Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Reverse (-)

18326749 .. 18330641

Gene Structure 3893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCGGCGCAGGGGCAGGGAGCTATGGACCCTGCCGTGCTCGATGACATAATCCGGCGGCTCACGGAGGTCCGATTGGCCAGGCCGGGGAAGCAGGTCCAGCTCTCCGAGTCCGAGATCAAACAGCTCTGTGTTGCTTCCAGGGAAATCTTTCTTCAGCAGCCTAATTTGCTCGAGCTTGAAGCTCCTATCAAAATTTGCGGTGACATTCATGGGCAATATAGTGACCTACTAAGGCTCTTTGAATATGGGGGCTTTCCTCCTAGTGCAAATTATCTGTTTTTAGGTGACTATGTGGATCGTGGCAAGCAGAGTTTAGAAACAATATGCCTCCTGCTTGCATATAAAATCAAATTTCCGGAGAACTTTTTTCTTCTTAGAGGGAATCACGAATGTGCTTCTATTAATCGTATATATGGTTTCTATGATGAGTGCAAGCGCCGGTTTAATGTCAGACTTTGGAAATCCTTTACCGACAGCTTTAACTGCCTTCCTGTCGCAGCTCTTATAGATGACAAAATATTATGTATGCATGGTGGTCTTTCCCCTGATTTGACAAATTTGGATCAGATCAGGAATTTGCCTCGTCCAACTGCTATCCCTGATACTGGCTTGCTATGCGATTTGCTCTGGTCAGATCCTGGCAGAGATGTTAAGGGATGGGGAATGAATGATAGAGGAGTCTCCTATACATTTGGCCCTGATAAGGTGGCAGAATTTTTAATGAAGCATGACTTGGACCTTGTTTGTCGTGCTCATCAGGTTGTGGAGGATGGTTATGAATTCTTTGCCGACAGACAACTTGTTACAATTTTCTCAGCCCCCAACTACTGTGGTGAATTTGACAATGCTGGTGCCATGATGAGTGTAGATGAGAACTTAATGTGCTCCTTCCAGATTCTTAAGCCAGCAGAGAAAAAAACAAAGTTCATGATGTCAACAAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

317

Amino Acids

35.82

Weight (kDa)

5.37

Isoelectric Point (pI)

42.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	14 - 61	2.4e-21	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	63 - 256	1.2e-49	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	854
AccIII	TCCGGA	1 cut(s)	358
AciI	CCGC	3 cut(s)	5, 58, 201
AclWI	GGATC	3 cut(s)	306, 573, 632
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	7 cut(s)	195, 353, 559, 577, 716, 782, 839
AcuI	CTGAAG	1 cut(s)	140
AfiI	CCNNNNNNNGG	3 cut(s)	87, 608, 706
AflII	CTTAAG	1 cut(s)	902
AgsI	TTSAA	2 cut(s)	182, 245
AjnI	CCWGG	3 cut(s)	80, 140, 640
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	7 cut(s)	23, 103, 127, 178, 185, 480, 503
AluI	AGCT	7 cut(s)	23, 103, 127, 178, 185, 480, 503
Alw21I	GWGCWC	3 cut(s)	42, 757, 890
Alw26I	GTCTC	1 cut(s)	688
AlwI	GGATC	3 cut(s)	306, 573, 632
AlwNI	CAGNNNCTG	1 cut(s)	641
Ama87I	CYCGRG	1 cut(s)	173
Aor13HI	TCCGGA	1 cut(s)	358
AoxI	GGCC	3 cut(s)	78, 83, 697
ApeKI	GCWGC	2 cut(s)	160, 500
ApoI	RAATTY	7 cut(s)	195, 353, 559, 577, 716, 782, 839
AseI	ATTAAT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	10, 441
AspS9I	GGNCC	5 cut(s)	28, 70, 97, 698, 739
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	3 cut(s)	215, 299, 848
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	4 cut(s)	28, 70, 97, 739
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	854
Bbv12I	GWGCWC	3 cut(s)	42, 757, 890
BbvI	GCAGC	2 cut(s)	172, 512
BccI	CCATC	2 cut(s)	654, 767
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	3 cut(s)	82, 142, 642
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	688
BfaI	CTAG	1 cut(s)	264
BfoI	RGCGCY	1 cut(s)	442
BfrI	CTTAAG	1 cut(s)	902
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	4 cut(s)	6, 59, 161, 501
BlsI	GCNGC	4 cut(s)	7, 60, 162, 502
Bme1390I	CCNGG	4 cut(s)	82, 87, 142, 642
Bme18I	GGWCC	4 cut(s)	28, 70, 97, 739
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	5 cut(s)	28, 70, 97, 698, 739
BmiI	GGNNCC	2 cut(s)	30, 856
BmrFI	CCNGG	4 cut(s)	82, 87, 142, 642
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	86, 141
BsaWI	WCCGGW	1 cut(s)	358
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 608, 706
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	613
BseAI	TCCGGA	1 cut(s)	358
BseBI	CCWGG	3 cut(s)	82, 142, 642
BseDI	CCNNGG	2 cut(s)	86, 141
BseGI	GGATG	2 cut(s)	665, 778
BseLI	CCNNNNNNNGG	3 cut(s)	87, 608, 706
BseMII	CTCAG	1 cut(s)	831
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	1 cut(s)	693
BseXI	GCAGC	2 cut(s)	172, 512
BshFI	GGCC	3 cut(s)	80, 85, 699
BshNI	GGYRCC	1 cut(s)	854
BsiHKAI	GWGCWC	3 cut(s)	42, 757, 890
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	4 cut(s)	55, 86, 359, 442
BslI	CCNNNNNNNGG	3 cut(s)	87, 608, 706
BsmAI	GTCTC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	80, 85, 699
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	42, 757, 890
Bsp13I	TCCGGA	1 cut(s)	358
Bsp143I	GATC	5 cut(s)	117, 298, 565, 570, 637
BspACI	CCGC	3 cut(s)	5, 58, 201
BspANI	GGCC	3 cut(s)	80, 85, 699
BspCNI	CTCAG	1 cut(s)	830
BspEI	TCCGGA	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	930
BspLI	GGNNCC	2 cut(s)	30, 856
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	3 cut(s)	306, 573, 632
BspT107I	GGYRCC	1 cut(s)	854
BspTI	CTTAAG	1 cut(s)	902
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	613
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	2 cut(s)	86, 141
BssMI	GATC	5 cut(s)	117, 298, 565, 570, 637
Bst2UI	CCWGG	3 cut(s)	82, 142, 642
Bst4CI	ACNGT	1 cut(s)	833
BstAFI	CTTAAG	1 cut(s)	902
BstC8I	GCNNGC	5 cut(s)	308, 339, 437, 614, 909
BstDEI	CTNAG	3 cut(s)	233, 377, 817
BstF5I	GGATG	2 cut(s)	665, 778
BstH2I	RGCGCY	1 cut(s)	442
BstHHI	GCGC	2 cut(s)	10, 441
BstKTI	GATC	5 cut(s)	120, 301, 568, 573, 640
BstMAI	GTCTC	1 cut(s)	688
BstMBI	GATC	5 cut(s)	117, 298, 565, 570, 637
BstMWI	GCNNNNNNNGC	5 cut(s)	91, 100, 169, 486, 618
BstNI	CCWGG	3 cut(s)	82, 142, 642
BstSCI	CCNGG	4 cut(s)	80, 85, 140, 640
BstV1I	GCAGC	2 cut(s)	172, 512
BstX2I	RGATCY	1 cut(s)	637
BstYI	RGATCY	1 cut(s)	637
BsuRI	GGCC	3 cut(s)	80, 85, 699
BtsCI	GGATG	2 cut(s)	665, 778
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	5 cut(s)	308, 339, 437, 614, 909
CaiI	CAGNNNCTG	1 cut(s)	641
CciI	TCATGA	1 cut(s)	930
CfoI	GCGC	2 cut(s)	10, 441
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	5 cut(s)	28, 70, 97, 698, 739
CspCI	CAANNNNNGTGG	2 cut(s)	814, 849
CviAII	CATG	5 cut(s)	212, 533, 731, 859, 931
DdeI	CTNAG	3 cut(s)	233, 377, 817
DpnI	GATC	5 cut(s)	119, 300, 567, 572, 639
DpnII	GATC	5 cut(s)	117, 298, 565, 570, 637
EaeI	YGGCCR	1 cut(s)	78
Eco47I	GGWCC	4 cut(s)	28, 70, 97, 739
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	3 cut(s)	80, 140, 640
EcoT22I	ATGCAT	1 cut(s)	534
FaeI	CATG	5 cut(s)	215, 536, 734, 862, 934
FalI	AAGNNNNNCTT	2 cut(s)	719, 751
FatI	CATG	5 cut(s)	211, 532, 730, 858, 930
Fnu4HI	GCNGC	4 cut(s)	6, 59, 161, 501
FokI	GGATG	2 cut(s)	672, 785
Fsp4HI	GCNGC	4 cut(s)	6, 59, 161, 501
FspBI	CTAG	1 cut(s)	264
GlaI	GCGC	2 cut(s)	9, 440
GluI	GCNGC	4 cut(s)	6, 59, 161, 501
HaeII	RGCGCY	1 cut(s)	442
HaeIII	GGCC	3 cut(s)	80, 85, 699
HapII	CCGG	4 cut(s)	55, 86, 359, 442
HhaI	GCGC	2 cut(s)	10, 441
Hin1II	CATG	5 cut(s)	215, 536, 734, 862, 934
Hin6I	GCGC	2 cut(s)	8, 439
HinP1I	GCGC	2 cut(s)	8, 439
HincII	GTYRAC	1 cut(s)	939
HindII	GTYRAC	1 cut(s)	939
HinfI	GANTC	4 cut(s)	110, 385, 681, 898
HpaII	CCGG	4 cut(s)	55, 86, 359, 442
HphI	GGTGA	3 cut(s)	215, 299, 848
Hpy166II	GTNNAC	1 cut(s)	939
Hpy188I	TCNGA	6 cut(s)	74, 109, 115, 455, 570, 637
Hpy188III	TCNNGA	5 cut(s)	359, 389, 574, 895, 931
Hpy8I	GTNNAC	1 cut(s)	939
HpyAV	CCTTC	2 cut(s)	500, 901
HpyCH4III	ACNGT	1 cut(s)	833
HpyCH4V	TGCA	4 cut(s)	269, 341, 435, 532
HpyF10VI	GCNNNNNNNGC	5 cut(s)	91, 100, 169, 486, 618
HpyF3I	CTNAG	3 cut(s)	233, 377, 817
Hsp92II	CATG	5 cut(s)	215, 536, 734, 862, 934
HspAI	GCGC	2 cut(s)	8, 439
Kpn2I	TCCGGA	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	117, 298, 565, 570, 637
LmnI	GCTCC	3 cut(s)	20, 190, 893
Lsp1109I	GCAGC	2 cut(s)	172, 512
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	4 cut(s)	203, 224, 287, 805
MalI	GATC	5 cut(s)	119, 300, 567, 572, 639
MboI	GATC	5 cut(s)	117, 298, 565, 570, 637
MboII	GAAGA	2 cut(s)	146, 365
MflI	RGATCY	1 cut(s)	637
MhlI	GDGCHC	3 cut(s)	42, 757, 890
MlsI	TGGCCA	1 cut(s)	80
MluNI	TGGCCA	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	119, 690
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	7 cut(s)	61, 270, 341, 374, 594, 671, 763
Mox20I	TGGCCA	1 cut(s)	80
Mph1103I	ATGCAT	1 cut(s)	534
MroI	TCCGGA	1 cut(s)	358
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	7 cut(s)	405, 447, 483, 654, 722, 881, 903
MslI	CAYNNNNRTG	1 cut(s)	393
Msp20I	TGGCCA	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	902
MspI	CCGG	4 cut(s)	55, 86, 359, 442
MspR9I	CCNGG	4 cut(s)	82, 87, 142, 642
MvaI	CCWGG	3 cut(s)	82, 142, 642
MwoI	GCNNNNNNNGC	5 cut(s)	91, 100, 169, 486, 618
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	5 cut(s)	117, 298, 565, 570, 637
NlaIII	CATG	5 cut(s)	215, 536, 734, 862, 934
NlaIV	GGNNCC	2 cut(s)	30, 856
NmuCI	GTSAC	3 cut(s)	203, 224, 287
NsiI	ATGCAT	1 cut(s)	534
OliI	CACNNNNGTG	1 cut(s)	393
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	930
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	385, 898
PkrI	GCNGC	4 cut(s)	7, 60, 162, 502
PleI	GAGTC	2 cut(s)	118, 689
PpsI	GAGTC	2 cut(s)	118, 689
PshBI	ATTAAT	1 cut(s)	405
Psp6I	CCWGG	3 cut(s)	80, 140, 640
PspGI	CCWGG	3 cut(s)	80, 140, 640
PspN4I	GGNNCC	2 cut(s)	30, 856
PspPI	GGNCC	5 cut(s)	28, 70, 97, 698, 739
PspXI	VCTCGAGB	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	641
PsuI	RGATCY	1 cut(s)	637
RseI	CAYNNNNRTG	1 cut(s)	393
SaqAI	TTAA	7 cut(s)	405, 447, 483, 654, 722, 881, 903
SatI	GCNGC	4 cut(s)	6, 59, 161, 501
Sau3AI	GATC	5 cut(s)	117, 298, 565, 570, 637
Sau96I	GGNCC	5 cut(s)	28, 70, 97, 698, 739
SchI	GAGTC	2 cut(s)	119, 690
ScrFI	CCNGG	4 cut(s)	82, 87, 142, 642
SduI	GDGCHC	3 cut(s)	42, 757, 890
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	4 cut(s)	28, 70, 97, 739
SlaI	CTCGAG	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	393
SmlI	CTYRAG	2 cut(s)	173, 902
SmoI	CTYRAG	2 cut(s)	173, 902
SsiI	CCGC	3 cut(s)	5, 58, 201
SspI	AATATT	1 cut(s)	522
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	4 cut(s)	80, 85, 140, 640
TaaI	ACNGT	1 cut(s)	833
TaqI	TCGA	2 cut(s)	42, 174
TauI	GCSGC	2 cut(s)	8, 61
TfiI	GAWTC	2 cut(s)	385, 898
Tru1I	TTAA	7 cut(s)	405, 447, 483, 654, 722, 881, 903
Tru9I	TTAA	7 cut(s)	405, 447, 483, 654, 722, 881, 903
TseFI	GTSAC	3 cut(s)	203, 224, 287
TseI	GCWGC	2 cut(s)	160, 500
Tsp45I	GTSAC	3 cut(s)	203, 224, 287
TspDTI	ATGAA	5 cut(s)	200, 683, 740, 795, 919
TspGWI	ACGGA	1 cut(s)	80
Vha464I	CTTAAG	1 cut(s)	902
VpaK11BI	GGWCC	4 cut(s)	28, 70, 97, 739
VspI	ATTAAT	1 cut(s)	405
XapI	RAATTY	7 cut(s)	195, 353, 559, 577, 716, 782, 839
XhoI	CTCGAG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.