Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011808

Physical Location & Seq

Genomic Coordinates Forward (+)

16643381 .. 16645866

Gene Structure 2486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G39870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGTCTCGCCTCCTCCCTCCTCATCTCTCCGTCAACCTTCCTACCATGGAGAAAACTACTTCTTCCGAGTTAACCCCAACTCGACTCGGTTTTCCTAACGAGTTCCCTTACGAGTTCGACTCTCCTTCCTTCTCCCCTGGTTTCACTTCTCCCGGTGACTCCACTGAGACGGAAGACGAAAGCAGTGATGACGAGGAAGACTTCCTCGCTGGGTTAACTCGCCGACTCGCTCCTTCGACTCAGCGTCTTCCTTCCCCTCTCTTCAAGTCTGAGGAGAAACGTCAAGTTGCAGCTACTTCACCACAGTCAACACTGAGTGGACTCGGAAGCTTTTCAAACTCAGGAAGTAGAAGCCCTATCCTTCCATCTCCACCGGCTCCTACGTCATCATTTCGTAGAGACAACGCGTGGGATGTGATTTCTGCGGCTGCTGGAGAAGTCGCTAGACTTAAGCTCGGAAGCTACGAGCCTCATCACCTTCCCCTTCAAACCCCTGAGTCTCTTCTCCGCCGTCAAAACGCTGCCATACATGCTGAACTCCAACACCAGCGTCTCATCGAACAGATGTGGCTCTGCTCTGCTCAGTCAAGATTCAAGCTCTCAGAGAATCGTATCCCAAGGAGAGTAGTTAATGAAGAAGGCTTATTTGAGAATCCGAGATACGTGAGACGCAACAATCCTACGTGGTTGCCTCCGCAACAAGCCGCAGCTCCTTTGAAACGTCCTTCTGCTGGAACCGGTGTTTTTCTTCCCCGGCGATACCCATCGGCCGCCCCTTCCGATTCCCTGAAAACACCAGTCAACACTCCAGCTATGTTGCAGCCTAAAGTGAAACCTCAAAATCTCAACTTTGATGAGTTCACCAATATTGTTGGGCCAAGGCGTAGCCAATTCGATTACGAGTGCATGTTGGCGAGAAGTACAGTACTTGCTCGTCAGGGAAATTTCAGAGCAGTTAGTGGTGGTGGTCTTCCACAGGATTGGATGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.7

Weight (kDa)

8.9

Isoelectric Point (pI)

84.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39870
fragaria_vesca	FvH4_7g23630 FvH4_7g23630
malus_domestica	MD01G1142200.v1.1 MD07G1207900.v1.1
prunus_persica	Prupe.2G243200_v2.0.a1 Prupe.4G251600_v2.0.a1
pyrus_communis	pycom01g16240 pycom07g19360
rosa_chinensis	RchiOBHm_Chr1g0368901
rosa_laevigata	RLG00000027178
rosa_multiflora	Rmu_sc0004250.1_g000045 Rmu_sc0030064.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288220
rosa_rugosa	Rorug01G0345700
rosa_samantha	Rh1AG352700 Rh1BG316200 Rh1CG330900 Rh1DG347700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	407
AciI	CCGC	5 cut(s)	425, 508, 695, 705, 771
AcoI	YGGCCR	1 cut(s)	768
AcsI	RAATTY	1 cut(s)	943
AdeI	CACNNNGTG	1 cut(s)	317
AfaI	GTAC	3 cut(s)	922, 927, 989
AfiI	CCNNNNNNNGG	1 cut(s)	731
AflII	CTTAAG	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	405
AgeI	ACCGGT	1 cut(s)	737
AgsI	TTSAA	5 cut(s)	265, 336, 488, 595, 718
AhdI	GACNNNNNGTC	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	136
AluBI	AGCT	7 cut(s)	293, 330, 454, 462, 598, 710, 812
AluI	AGCT	7 cut(s)	293, 330, 454, 462, 598, 710, 812
Alw26I	GTCTC	6 cut(s)	9, 161, 393, 504, 557, 661
AoxI	GGCC	2 cut(s)	768, 875
ApeKI	GCWGC	5 cut(s)	290, 428, 521, 707, 820
ApoI	RAATTY	1 cut(s)	943
AsiGI	ACCGGT	1 cut(s)	737
Asp700I	GAANNNNTTC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	875
AsuC2I	CCSGG	2 cut(s)	153, 754
AsuHPI	GGTGA	4 cut(s)	167, 291, 467, 853
BbsI	GAAGAC	4 cut(s)	180, 204, 239, 962
BbvI	GCAGC	5 cut(s)	302, 415, 508, 719, 832
BccI	CCATC	2 cut(s)	373, 772
BceAI	ACGGC	1 cut(s)	495
BciT130I	CCWGG	1 cut(s)	138
BciVI	GTATCC	1 cut(s)	623
BcnI	CCSGG	2 cut(s)	153, 754
BcoDI	GTCTC	6 cut(s)	9, 161, 393, 504, 557, 661
BfaI	CTAG	1 cut(s)	444
BfrI	CTTAAG	1 cut(s)	449
BfuI	GTATCC	1 cut(s)	623
BisI	GCNGC	8 cut(s)	291, 426, 429, 522, 705, 708, 771, 821
BlsI	GCNGC	8 cut(s)	292, 427, 430, 523, 706, 709, 772, 822
BmcAI	AGTACT	1 cut(s)	927
Bme1390I	CCNGG	3 cut(s)	138, 153, 754
BmeRI	GACNNNNNGTC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	875
BmiI	GGNNCC	2 cut(s)	378, 736
BmrFI	CCNGG	3 cut(s)	138, 153, 754
BpiI	GAAGAC	4 cut(s)	180, 204, 239, 962
BplI	GAGNNNNNCTC	2 cut(s)	104, 136
BpmI	CTGGAG	2 cut(s)	453, 792
BpuMI	CCSGG	2 cut(s)	153, 754
BsaAI	YACGTR	2 cut(s)	664, 684
BsaBI	GATNNNNATC	1 cut(s)	763
BsaJI	CCNNGG	5 cut(s)	45, 136, 617, 752, 878
BsaWI	WCCGGW	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	1 cut(s)	731
Bse118I	RCCGGY	2 cut(s)	373, 737
Bse1I	ACTGG	1 cut(s)	797
Bse8I	GATNNNNATC	1 cut(s)	763
BseBI	CCWGG	1 cut(s)	138
BseDI	CCNNGG	5 cut(s)	45, 136, 617, 752, 878
BseGI	GGATG	2 cut(s)	418, 990
BseJI	GATNNNNATC	1 cut(s)	763
BseLI	CCNNNNNNNGG	1 cut(s)	731
BseMII	CTCAG	8 cut(s)	156, 254, 261, 305, 354, 486, 596, 615
BseNI	ACTGG	1 cut(s)	797
BseRI	GAGGAG	2 cut(s)	9, 287
BseX3I	CGGCCG	1 cut(s)	768
BseXI	GCAGC	5 cut(s)	302, 415, 508, 719, 832
BseYI	CCCAGC	1 cut(s)	209
Bsh1236I	CGCG	1 cut(s)	407
Bsh1285I	CGRYCG	1 cut(s)	771
BshFI	GGCC	2 cut(s)	770, 877
BshTI	ACCGGT	1 cut(s)	737
BsiEI	CGRYCG	1 cut(s)	771
BsiSI	CCGG	4 cut(s)	153, 374, 738, 754
BslI	CCNNNNNNNGG	1 cut(s)	731
BsmAI	GTCTC	6 cut(s)	9, 161, 393, 504, 557, 661
BsmBI	CGTCTC	3 cut(s)	161, 557, 661
BsnI	GGCC	2 cut(s)	770, 877
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	5 cut(s)	425, 508, 695, 705, 771
BspANI	GGCC	2 cut(s)	770, 877
BspCNI	CTCAG	8 cut(s)	157, 253, 262, 306, 353, 487, 595, 614
BspFNI	CGCG	1 cut(s)	407
BspLI	GGNNCC	2 cut(s)	378, 736
BspTI	CTTAAG	1 cut(s)	449
BsrFI	RCCGGY	2 cut(s)	373, 737
BsrI	ACTGG	1 cut(s)	797
BssAI	RCCGGY	2 cut(s)	373, 737
BssECI	CCNNGG	5 cut(s)	45, 136, 617, 752, 878
BssT1I	CCWWGG	3 cut(s)	45, 617, 878
Bst2UI	CCWGG	1 cut(s)	138
Bst4CI	ACNGT	2 cut(s)	306, 925
Bst6I	CTCTTC	2 cut(s)	266, 507
BstAFI	CTTAAG	1 cut(s)	449
BstBAI	YACGTR	2 cut(s)	664, 684
BstDEI	CTNAG	8 cut(s)	165, 240, 270, 314, 340, 495, 582, 601
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	418, 990
BstFNI	CGCG	1 cut(s)	407
BstMAI	GTCTC	6 cut(s)	9, 161, 393, 504, 557, 661
BstMCI	CGRYCG	1 cut(s)	771
BstMWI	GCNNNNNNNGC	1 cut(s)	530
BstNI	CCWGG	1 cut(s)	138
BstNSI	RCATGY	2 cut(s)	533, 910
BstSCI	CCNGG	3 cut(s)	136, 151, 752
BstUI	CGCG	1 cut(s)	407
BstV1I	GCAGC	5 cut(s)	302, 415, 508, 719, 832
BstV2I	GAAGAC	4 cut(s)	180, 204, 239, 962
BstXI	CCANNNNNNTGG	1 cut(s)	981
BstZI	CGGCCG	1 cut(s)	768
BsuI	GTATCC	1 cut(s)	623
BsuRI	GGCC	2 cut(s)	770, 877
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	418, 990
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	3 cut(s)	162, 190, 311
Cfr10I	RCCGGY	2 cut(s)	373, 737
Cfr13I	GGNCC	1 cut(s)	875
CseI	GACGC	3 cut(s)	233, 539, 678
Csp6I	GTAC	3 cut(s)	921, 926, 988
CspAI	ACCGGT	1 cut(s)	737
CviAII	CATG	3 cut(s)	46, 530, 907
CviQI	GTAC	3 cut(s)	921, 926, 988
DdeI	CTNAG	8 cut(s)	165, 240, 270, 314, 340, 495, 582, 601
DraIII	CACNNNGTG	1 cut(s)	317
DriI	GACNNNNNGTC	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	768
EagI	CGGCCG	1 cut(s)	768
Eam1104I	CTCTTC	2 cut(s)	266, 507
Eam1105I	GACNNNNNGTC	1 cut(s)	243
EarI	CTCTTC	2 cut(s)	266, 507
EciI	GGCGGA	1 cut(s)	497
EclXI	CGGCCG	1 cut(s)	768
Eco130I	CCWWGG	3 cut(s)	45, 617, 878
Eco52I	CGGCCG	1 cut(s)	768
EcoRII	CCWGG	1 cut(s)	136
EcoT14I	CCWWGG	3 cut(s)	45, 617, 878
ErhI	CCWWGG	3 cut(s)	45, 617, 878
Esp3I	CGTCTC	3 cut(s)	161, 557, 661
FaeI	CATG	3 cut(s)	49, 533, 910
FaiI	YATR	5 cut(s)	47, 527, 531, 815, 908
FatI	CATG	3 cut(s)	45, 529, 906
Fnu4HI	GCNGC	8 cut(s)	291, 426, 429, 522, 705, 708, 771, 821
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	8 cut(s)	291, 426, 429, 522, 705, 708, 771, 821
FspBI	CTAG	1 cut(s)	444
GluI	GCNGC	8 cut(s)	291, 426, 429, 522, 705, 708, 771, 821
GsaI	CCCAGC	1 cut(s)	213
GsuI	CTGGAG	2 cut(s)	453, 792
HaeIII	GGCC	2 cut(s)	770, 877
HapII	CCGG	4 cut(s)	153, 374, 738, 754
HgaI	GACGC	3 cut(s)	233, 539, 678
Hin1II	CATG	3 cut(s)	49, 533, 910
HincII	GTYRAC	5 cut(s)	34, 72, 216, 309, 802
HindII	GTYRAC	5 cut(s)	34, 72, 216, 309, 802
HindIII	AAGCTT	1 cut(s)	328
HpaI	GTTAAC	2 cut(s)	72, 216
HpaII	CCGG	4 cut(s)	153, 374, 738, 754
HphI	GGTGA	4 cut(s)	167, 291, 467, 853
Hpy166II	GTNNAC	7 cut(s)	34, 72, 216, 309, 320, 802, 861
Hpy188I	TCNGA	8 cut(s)	67, 271, 326, 458, 604, 657, 781, 950
Hpy188III	TCNNGA	2 cut(s)	342, 588
Hpy8I	GTNNAC	7 cut(s)	34, 72, 216, 309, 320, 802, 861
HpyCH4III	ACNGT	2 cut(s)	306, 925
HpyCH4IV	ACGT	5 cut(s)	280, 383, 663, 683, 721
HpyCH4V	TGCA	3 cut(s)	290, 820, 906
HpyF10VI	GCNNNNNNNGC	1 cut(s)	530
HpyF3I	CTNAG	8 cut(s)	165, 240, 270, 314, 340, 495, 582, 601
HpySE526I	ACGT	5 cut(s)	280, 383, 663, 683, 721
Hsp92II	CATG	3 cut(s)	49, 533, 910
KspAI	GTTAAC	2 cut(s)	72, 216
LmnI	GCTCC	3 cut(s)	235, 382, 715
Lsp1109I	GCAGC	5 cut(s)	302, 415, 508, 719, 832
MaeI	CTAG	1 cut(s)	444
MaeII	ACGT	5 cut(s)	280, 383, 663, 683, 721
MaeIII	GTNAC	1 cut(s)	155
MboII	GAAGA	9 cut(s)	54, 185, 209, 239, 253, 494, 647, 740, 962
MluCI	AATT	2 cut(s)	890, 943
MluI	ACGCGT	1 cut(s)	405
MlyI	GAGTC	7 cut(s)	78, 113, 152, 219, 232, 315, 506
MmeI	TCCRAC	1 cut(s)	565
MroXI	GAANNNNTTC	1 cut(s)	331
MseI	TTAA	4 cut(s)	71, 215, 450, 630
MspCI	CTTAAG	1 cut(s)	449
MspI	CCGG	4 cut(s)	153, 374, 738, 754
MspR9I	CCNGG	3 cut(s)	138, 153, 754
MvaI	CCWGG	1 cut(s)	138
MvnI	CGCG	1 cut(s)	407
MwoI	GCNNNNNNNGC	1 cut(s)	530
NciI	CCSGG	2 cut(s)	153, 754
NcoI	CCATGG	1 cut(s)	45
NlaIII	CATG	3 cut(s)	49, 533, 910
NlaIV	GGNNCC	2 cut(s)	378, 736
NmuCI	GTSAC	1 cut(s)	155
NspI	RCATGY	2 cut(s)	533, 910
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	331
PfeI	GAWTC	4 cut(s)	591, 607, 652, 782
PinAI	ACCGGT	1 cut(s)	737
PkrI	GCNGC	8 cut(s)	292, 427, 430, 523, 706, 709, 772, 822
PleI	GAGTC	7 cut(s)	78, 113, 152, 219, 232, 315, 505
PpsI	GAGTC	7 cut(s)	78, 113, 152, 219, 232, 315, 505
Ppu21I	YACGTR	2 cut(s)	664, 684
Psp6I	CCWGG	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	378, 736
PspPI	GGNCC	1 cut(s)	875
RsaI	GTAC	3 cut(s)	922, 927, 989
RsaNI	GTAC	3 cut(s)	921, 926, 988
SaqAI	TTAA	4 cut(s)	71, 215, 450, 630
SatI	GCNGC	8 cut(s)	291, 426, 429, 522, 705, 708, 771, 821
Sau96I	GGNCC	1 cut(s)	875
ScaI	AGTACT	1 cut(s)	927
SchI	GAGTC	7 cut(s)	78, 113, 152, 219, 232, 315, 506
ScrFI	CCNGG	3 cut(s)	138, 153, 754
SmlI	CTYRAG	1 cut(s)	449
SmoI	CTYRAG	1 cut(s)	449
Sse9I	AATT	2 cut(s)	890, 943
SsiI	CCGC	5 cut(s)	425, 508, 695, 705, 771
SspI	AATATT	1 cut(s)	868
SspMI	CTAG	1 cut(s)	444
StyD4I	CCNGG	3 cut(s)	136, 151, 752
StyI	CCWWGG	3 cut(s)	45, 617, 878
TaaI	ACNGT	2 cut(s)	306, 925
TaiI	ACGT	5 cut(s)	283, 386, 666, 686, 724
TaqI	TCGA	5 cut(s)	82, 117, 236, 558, 894
TasI	AATT	2 cut(s)	890, 943
TatI	WGTACW	3 cut(s)	920, 925, 987
TauI	GCSGC	3 cut(s)	428, 707, 773
TfiI	GAWTC	4 cut(s)	591, 607, 652, 782
Tru1I	TTAA	4 cut(s)	71, 215, 450, 630
Tru9I	TTAA	4 cut(s)	71, 215, 450, 630
TscAI	CASTG	3 cut(s)	169, 190, 318
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	5 cut(s)	290, 428, 521, 707, 820
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	648
TspGWI	ACGGA	2 cut(s)	19, 185
TspRI	CASTG	3 cut(s)	169, 190, 318
Vha464I	CTTAAG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	943
XceI	RCATGY	2 cut(s)	533, 910
XmnI	GAANNNNTTC	1 cut(s)	331
XspI	CTAG	1 cut(s)	444
ZrmI	AGTACT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.