Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Reverse (-)

46186767 .. 46187470

Gene Structure 704 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0343500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGTGACCATCAACAAGAGGAACCTGTCTCAAAAGAGAATTAATCAGTCAACAGGGACACGAACCTATGCTAGTTTGGTTCATGAATATGAACTTCTGCATGGTAAAGAGCCAAATAGATGGGAATTGTTTAAATTAACACACCGAAAGGCAGGAACTCAAGAGCCAATTGATGCAGCAAGTGCAAAAGCAATTGCGGATTTTGAAGAGGCCGAACAAAAGAGGCTAAGCATGAATGTTGACATCACTGCTCCAGAAATTCGTGAAGAGATGTATGCTGAGGTTCTTGGTGAGGAGAAGGGAAACCGAGTATGGGGTCTTGGAGCTGGGGTTACTTGGGATGAAGTTCCTGGAATTCATGTGGAAGAGCGAGGTGTTTCAAAGGAAGTGCAACTCTTGCGAGAGCGATTAGAAGCACAAACCAAAGAGGCACAAGAGAGGGAAGCACGTCTAATGGATGAATTACAAAGGAAAATGGCTGTTGATATCACTTATACCACATACCGCCAAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

171

Amino Acids

19.68

Weight (kDa)

5.7

Isoelectric Point (pI)

39.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	8 - 112	3e-11	Plant transposase (Ptta/En/Spm family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	197, 505
AcsI	RAATTY	2 cut(s)	258, 354
AfiI	CCNNNNNNNGG	1 cut(s)	313
AgsI	TTSAA	2 cut(s)	206, 381
AjiI	CACGTC	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	1 cut(s)	326
AluI	AGCT	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	2 cut(s)	258, 354
AseI	ATTAAT	1 cut(s)	42
AsuHPI	GGTGA	2 cut(s)	16, 302
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	2 cut(s)	17, 114
BciT130I	CCWGG	1 cut(s)	351
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	177
BlpI	GCTNAGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	351
BmgBI	CACGTC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	23
BmrFI	CCNGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	163
BpmI	CTGGAG	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	279
Bpu1102I	GCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	1 cut(s)	144
BsaXI	ACNNNNNCTCC	2 cut(s)	315, 345
Bsc4I	CCNNNNNNNGG	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	351
BseGI	GGATG	2 cut(s)	346, 463
BseLI	CCNNNNNNNGG	1 cut(s)	313
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	1 cut(s)	188
BseYI	CCCAGC	1 cut(s)	326
BshFI	GGCC	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	70
BslI	CCNNNNNNNGG	1 cut(s)	313
BsmAI	GTCTC	1 cut(s)	33
BsmFI	GGGAC	1 cut(s)	70
BsnI	GGCC	1 cut(s)	212
Bsp1720I	GCTNAGC	1 cut(s)	227
BspACI	CCGC	2 cut(s)	197, 505
BspANI	GGCC	1 cut(s)	212
BspCNI	CTCAG	1 cut(s)	271
BspHI	TCATGA	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	23
BspQI	GCTCTTC	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	351
Bst6I	CTCTTC	3 cut(s)	201, 261, 360
BstAPI	GCANNNNNTGC	2 cut(s)	182, 397
BstDEI	CTNAG	2 cut(s)	227, 279
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	2 cut(s)	346, 463
BstMAI	GTCTC	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 397
BstNI	CCWGG	1 cut(s)	351
BstPI	GGTNACC	1 cut(s)	4
BstSCI	CCNGG	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	188
BstXI	CCANNNNNNTGG	1 cut(s)	120
BsuRI	GGCC	1 cut(s)	212
BtrI	CACGTC	1 cut(s)	449
BtsCI	GGATG	2 cut(s)	346, 463
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
CciI	TCATGA	1 cut(s)	82
CviAII	CATG	4 cut(s)	83, 101, 232, 359
CviJI	RGCY	6 cut(s)	112, 166, 212, 226, 326, 479
CviKI_1	RGCY	6 cut(s)	112, 166, 212, 226, 326, 479
DdeI	CTNAG	2 cut(s)	227, 279
DraI	TTTAAA	1 cut(s)	133
Eam1104I	CTCTTC	3 cut(s)	201, 261, 360
EarI	CTCTTC	3 cut(s)	201, 261, 360
Eco32I	GATATC	1 cut(s)	487
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	487
FaeI	CATG	4 cut(s)	86, 104, 235, 362
FaqI	GGGAC	1 cut(s)	70
FatI	CATG	4 cut(s)	82, 100, 231, 358
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	2 cut(s)	353, 470
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	72
GluI	GCNGC	1 cut(s)	177
GsaI	CCCAGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	212
Hin1II	CATG	4 cut(s)	86, 104, 235, 362
HincII	GTYRAC	2 cut(s)	51, 241
HindII	GTYRAC	2 cut(s)	51, 241
HphI	GGTGA	2 cut(s)	16, 302
Hpy166II	GTNNAC	2 cut(s)	51, 241
Hpy188III	TCNNGA	4 cut(s)	83, 161, 254, 263
Hpy8I	GTNNAC	2 cut(s)	51, 241
HpyAV	CCTTC	1 cut(s)	292
HpyCH4IV	ACGT	1 cut(s)	448
HpyCH4V	TGCA	4 cut(s)	100, 176, 185, 391
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 397
HpyF3I	CTNAG	2 cut(s)	227, 279
HpySE526I	ACGT	1 cut(s)	448
Hsp92II	CATG	4 cut(s)	86, 104, 235, 362
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	2 cut(s)	256, 323
LpnPI	CCDG	7 cut(s)	38, 39, 138, 267, 312, 336, 363
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	72
MaeII	ACGT	1 cut(s)	448
MaeIII	GTNAC	2 cut(s)	4, 331
MboII	GAAGA	3 cut(s)	218, 278, 377
MfeI	CAATTG	2 cut(s)	168, 192
MluCI	AATT	8 cut(s)	39, 125, 134, 168, 192, 258, 354, 461
MnlI	CCTC	8 cut(s)	12, 202, 216, 274, 286, 365, 421, 432
MseI	TTAA	3 cut(s)	42, 132, 137
MslI	CAYNNNNRTG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	351
MunI	CAATTG	2 cut(s)	168, 192
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	182, 397
NlaIII	CATG	4 cut(s)	86, 104, 235, 362
NlaIV	GGNNCC	1 cut(s)	23
NmuCI	GTSAC	1 cut(s)	4
PagI	TCATGA	1 cut(s)	82
PciSI	GCTCTTC	1 cut(s)	360
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	1 cut(s)	178
PshBI	ATTAAT	1 cut(s)	42
Psp6I	CCWGG	1 cut(s)	349
PspEI	GGTNACC	1 cut(s)	4
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	87
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	42, 132, 137
SatI	GCNGC	1 cut(s)	177
ScrFI	CCNGG	1 cut(s)	351
SetI	ASST	6 cut(s)	27, 68, 285, 328, 376, 451
SfaNI	GCATC	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	159
SmoI	CTYRAG	1 cut(s)	159
Sse9I	AATT	8 cut(s)	39, 125, 134, 168, 192, 258, 354, 461
SsiI	CCGC	2 cut(s)	197, 505
SspMI	CTAG	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	349
TaiI	ACGT	1 cut(s)	451
TasI	AATT	8 cut(s)	39, 125, 134, 168, 192, 258, 354, 461
Tru1I	TTAA	3 cut(s)	42, 132, 137
Tru9I	TTAA	3 cut(s)	42, 132, 137
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	4
TspDTI	ATGAA	7 cut(s)	71, 99, 105, 248, 347, 357, 474
TspRI	CASTG	1 cut(s)	253
VspI	ATTAAT	1 cut(s)	42
XapI	RAATTY	2 cut(s)	258, 354
XspI	CTAG	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.