAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

263

Amino Acids

30.1

Weight (kDa)

5.69

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	13 - 202	3.8e-48	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	692
AccII	CGCG	1 cut(s)	179
AclWI	GGATC	3 cut(s)	144, 411, 470
AcsI	RAATTY	6 cut(s)	191, 397, 415, 554, 620, 677
AfiI	CCNNNNNNNGG	3 cut(s)	334, 446, 544
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	478
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AleI	CACNNNNGTG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	318, 341
AluI	AGCT	2 cut(s)	318, 341
Alw21I	GWGCWC	4 cut(s)	27, 35, 595, 728
Alw26I	GTCTC	1 cut(s)	526
Alw44I	GTGCAC	2 cut(s)	23, 31
AlwI	GGATC	3 cut(s)	144, 411, 470
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	1 cut(s)	535
ApaLI	GTGCAC	2 cut(s)	23, 31
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	6 cut(s)	191, 397, 415, 554, 620, 677
AseI	ATTAAT	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	3 cut(s)	9, 536, 577
AsuHPI	GGTGA	3 cut(s)	53, 137, 686
AvaII	GGWCC	2 cut(s)	9, 577
BaeGI	GKGCMC	2 cut(s)	27, 35
BanI	GGYRCC	1 cut(s)	692
Bbv12I	GWGCWC	4 cut(s)	27, 35, 595, 728
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	492, 605
BciT130I	CCWGG	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	526
BfoI	RGCGCY	1 cut(s)	280
BfrI	CTTAAG	1 cut(s)	740
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	480
Bme18I	GGWCC	2 cut(s)	9, 577
BmgT120I	GGNCC	3 cut(s)	9, 536, 577
BmiI	GGNNCC	1 cut(s)	694
BmrFI	CCNGG	1 cut(s)	480
Bsc4I	CCNNNNNNNGG	3 cut(s)	334, 446, 544
Bse118I	RCCGGY	1 cut(s)	279
Bse1I	ACTGG	1 cut(s)	451
BseBI	CCWGG	1 cut(s)	480
BseGI	GGATG	3 cut(s)	503, 616, 715
BseLI	CCNNNNNNNGG	3 cut(s)	334, 446, 544
BseNI	ACTGG	1 cut(s)	451
BseRI	GAGGAG	1 cut(s)	531
BseSI	GKGCMC	2 cut(s)	27, 35
BseXI	GCAGC	1 cut(s)	350
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	537
BshNI	GGYRCC	1 cut(s)	692
BsiHKAI	GWGCWC	4 cut(s)	27, 35, 595, 728
BsiSI	CCGG	1 cut(s)	280
BslI	CCNNNNNNNGG	3 cut(s)	334, 446, 544
BsmAI	GTCTC	1 cut(s)	526
BsnI	GGCC	1 cut(s)	537
Bsp1286I	GDGCHC	4 cut(s)	27, 35, 595, 728
Bsp143I	GATC	4 cut(s)	136, 403, 408, 475
BspANI	GGCC	1 cut(s)	537
BspFNI	CGCG	1 cut(s)	179
BspHI	TCATGA	1 cut(s)	771
BspLI	GGNNCC	1 cut(s)	694
BspPI	GGATC	3 cut(s)	144, 411, 470
BspT107I	GGYRCC	1 cut(s)	692
BspTI	CTTAAG	1 cut(s)	740
BsrFI	RCCGGY	1 cut(s)	279
BsrI	ACTGG	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	279
BssMI	GATC	4 cut(s)	136, 403, 408, 475
Bst2UI	CCWGG	1 cut(s)	480
Bst4CI	ACNGT	1 cut(s)	671
BstAFI	CTTAAG	1 cut(s)	740
BstC8I	GCNNGC	5 cut(s)	146, 177, 275, 452, 747
BstDEI	CTNAG	1 cut(s)	215
BstF5I	GGATG	3 cut(s)	503, 616, 715
BstFNI	CGCG	1 cut(s)	179
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	139, 406, 411, 478
BstMAI	GTCTC	1 cut(s)	526
BstMBI	GATC	4 cut(s)	136, 403, 408, 475
BstMWI	GCNNNNNNNGC	2 cut(s)	324, 456
BstNI	CCWGG	1 cut(s)	480
BstSCI	CCNGG	1 cut(s)	478
BstSLI	GKGCMC	2 cut(s)	27, 35
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	1 cut(s)	350
BstX2I	RGATCY	1 cut(s)	475
BstYI	RGATCY	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	3 cut(s)	503, 616, 715
Cac8I	GCNNGC	5 cut(s)	146, 177, 275, 452, 747
CaiI	CAGNNNCTG	1 cut(s)	479
CciI	TCATGA	1 cut(s)	771
CfoI	GCGC	1 cut(s)	279
Cfr10I	RCCGGY	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	9, 536, 577
CspCI	CAANNNNNGTGG	2 cut(s)	652, 687
CviAII	CATG	5 cut(s)	50, 371, 569, 697, 772
CviJI	RGCY	8 cut(s)	76, 93, 318, 341, 450, 537, 659, 745
CviKI_1	RGCY	8 cut(s)	76, 93, 318, 341, 450, 537, 659, 745
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	4 cut(s)	138, 405, 410, 477
DpnII	GATC	4 cut(s)	136, 403, 408, 475
Eco47I	GGWCC	2 cut(s)	9, 577
EcoRI	GAATTC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	478
EcoT22I	ATGCAT	1 cut(s)	372
FaeI	CATG	5 cut(s)	53, 374, 572, 700, 775
FatI	CATG	5 cut(s)	49, 370, 568, 696, 771
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	3 cut(s)	510, 623, 722
Fsp4HI	GCNGC	1 cut(s)	339
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	1 cut(s)	339
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	537
HapII	CCGG	1 cut(s)	280
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	5 cut(s)	53, 374, 572, 700, 775
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	780
HindII	GTYRAC	1 cut(s)	780
HinfI	GANTC	3 cut(s)	223, 519, 736
HpaII	CCGG	1 cut(s)	280
HphI	GGTGA	3 cut(s)	53, 137, 686
Hpy166II	GTNNAC	3 cut(s)	25, 33, 780
Hpy188I	TCNGA	4 cut(s)	102, 293, 408, 475
Hpy188III	TCNNGA	6 cut(s)	197, 227, 412, 440, 733, 772
Hpy8I	GTNNAC	3 cut(s)	25, 33, 780
HpyAV	CCTTC	2 cut(s)	22, 338
HpyCH4III	ACNGT	1 cut(s)	671
HpyCH4V	TGCA	6 cut(s)	25, 33, 107, 273, 370, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	324, 456
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	5 cut(s)	53, 374, 572, 700, 775
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	136, 403, 408, 475
Lsp1109I	GCAGC	1 cut(s)	350
MaeIII	GTNAC	3 cut(s)	41, 125, 643
MalI	GATC	4 cut(s)	138, 405, 410, 477
MboI	GATC	4 cut(s)	136, 403, 408, 475
MboII	GAAGA	1 cut(s)	203
MflI	RGATCY	1 cut(s)	475
MhlI	GDGCHC	4 cut(s)	27, 35, 595, 728
MluCI	AATT	8 cut(s)	109, 191, 397, 415, 554, 620, 648, 677
MlyI	GAGTC	1 cut(s)	528
MmeI	TCCRAC	1 cut(s)	452
MnlI	CCTC	6 cut(s)	108, 179, 212, 432, 509, 601
Mph1103I	ATGCAT	1 cut(s)	372
MseI	TTAA	6 cut(s)	71, 243, 285, 321, 492, 741
MslI	CAYNNNNRTG	1 cut(s)	231
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	1 cut(s)	280
MspR9I	CCNGG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	480
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	2 cut(s)	324, 456
NdeII	GATC	4 cut(s)	136, 403, 408, 475
NlaIII	CATG	5 cut(s)	53, 374, 572, 700, 775
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	2 cut(s)	41, 125
NsiI	ATGCAT	1 cut(s)	372
OliI	CACNNNNGTG	1 cut(s)	231
PagI	TCATGA	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	223, 736
PkrI	GCNGC	1 cut(s)	340
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
PshBI	ATTAAT	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	478
PspGI	CCWGG	1 cut(s)	478
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	3 cut(s)	9, 536, 577
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	6 cut(s)	71, 243, 285, 321, 492, 741
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	136, 403, 408, 475
Sau96I	GGNCC	3 cut(s)	9, 536, 577
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	1 cut(s)	480
SduI	GDGCHC	4 cut(s)	27, 35, 595, 728
SinI	GGWCC	2 cut(s)	9, 577
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	8 cut(s)	109, 191, 397, 415, 554, 620, 648, 677
SspI	AATATT	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	478
TaaI	ACNGT	1 cut(s)	671
TasI	AATT	8 cut(s)	109, 191, 397, 415, 554, 620, 648, 677
TfiI	GAWTC	2 cut(s)	223, 736
Tru1I	TTAA	6 cut(s)	71, 243, 285, 321, 492, 741
Tru9I	TTAA	6 cut(s)	71, 243, 285, 321, 492, 741
TseFI	GTSAC	2 cut(s)	41, 125
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	2 cut(s)	41, 125
TspDTI	ATGAA	5 cut(s)	38, 521, 578, 633, 760
Vha464I	CTTAAG	1 cut(s)	740
VneI	GTGCAC	2 cut(s)	23, 31
VpaK11BI	GGWCC	2 cut(s)	9, 577
VspI	ATTAAT	1 cut(s)	243
XapI	RAATTY	6 cut(s)	191, 397, 415, 554, 620, 677
XcmI	CCANNNNNNNNNTGG	1 cut(s)	703
Zsp2I	ATGCAT	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.