Rh1AG352700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Forward (+)
58855124 .. 58857325
2202 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG352700.1

Sequence Viewer

Length: 1239 bp
ATGGCTAAGTCACCGGAAGATCCCAGCTTCTGGCTCCCCTCTGATTTCCTTGCCAACGACGACGTTCACCTCATGGACAACAAAGGGCTCAGCTTCCGCAGAGCCGCCGCTGTCTCCTTCCCCACCGAGTTTCCGTACGAGTTCGACTCGTCCGGTTCCAACTCGGCCCTGAGCTCGCCGGTGGAGTCCGATGTGGGCTCCACCGAGACGGAGAGCAGCGACGAGGAGGACTTTCTCGCCGGGTTAACTCGCCGCCTGGCTCAGTCCTCGCTCAGCCAGACTCAGAAGCTCTCCGTCCCCAGCTTCGCTAATGAAAAGCAGCCCGAGTGGGTCATGTCCGGGTCACCTCAGTCGACTCTGAGCGGAATCGGGAGCTGGTCTAGCAACGGAAGCCCGGCGGGTCCTTCTTCCCAGGTGCCGTCTCCTCCAACGACGCCGTTTGGGGGTCAAAACGACACGTGGGATCTGATTTACGCCGCCGCCGGACAAGTGGCGAGGTTGAAGATGAACAGTGTTGAAGGAGCAGCCAAGTTCAGTAACAACAGCAGCAACGGCAGAGGGCTTCTGGGCCCACCTCGGAGCCCAAGTCCGTCTCTTCCTTGCGTCCAAAACCAAAGCCCCTTCACCCAGTTTCAGCAAGGGAGACAAGACCAAGTACTACAGTCACAGTGCTCTGCTGCTTCATGGGGAAAACCAGTGAAGCTGAACTGGTCAGCTCAGCAACAACAGCAGCAGCAACAGATCCAAAACAGAGGAAGAAATATCGGTCTGTATGAAAGTGGAAGATGTGCGCATGGTGTGAGTTTGCCCCAATCTCAAAATGCATGGCCTCCTCTTCAAGCTCAACACCAAAACCAACAACACCCACATCGCAATACCCGACCCGTTTTGCCTAATGGGTCTAATGTCAAGAGGGAGTCTACCGGCACCGGCGTCTTCTTGCCTCGCAGATACTCCAACCCCAATCCGACTCCTGAGCCACCTCGCAAAAGAGCAGGTTGCCCTACTGTTTTGCTCCCAGCCAAGGTGGTTCAAGCTCTGAACTTGAGCTTTGAGGACATGAATGGTCATCATCAGCAACACCATCTTCAGCCACGGTTCAACAACACTGCTTTGGCTCCAAACCATGAGGCTCTGGTGGCAAGAAGAAACGCGCTATTGACTCAGCAAAGAAGGGGTTTAAGGCAAGATGGGCCACTAAACTATGAAGTGCGCTTGCCTCAGGAATGGACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

412

Amino Acids

45.17

Weight (kDa)

8.9

Isoelectric Point (pI)

68.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 792
Acc36I ACCTGC 1 cut(s) 986
AccB1I GGYRCC 2 cut(s) 415, 926
AccB7I CCANNNNNTGG 1 cut(s) 30
AccBSI CCGCTC 1 cut(s) 363
AccI GTMKAC 2 cut(s) 353, 920
AccII CGCG 1 cut(s) 1154
AciI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
AclWI GGATC 3 cut(s) 14, 471, 736
AcuI CTGAAG 1 cut(s) 1073
AcvI CACGTG 1 cut(s) 459
AcyI GRCGYC 2 cut(s) 434, 933
AfaI GTAC 2 cut(s) 137, 657
AfiI CCNNNNNNNGG 3 cut(s) 30, 443, 1024
AflIII ACRYGT 1 cut(s) 456
AgsI TTSAA 5 cut(s) 502, 518, 839, 1034, 1102
AjnI CCWGG 2 cut(s) 255, 411
Alw21I GWGCWC 2 cut(s) 176, 674
Alw26I GTCTC 5 cut(s) 118, 200, 426, 597, 637
AlwI GGATC 3 cut(s) 14, 471, 736
AlwNI CAGNNNCTG 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 4 cut(s) 165, 568, 827, 1193
ApaI GGGCCC 1 cut(s) 572
ApeKI GCWGC 7 cut(s) 216, 319, 524, 546, 677, 730, 733
AspLEI GCGC 3 cut(s) 793, 1156, 1215
AspS9I GGNCC 6 cut(s) 166, 401, 568, 569, 1193, 1230
AsuC2I CCSGG 3 cut(s) 241, 340, 395
AsuHPI GGTGA 4 cut(s) 3, 59, 336, 616
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 2 cut(s) 401, 1230
AxyI CCTNAGG 1 cut(s) 1221
BaeGI GKGCMC 1 cut(s) 572
BanI GGYRCC 2 cut(s) 415, 926
BanII GRGCYC 5 cut(s) 90, 176, 200, 572, 584
BbrPI CACGTG 1 cut(s) 459
BbsI GAAGAC 1 cut(s) 928
Bbv12I GWGCWC 2 cut(s) 176, 674
BbvI GCAGC 7 cut(s) 228, 331, 536, 558, 664, 742, 745
BccI CCATC 2 cut(s) 1092, 1184
BceAI ACGGC 3 cut(s) 403, 421, 568
BciT130I CCWGG 2 cut(s) 257, 413
BcnI CCSGG 3 cut(s) 241, 340, 395
BcoDI GTCTC 5 cut(s) 118, 200, 426, 597, 637
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 659
BfuAI ACCTGC 1 cut(s) 986
BlpI GCTNAGC 3 cut(s) 89, 272, 717
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 5 cut(s) 241, 257, 340, 395, 413
Bme18I GGWCC 2 cut(s) 401, 1230
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 6 cut(s) 166, 401, 568, 569, 1193, 1230
BmiI GGNNCC 9 cut(s) 35, 157, 199, 402, 417, 570, 581, 928, 1119
BmrFI CCNGG 5 cut(s) 241, 257, 340, 395, 413
BmrI ACTGGG 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 928
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bpu10I CCTNAGC 2 cut(s) 170, 975
Bpu1102I GCTNAGC 3 cut(s) 89, 272, 717
BpuEI CTTGAG 1 cut(s) 1066
BpuMI CCSGG 3 cut(s) 241, 340, 395
BsaAI YACGTR 1 cut(s) 459
BsaHI GRCGYC 2 cut(s) 434, 933
BsaJI CCNNGG 4 cut(s) 411, 575, 1023, 1094
BsaWI WCCGGW 2 cut(s) 13, 152
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 443, 1024
Bse118I RCCGGY 3 cut(s) 178, 923, 929
Bse1I ACTGG 3 cut(s) 628, 695, 713
Bse21I CCTNAGG 1 cut(s) 1221
BseBI CCWGG 2 cut(s) 257, 413
BseDI CCNNGG 4 cut(s) 411, 575, 1023, 1094
BseLI CCNNNNNNNGG 3 cut(s) 30, 443, 1024
BseNI ACTGG 3 cut(s) 628, 695, 713
BseRI GAGGAG 3 cut(s) 239, 414, 822
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 7 cut(s) 228, 331, 536, 558, 664, 742, 745
BseYI CCCAGC 3 cut(s) 23, 299, 1018
Bsh1236I CGCG 1 cut(s) 1154
BshFI GGCC 4 cut(s) 167, 570, 829, 1195
BshNI GGYRCC 2 cut(s) 415, 926
BsiHKAI GWGCWC 2 cut(s) 176, 674
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
BsiWI CGTACG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 30, 443, 1024
BsmAI GTCTC 5 cut(s) 118, 200, 426, 597, 637
BsmBI CGTCTC 3 cut(s) 200, 426, 597
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 4 cut(s) 167, 570, 829, 1195
BsoBI CYCGRG 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 568
Bsp1286I GDGCHC 6 cut(s) 90, 176, 200, 572, 584, 674
Bsp143I GATC 3 cut(s) 19, 463, 741
Bsp1720I GCTNAGC 3 cut(s) 89, 272, 717
BspACI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
BspANI GGCC 4 cut(s) 167, 570, 829, 1195
BspFNI CGCG 1 cut(s) 1154
BspLI GGNNCC 9 cut(s) 35, 157, 199, 402, 417, 570, 581, 928, 1119
BspMI ACCTGC 1 cut(s) 986
BspPI GGATC 3 cut(s) 14, 471, 736
BspT107I GGYRCC 2 cut(s) 415, 926
BsrBI CCGCTC 1 cut(s) 363
BsrFI RCCGGY 3 cut(s) 178, 923, 929
BsrI ACTGG 3 cut(s) 628, 695, 713
BssAI RCCGGY 3 cut(s) 178, 923, 929
BssECI CCNNGG 4 cut(s) 411, 575, 1023, 1094
BssMI GATC 3 cut(s) 19, 463, 741
BssNI GRCGYC 2 cut(s) 434, 933
BssT1I CCWWGG 1 cut(s) 1023
Bst2UI CCWGG 2 cut(s) 257, 413
Bst4CI ACNGT 5 cut(s) 512, 663, 669, 1009, 1098
Bst6I CTCTTC 2 cut(s) 600, 840
BstACI GRCGYC 2 cut(s) 434, 933
BstBAI YACGTR 1 cut(s) 459
BstC8I GCNNGC 2 cut(s) 176, 1217
BstDSI CCRYGG 1 cut(s) 1094
BstEII GGTNACC 1 cut(s) 342
BstFNI CGCG 1 cut(s) 1154
BstHHI GCGC 3 cut(s) 793, 1156, 1215
BstKTI GATC 3 cut(s) 22, 466, 744
BstMAI GTCTC 5 cut(s) 118, 200, 426, 597, 637
BstMBI GATC 3 cut(s) 19, 463, 741
BstMWI GCNNNNNNNGC 6 cut(s) 381, 390, 552, 727, 1139, 1192
BstNI CCWGG 2 cut(s) 257, 413
BstPI GGTNACC 1 cut(s) 342
BstSCI CCNGG 5 cut(s) 239, 255, 338, 393, 411
BstSFI CTRYAG 1 cut(s) 659
BstSLI GKGCMC 1 cut(s) 572
BstUI CGCG 1 cut(s) 1154
BstV1I GCAGC 7 cut(s) 228, 331, 536, 558, 664, 742, 745
BstV2I GAAGAC 1 cut(s) 928
BstX2I RGATCY 3 cut(s) 19, 463, 741
BstYI RGATCY 3 cut(s) 19, 463, 741
Bsu36I CCTNAGG 1 cut(s) 1221
BsuRI GGCC 4 cut(s) 167, 570, 829, 1195
BtgI CCRYGG 1 cut(s) 1094
BtgZI GCGATG 1 cut(s) 854
BtsI GCAGTG 1 cut(s) 1107
BtsIMutI CAGTG 4 cut(s) 517, 674, 702, 1107
BveI ACCTGC 1 cut(s) 986
Cac8I GCNNGC 2 cut(s) 176, 1217
CaiI CAGNNNCTG 1 cut(s) 30
CfoI GCGC 3 cut(s) 793, 1156, 1215
Cfr10I RCCGGY 3 cut(s) 178, 923, 929
Cfr13I GGNCC 6 cut(s) 166, 401, 568, 569, 1193, 1230
CseI GACGC 3 cut(s) 442, 592, 922
Csp6I GTAC 2 cut(s) 136, 656
CviAII CATG 7 cut(s) 73, 334, 684, 794, 825, 1060, 1127
CviQI GTAC 2 cut(s) 136, 656
DpnI GATC 3 cut(s) 21, 465, 743
DpnII GATC 3 cut(s) 19, 463, 741
Eam1104I CTCTTC 2 cut(s) 600, 840
EarI CTCTTC 2 cut(s) 600, 840
Ecl136II GAGCTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 1023
Eco24I GRGCYC 5 cut(s) 90, 176, 200, 572, 584
Eco47I GGWCC 2 cut(s) 401, 1230
Eco53kI GAGCTC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 1073
Eco72I CACGTG 1 cut(s) 459
Eco81I CCTNAGG 1 cut(s) 1221
Eco88I CYCGRG 1 cut(s) 323
Eco91I GGTNACC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 401
EcoO65I GGTNACC 1 cut(s) 342
EcoRII CCWGG 2 cut(s) 255, 411
EcoT14I CCWWGG 1 cut(s) 1023
EcoT22I ATGCAT 1 cut(s) 826
EcoT38I GRGCYC 5 cut(s) 90, 176, 200, 572, 584
ErhI CCWWGG 1 cut(s) 1023
Esp3I CGTCTC 3 cut(s) 200, 426, 597
FaeI CATG 7 cut(s) 76, 337, 687, 797, 828, 1063, 1130
FaiI YATR 9 cut(s) 74, 335, 685, 774, 795, 826, 1061, 1128, 1206
FaqI GGGAC 1 cut(s) 281
FatI CATG 7 cut(s) 72, 333, 683, 793, 824, 1059, 1126
FauI CCCGC 1 cut(s) 391
FblI GTMKAC 2 cut(s) 353, 920
FriOI GRGCYC 5 cut(s) 90, 176, 200, 572, 584
FspAI RTGCGCAY 1 cut(s) 792
FspBI CTAG 1 cut(s) 381
FspI TGCGCA 1 cut(s) 792
GlaI GCGC 3 cut(s) 792, 1155, 1214
GsaI CCCAGC 3 cut(s) 27, 303, 1022
HaeIII GGCC 4 cut(s) 167, 570, 829, 1195
HapII CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
HgaI GACGC 3 cut(s) 442, 592, 922
HhaI GCGC 3 cut(s) 793, 1156, 1215
Hin1I GRCGYC 2 cut(s) 434, 933
Hin1II CATG 7 cut(s) 76, 337, 687, 797, 828, 1063, 1130
Hin6I GCGC 3 cut(s) 791, 1154, 1213
HinP1I GCGC 3 cut(s) 791, 1154, 1213
HincII GTYRAC 2 cut(s) 246, 354
HindII GTYRAC 2 cut(s) 246, 354
HinfI GANTC 8 cut(s) 146, 185, 280, 355, 366, 917, 970, 1162
HpaI GTTAAC 1 cut(s) 246
HpaII CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
HphI GGTGA 4 cut(s) 3, 59, 336, 616
Hpy166II GTNNAC 4 cut(s) 67, 246, 354, 921
Hpy188I TCNGA 8 cut(s) 43, 190, 285, 360, 468, 579, 969, 1041
Hpy188III TCNNGA 4 cut(s) 370, 910, 974, 1223
Hpy8I GTNNAC 4 cut(s) 67, 246, 354, 921
Hpy99I CGWCG 4 cut(s) 62, 65, 224, 436
HpyAV CCTTC 5 cut(s) 127, 414, 512, 631, 1167
HpyCH4III ACNGT 5 cut(s) 512, 663, 669, 1009, 1098
HpyCH4IV ACGT 2 cut(s) 63, 458
HpyCH4V TGCA 1 cut(s) 824
HpyF10VI GCNNNNNNNGC 6 cut(s) 381, 390, 552, 727, 1139, 1192
HpySE526I ACGT 2 cut(s) 63, 458
Hsp92I GRCGYC 2 cut(s) 434, 933
Hsp92II CATG 7 cut(s) 76, 337, 687, 797, 828, 1063, 1130
HspAI GCGC 3 cut(s) 791, 1154, 1213
KspAI GTTAAC 1 cut(s) 246
Kzo9I GATC 3 cut(s) 19, 463, 741
LmnI GCTCC 7 cut(s) 39, 203, 372, 521, 579, 1020, 1123
Lsp1109I GCAGC 7 cut(s) 228, 331, 536, 558, 664, 742, 745
MaeI CTAG 1 cut(s) 381
MaeII ACGT 2 cut(s) 63, 458
MaeIII GTNAC 4 cut(s) 9, 342, 536, 663
MalI GATC 3 cut(s) 21, 465, 743
MbiI CCGCTC 1 cut(s) 363
MboI GATC 3 cut(s) 19, 463, 741
MflI RGATCY 3 cut(s) 19, 463, 741
MhlI GDGCHC 6 cut(s) 90, 176, 200, 572, 584, 674
MlyI GAGTC 7 cut(s) 140, 194, 274, 349, 926, 964, 1156
MmeI TCCRAC 4 cut(s) 183, 452, 981, 992
Mph1103I ATGCAT 1 cut(s) 826
MseI TTAA 2 cut(s) 245, 1181
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
MspR9I CCNGG 5 cut(s) 241, 257, 340, 395, 413
MvaI CCWGG 2 cut(s) 257, 413
MvnI CGCG 1 cut(s) 1154
MwoI GCNNNNNNNGC 6 cut(s) 381, 390, 552, 727, 1139, 1192
NciI CCSGG 3 cut(s) 241, 340, 395
NdeII GATC 3 cut(s) 19, 463, 741
NlaIII CATG 7 cut(s) 76, 337, 687, 797, 828, 1063, 1130
NlaIV GGNNCC 9 cut(s) 35, 157, 199, 402, 417, 570, 581, 928, 1119
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 3 cut(s) 9, 342, 663
NsbI TGCGCA 1 cut(s) 792
NsiI ATGCAT 1 cut(s) 826
PcsI WCGNNNNNNNCGW 1 cut(s) 877
PfeI GAWTC 1 cut(s) 366
Pfl23II CGTACG 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 30
PleI GAGTC 7 cut(s) 140, 193, 274, 349, 925, 964, 1156
PmaCI CACGTG 1 cut(s) 459
PmlI CACGTG 1 cut(s) 459
PpsI GAGTC 7 cut(s) 140, 193, 274, 349, 925, 964, 1156
Ppu21I YACGTR 1 cut(s) 459
PpuMI RGGWCCY 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 2 cut(s) 255, 411
PspCI CACGTG 1 cut(s) 459
PspEI GGTNACC 1 cut(s) 342
PspFI CCCAGC 3 cut(s) 23, 299, 1018
PspGI CCWGG 2 cut(s) 255, 411
PspLI CGTACG 1 cut(s) 135
PspN4I GGNNCC 9 cut(s) 35, 157, 199, 402, 417, 570, 581, 928, 1119
PspOMI GGGCCC 1 cut(s) 568
PspPI GGNCC 6 cut(s) 166, 401, 568, 569, 1193, 1230
PspPPI RGGWCCY 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 3 cut(s) 19, 463, 741
RsaI GTAC 2 cut(s) 137, 657
RsaNI GTAC 2 cut(s) 136, 656
SacI GAGCTC 1 cut(s) 176
SalI GTCGAC 1 cut(s) 352
SaqAI TTAA 2 cut(s) 245, 1181
Sau3AI GATC 3 cut(s) 19, 463, 741
Sau96I GGNCC 6 cut(s) 166, 401, 568, 569, 1193, 1230
ScaI AGTACT 1 cut(s) 657
SchI GAGTC 7 cut(s) 140, 194, 274, 349, 926, 964, 1156
ScrFI CCNGG 5 cut(s) 241, 257, 340, 395, 413
SduI GDGCHC 6 cut(s) 90, 176, 200, 572, 584, 674
SfcI CTRYAG 1 cut(s) 659
SgrAI CRCCGGYG 2 cut(s) 178, 929
SinI GGWCC 2 cut(s) 401, 1230
SmlI CTYRAG 1 cut(s) 1045
SmoI CTYRAG 1 cut(s) 1045
SsiI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 176
StyD4I CCNGG 5 cut(s) 239, 255, 338, 393, 411
StyI CCWWGG 1 cut(s) 1023
TaaI ACNGT 5 cut(s) 512, 663, 669, 1009, 1098
TaiI ACGT 2 cut(s) 66, 461
TaqI TCGA 2 cut(s) 144, 353
TaqII GACCGA 1 cut(s) 755
TatI WGTACW 1 cut(s) 655
TauI GCSGC 5 cut(s) 107, 110, 255, 479, 482
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 2 cut(s) 245, 1181
Tru9I TTAA 2 cut(s) 245, 1181
TscAI CASTG 4 cut(s) 517, 674, 702, 1114
TseFI GTSAC 3 cut(s) 9, 342, 663
TseI GCWGC 7 cut(s) 216, 319, 524, 546, 677, 730, 733
Tsp45I GTSAC 3 cut(s) 9, 342, 663
TspDTI ATGAA 6 cut(s) 327, 521, 672, 789, 1076, 1221
TspGWI ACGGA 5 cut(s) 123, 224, 283, 402, 579
TspRI CASTG 4 cut(s) 517, 674, 702, 1114
Van91I CCANNNNNTGG 1 cut(s) 30
VpaK11BI GGWCC 2 cut(s) 401, 1230
XmiI GTMKAC 2 cut(s) 353, 920
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.