Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Reverse (-)

21485535 .. 21486037

Gene Structure 503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCATGGTGGTCTTTCCCCTGATTTGACAAACTTGGATCAGATCAGAAACTTACCTCGTCCAACTGCTGTTCCTGATACTGGATTGCTTTGCGATTTGCTCTGGTCAGATCCTGGTAGAGATGTTAAGGGATGGGGAATGAATGACAGAGGAGTCTCATATACATTCGGCCCTGATAAGGTGGCAGAATTTTTAATGAAGCATGATTTGGACCTTGTTTGTCGTGCCCATCAGGTTGTGGAAGATGGTTATGAGTTCTTTGCGGACAGGCAACTTGTTACAATTTTTTCAGCTCCCAACTACTGTGGTGAGTTTGACAATGCTGGTGCAATGATGAGCGTAGATGAAAACTTAATGTGCTCTTTCCAGATTCTTAAGCCAGCTGAGAAAAAAGCTAAGTTCATGATGTCAACAAAAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

141

Amino Acids

15.65

Weight (kDa)

4.92

Isoelectric Point (pI)

23.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	1 - 80	3.7e-14	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	152
AciI	CCGC	1 cut(s)	263
AclWI	GGATC	2 cut(s)	45, 104
AcsI	RAATTY	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	80, 178
AflII	CTTAAG	1 cut(s)	374
AjnI	CCWGG	1 cut(s)	112
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AluBI	AGCT	3 cut(s)	293, 383, 395
AluI	AGCT	3 cut(s)	293, 383, 395
Alw21I	GWGCWC	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	45, 104
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	169
ApoI	RAATTY	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	170, 211
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	362
BccI	CCATC	3 cut(s)	126, 237, 239
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	160
BfrI	CTTAAG	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	114
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	2 cut(s)	170, 211
BmrFI	CCNGG	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	2 cut(s)	80, 178
Bse1I	ACTGG	1 cut(s)	85
Bse3DI	GCAATG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	114
BseGI	GGATG	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	80, 178
BseMI	GCAATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	85
BseRI	GAGGAG	1 cut(s)	165
BseSI	GKGCMC	1 cut(s)	229
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	362
BslI	CCNNNNNNNGG	2 cut(s)	80, 178
BsmAI	GTCTC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	171
Bsp1286I	GDGCHC	2 cut(s)	229, 362
Bsp143I	GATC	3 cut(s)	37, 42, 109
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	402
BspPI	GGATC	2 cut(s)	45, 104
BspTI	CTTAAG	1 cut(s)	374
BsrDI	GCAATG	1 cut(s)	336
BsrI	ACTGG	1 cut(s)	85
BssMI	GATC	3 cut(s)	37, 42, 109
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	305
BstAFI	CTTAAG	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	381
BstDEI	CTNAG	2 cut(s)	384, 396
BstF5I	GGATG	1 cut(s)	137
BstKTI	GATC	3 cut(s)	40, 45, 112
BstMAI	GTCTC	1 cut(s)	160
BstMBI	GATC	3 cut(s)	37, 42, 109
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	229
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	137
Cac8I	GCNNGC	1 cut(s)	381
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	170, 211
CspCI	CAANNNNNGTGG	2 cut(s)	286, 321
CviAII	CATG	3 cut(s)	5, 203, 403
CviJI	RGCY	5 cut(s)	171, 293, 379, 383, 395
CviKI_1	RGCY	5 cut(s)	171, 293, 379, 383, 395
DdeI	CTNAG	2 cut(s)	384, 396
DpnI	GATC	3 cut(s)	39, 44, 111
DpnII	GATC	3 cut(s)	37, 42, 109
DrdI	GACNNNNNNGTC	1 cut(s)	152
DseDI	GACNNNNNNGTC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	112
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	3 cut(s)	8, 206, 406
FaiI	YATR	6 cut(s)	6, 160, 162, 204, 252, 404
FatI	CATG	3 cut(s)	4, 202, 402
FokI	GGATG	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	3 cut(s)	8, 206, 406
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	2 cut(s)	153, 370
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	411
Hpy188I	TCNGA	3 cut(s)	42, 47, 109
Hpy188III	TCNNGA	3 cut(s)	74, 367, 403
Hpy8I	GTNNAC	1 cut(s)	411
HpyCH4III	ACNGT	1 cut(s)	305
HpyCH4V	TGCA	2 cut(s)	4, 329
HpyF3I	CTNAG	2 cut(s)	384, 396
Hsp92II	CATG	3 cut(s)	8, 206, 406
Kzo9I	GATC	3 cut(s)	37, 42, 109
LmnI	GCTCC	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	39, 44, 111
MboI	GATC	3 cut(s)	37, 42, 109
MboII	GAAGA	1 cut(s)	254
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	229, 362
MluCI	AATT	2 cut(s)	188, 282
MlyI	GAGTC	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	2 cut(s)	66, 143
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	126, 194, 353, 375
MspA1I	CMGCKG	1 cut(s)	383
MspCI	CTTAAG	1 cut(s)	374
MspR9I	CCNGG	1 cut(s)	114
MvaI	CCWGG	1 cut(s)	114
NdeII	GATC	3 cut(s)	37, 42, 109
NlaIII	CATG	3 cut(s)	8, 206, 406
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	370
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspPI	GGNCC	2 cut(s)	170, 211
PstNI	CAGNNNCTG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	109
PvuII	CAGCTG	1 cut(s)	383
SaqAI	TTAA	4 cut(s)	126, 194, 353, 375
Sau3AI	GATC	3 cut(s)	37, 42, 109
Sau96I	GGNCC	2 cut(s)	170, 211
SchI	GAGTC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	2 cut(s)	229, 362
SetI	ASST	7 cut(s)	58, 183, 216, 237, 295, 385, 397
SinI	GGWCC	1 cut(s)	211
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	2 cut(s)	188, 282
SsiI	CCGC	1 cut(s)	263
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	1 cut(s)	305
TasI	AATT	2 cut(s)	188, 282
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	4 cut(s)	126, 194, 353, 375
Tru9I	TTAA	4 cut(s)	126, 194, 353, 375
TspDTI	ATGAA	4 cut(s)	155, 212, 360, 391
Vha464I	CTTAAG	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.