Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0011652

Physical Location & Seq

Genomic Coordinates Reverse (-)

24992947 .. 24997431

Gene Structure 4485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1140800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCATCGCAGGGGCAGGGAGGGATGGACCCTGCCGTGCTCGACGACATAATCAAGCGGCTCACGGAGGTCCGATTGGCCAGGCCGGGTAAGCAGGTTCAGCTCTCGGAGGCGGAGATCAAACAGCTCTGTGGCGCTTCCAGGGAAATCTTTCTTCAGCAGCCCAATTTGCTCGAGCTTGAAGCCCCAATCAAAATTTGCGGTGACATTCATGGACAATACAGTGACCTTTTAAGGCTATTTGAATATGGTGGTTTTCCTCCCAGTGCAAATTATCTGTTCCTAGATGACAAAATTTTATGCATGCATGGTGGTCTTTCCCCTGATTTGACAAACTTGGATCAGATCAGAAACTTAACTCGTCCGACTGCTGTTCCTGATACTGGATTGCTTTGCGATTTGCTATGGTCAGATCCTGGTAGAGATGTTAAGGGATGGGGAATGAATGACAGAGGTGTCTCGTATACATTCGGCGCCGATAAGGTGGCAGAATTCTTAACGAAACATGATTTGGACCTTGTTTGTCGTGCTCATCAGGTTGTGGAAGATGGTTATGAGTTCTTTGCGGACAGGCAACTTGTTACAATTTTTTCAGCTCCCAACTACTGTGGTGAGTTTGACAATGCTGGTGCAATGATGAGTGTAGATGAAAACTTAATGTGCTCTTTCCAGATTCTTAAGCCGGCTGAGAAAAAAGCCAAGTTCATGATGTCAACAAAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

242

Amino Acids

26.83

Weight (kDa)

4.88

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	14 - 61	1.2e-21	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	91 - 181	2.6e-17	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39840
fragaria_vesca	FvH4_7g23530
malus_domestica	MD01G1140800.v1.1 MD07G1205100.v1.1
prunus_persica	Prupe.2G241300_v2.0.a1 Prupe.2G241300_v2.0.a1
pyrus_communis	pycom07g19160
rosa_chinensis	RchiOBHm_Chr1g0368671
rosa_laevigata	RLG00000027198
rosa_multiflora	Rmu_sc0001791.1_g000012
rosa_roxburghii	Rroxscaffold_4G00288370
rosa_rugosa	Rorug01G0343500 Rorug01G0343600
rosa_samantha	Rh1AG350900 Rh1AG351000 Rh1BG314600 Rh1CG329400
rosa_wichuraiana	Rw0G021670 Rw0G021680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	455
Acc36I	ACCTGC	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	464
AciI	CCGC	4 cut(s)	58, 113, 201, 566
AclWI	GGATC	2 cut(s)	348, 407
AcoI	YGGCCR	1 cut(s)	78
AcsI	RAATTY	3 cut(s)	195, 294, 491
AcuI	CTGAAG	1 cut(s)	140
AcyI	GRCGYC	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	383
AflII	CTTAAG	1 cut(s)	677
AgsI	TTSAA	2 cut(s)	182, 245
AjnI	CCWGG	3 cut(s)	80, 140, 415
AjuI	GAANNNNNNNTTGG	2 cut(s)	494, 526
AluBI	AGCT	4 cut(s)	103, 127, 178, 596
AluI	AGCT	4 cut(s)	103, 127, 178, 596
Alw21I	GWGCWC	3 cut(s)	42, 532, 665
Alw26I	GTCTC	1 cut(s)	463
AlwI	GGATC	2 cut(s)	348, 407
AlwNI	CAGNNNCTG	1 cut(s)	416
Ama87I	CYCGRG	1 cut(s)	173
AoxI	GGCC	2 cut(s)	78, 83
ApeKI	GCWGC	1 cut(s)	160
ApoI	RAATTY	3 cut(s)	195, 294, 491
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	2 cut(s)	137, 476
AspS9I	GGNCC	3 cut(s)	28, 70, 514
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	215, 623
AvaI	CYCGRG	1 cut(s)	173
AvaII	GGWCC	3 cut(s)	28, 70, 514
BalI	TGGCCA	1 cut(s)	80
BanI	GGYRCC	1 cut(s)	473
Bbv12I	GWGCWC	3 cut(s)	42, 532, 665
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	3 cut(s)	19, 429, 542
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	3 cut(s)	82, 142, 417
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	463
BfaI	CTAG	1 cut(s)	284
BfoI	RGCGCY	2 cut(s)	138, 477
BfrI	CTTAAG	1 cut(s)	677
BfuAI	ACCTGC	1 cut(s)	85
BisI	GCNGC	2 cut(s)	59, 161
BlsI	GCNGC	2 cut(s)	60, 162
Bme1390I	CCNGG	4 cut(s)	82, 87, 142, 417
Bme18I	GGWCC	3 cut(s)	28, 70, 514
BmeT110I	CYCGRG	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	28, 70, 514
BmiI	GGNNCC	2 cut(s)	30, 475
BmrFI	CCNGG	4 cut(s)	82, 87, 142, 417
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	258
BpuMI	CCSGG	1 cut(s)	87
BsaHI	GRCGYC	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse118I	RCCGGY	1 cut(s)	682
Bse1I	ACTGG	2 cut(s)	264, 388
Bse3DI	GCAATG	1 cut(s)	639
BseBI	CCWGG	3 cut(s)	82, 142, 417
BseDI	CCNNGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	30, 440
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	639
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	264, 388
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	2 cut(s)	80, 85
BshNI	GGYRCC	1 cut(s)	473
BsiHKAI	GWGCWC	3 cut(s)	42, 532, 665
BsiHKCI	CYCGRG	1 cut(s)	173
BsiSI	CCGG	2 cut(s)	86, 683
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	80, 85
BsoBI	CYCGRG	1 cut(s)	173
Bsp1286I	GDGCHC	3 cut(s)	42, 532, 665
Bsp143I	GATC	4 cut(s)	117, 340, 345, 412
BspACI	CCGC	4 cut(s)	58, 113, 201, 566
BspANI	GGCC	2 cut(s)	80, 85
BspCNI	CTCAG	1 cut(s)	679
BspHI	TCATGA	1 cut(s)	705
BspLI	GGNNCC	2 cut(s)	30, 475
BspMI	ACCTGC	1 cut(s)	85
BspPI	GGATC	2 cut(s)	348, 407
BspT107I	GGYRCC	1 cut(s)	473
BspTI	CTTAAG	1 cut(s)	677
BsrDI	GCAATG	1 cut(s)	639
BsrFI	RCCGGY	1 cut(s)	682
BsrI	ACTGG	2 cut(s)	264, 388
BssAI	RCCGGY	1 cut(s)	682
BssECI	CCNNGG	1 cut(s)	141
BssMI	GATC	4 cut(s)	117, 340, 345, 412
BssNAI	GTATAC	1 cut(s)	465
BssNI	GRCGYC	1 cut(s)	474
Bst1107I	GTATAC	1 cut(s)	465
Bst2UI	CCWGG	3 cut(s)	82, 142, 417
Bst4CI	ACNGT	2 cut(s)	224, 608
BstACI	GRCGYC	1 cut(s)	474
BstAFI	CTTAAG	1 cut(s)	677
BstC8I	GCNNGC	2 cut(s)	305, 684
BstDEI	CTNAG	1 cut(s)	687
BstF5I	GGATG	2 cut(s)	30, 440
BstH2I	RGCGCY	2 cut(s)	138, 477
BstHHI	GCGC	2 cut(s)	137, 476
BstKTI	GATC	4 cut(s)	120, 343, 348, 415
BstMAI	GTCTC	1 cut(s)	463
BstMBI	GATC	4 cut(s)	117, 340, 345, 412
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 100, 169
BstNI	CCWGG	3 cut(s)	82, 142, 417
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	4 cut(s)	80, 85, 140, 415
BstV1I	GCAGC	1 cut(s)	172
BstX2I	RGATCY	1 cut(s)	412
BstYI	RGATCY	1 cut(s)	412
BstZ17I	GTATAC	1 cut(s)	465
BsuRI	GGCC	2 cut(s)	80, 85
BtsCI	GGATG	2 cut(s)	30, 440
BtsIMutI	CAGTG	2 cut(s)	229, 271
BveI	ACCTGC	1 cut(s)	85
Cac8I	GCNNGC	2 cut(s)	305, 684
CaiI	CAGNNNCTG	1 cut(s)	416
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	2 cut(s)	137, 476
Cfr10I	RCCGGY	1 cut(s)	682
Cfr13I	GGNCC	3 cut(s)	28, 70, 514
CspCI	CAANNNNNGTGG	2 cut(s)	589, 624
CviAII	CATG	5 cut(s)	212, 304, 308, 506, 706
DdeI	CTNAG	1 cut(s)	687
DinI	GGCGCC	1 cut(s)	475
DpnI	GATC	4 cut(s)	119, 342, 347, 414
DpnII	GATC	4 cut(s)	117, 340, 345, 412
DrdI	GACNNNNNNGTC	1 cut(s)	455
DseDI	GACNNNNNNGTC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	128
Eco47I	GGWCC	3 cut(s)	28, 70, 514
Eco57I	CTGAAG	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	173
EcoRI	GAATTC	1 cut(s)	491
EcoRII	CCWGG	3 cut(s)	80, 140, 415
EcoT22I	ATGCAT	2 cut(s)	305, 309
EgeI	GGCGCC	1 cut(s)	475
EheI	GGCGCC	1 cut(s)	475
FaeI	CATG	5 cut(s)	215, 307, 311, 509, 709
FatI	CATG	5 cut(s)	211, 303, 307, 505, 705
FblI	GTMKAC	1 cut(s)	464
Fnu4HI	GCNGC	2 cut(s)	59, 161
FokI	GGATG	2 cut(s)	37, 447
Fsp4HI	GCNGC	2 cut(s)	59, 161
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	2 cut(s)	136, 475
GluI	GCNGC	2 cut(s)	59, 161
HaeII	RGCGCY	2 cut(s)	138, 477
HaeIII	GGCC	2 cut(s)	80, 85
HapII	CCGG	2 cut(s)	86, 683
HhaI	GCGC	2 cut(s)	137, 476
Hin1I	GRCGYC	1 cut(s)	474
Hin1II	CATG	5 cut(s)	215, 307, 311, 509, 709
Hin6I	GCGC	2 cut(s)	135, 474
HinP1I	GCGC	2 cut(s)	135, 474
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HinfI	GANTC	1 cut(s)	673
HpaII	CCGG	2 cut(s)	86, 683
HphI	GGTGA	2 cut(s)	215, 623
Hpy166II	GTNNAC	2 cut(s)	465, 714
Hpy188I	TCNGA	6 cut(s)	74, 109, 345, 350, 366, 412
Hpy188III	TCNNGA	3 cut(s)	377, 670, 706
Hpy8I	GTNNAC	2 cut(s)	465, 714
Hpy99I	CGWCG	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	224, 608
HpyCH4V	TGCA	4 cut(s)	269, 303, 307, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 100, 169
HpyF3I	CTNAG	1 cut(s)	687
Hsp92I	GRCGYC	1 cut(s)	474
Hsp92II	CATG	5 cut(s)	215, 307, 311, 509, 709
HspAI	GCGC	2 cut(s)	135, 474
KasI	GGCGCC	1 cut(s)	473
KroI	GCCGGC	1 cut(s)	682
KroNI	GCCGGC	1 cut(s)	684
Kzo9I	GATC	4 cut(s)	117, 340, 345, 412
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	203, 224, 580
MalI	GATC	4 cut(s)	119, 342, 347, 414
MboI	GATC	4 cut(s)	117, 340, 345, 412
MboII	GAAGA	2 cut(s)	146, 557
MflI	RGATCY	1 cut(s)	412
MhlI	GDGCHC	3 cut(s)	42, 532, 665
MlsI	TGGCCA	1 cut(s)	80
MluCI	AATT	6 cut(s)	166, 195, 271, 294, 491, 585
MluNI	TGGCCA	1 cut(s)	80
Mly113I	GGCGCC	1 cut(s)	474
MmeI	TCCRAC	1 cut(s)	389
MnlI	CCTC	5 cut(s)	14, 61, 103, 270, 446
Mox20I	TGGCCA	1 cut(s)	80
Mph1103I	ATGCAT	2 cut(s)	305, 309
MroNI	GCCGGC	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	150
MscI	TGGCCA	1 cut(s)	80
MseI	TTAA	6 cut(s)	233, 356, 429, 497, 656, 678
Msp20I	TGGCCA	1 cut(s)	80
MspCI	CTTAAG	1 cut(s)	677
MspI	CCGG	2 cut(s)	86, 683
MspR9I	CCNGG	4 cut(s)	82, 87, 142, 417
MvaI	CCWGG	3 cut(s)	82, 142, 417
MwoI	GCNNNNNNNGC	3 cut(s)	91, 100, 169
NaeI	GCCGGC	1 cut(s)	684
NarI	GGCGCC	1 cut(s)	474
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	4 cut(s)	117, 340, 345, 412
NgoMIV	GCCGGC	1 cut(s)	682
NlaIII	CATG	5 cut(s)	215, 307, 311, 509, 709
NlaIV	GGNNCC	2 cut(s)	30, 475
NmuCI	GTSAC	2 cut(s)	203, 224
NsiI	ATGCAT	2 cut(s)	305, 309
NspI	RCATGY	1 cut(s)	307
PaeI	GCATGC	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	173
PagI	TCATGA	1 cut(s)	705
PdiI	GCCGGC	1 cut(s)	684
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	673
PkrI	GCNGC	2 cut(s)	60, 162
PluTI	GGCGCC	1 cut(s)	477
Psp6I	CCWGG	3 cut(s)	80, 140, 415
PspGI	CCWGG	3 cut(s)	80, 140, 415
PspN4I	GGNNCC	2 cut(s)	30, 475
PspPI	GGNCC	3 cut(s)	28, 70, 514
PspXI	VCTCGAGB	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	416
PsuI	RGATCY	1 cut(s)	412
SaqAI	TTAA	6 cut(s)	233, 356, 429, 497, 656, 678
SatI	GCNGC	2 cut(s)	59, 161
Sau3AI	GATC	4 cut(s)	117, 340, 345, 412
Sau96I	GGNCC	3 cut(s)	28, 70, 514
ScrFI	CCNGG	4 cut(s)	82, 87, 142, 417
SduI	GDGCHC	3 cut(s)	42, 532, 665
SfaNI	GCATC	1 cut(s)	14
SfoI	GGCGCC	1 cut(s)	475
Sfr274I	CTCGAG	1 cut(s)	173
SinI	GGWCC	3 cut(s)	28, 70, 514
SlaI	CTCGAG	1 cut(s)	173
SmlI	CTYRAG	2 cut(s)	173, 677
SmoI	CTYRAG	2 cut(s)	173, 677
SphI	GCATGC	1 cut(s)	307
Sse9I	AATT	6 cut(s)	166, 195, 271, 294, 491, 585
SsiI	CCGC	4 cut(s)	58, 113, 201, 566
SspDI	GGCGCC	1 cut(s)	473
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	4 cut(s)	80, 85, 140, 415
TaaI	ACNGT	2 cut(s)	224, 608
TaqI	TCGA	2 cut(s)	42, 174
TasI	AATT	6 cut(s)	166, 195, 271, 294, 491, 585
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	673
Tru1I	TTAA	6 cut(s)	233, 356, 429, 497, 656, 678
Tru9I	TTAA	6 cut(s)	233, 356, 429, 497, 656, 678
TscAI	CASTG	2 cut(s)	229, 271
TseFI	GTSAC	2 cut(s)	203, 224
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	2 cut(s)	203, 224
TspDTI	ATGAA	4 cut(s)	200, 458, 663, 694
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	229, 271
Vha464I	CTTAAG	1 cut(s)	677
VpaK11BI	GGWCC	3 cut(s)	28, 70, 514
XapI	RAATTY	3 cut(s)	195, 294, 491
XceI	RCATGY	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	464
XmnI	GAANNNNTTC	1 cut(s)	150
XspI	CTAG	1 cut(s)	284
Zsp2I	ATGCAT	2 cut(s)	305, 309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.