Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011808

Physical Location & Seq

Genomic Coordinates Forward (+)

16853334 .. 16854409

Gene Structure 1076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G251600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGCTGAGTCACGGGACGATCCCGAGTTCTATCTCCCAACCCACTTCCTAACAGACGACGTCGTTCTGCACAACATGGACGACAACAGCTTCCACCAAAACGGCGTCGGATCAGTCGCCCGGTTCCCCACCGAGTTCCCGTACGAGTTCGATTCCTCCGACTCTAACTCAGCCCTCAGCTCGGCTGTCGAGTCCGTGGTCGGCTCCACTGAGACTGAGAGCAGCGACGAAGAGGACTTCCTCTCCGGGTTGACTCGCCGCCTCGCTCAGTCTTCGCTGCAGCAGACTCGCCGCCTCTCAACCCAGGTGGTTTGGGCATTTCGTCGAACAGGTGCTGTGCATCTCGTTTCTGAAGCAGAGGTGCAATTCCAGCTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.11

Weight (kDa)

4.39

Isoelectric Point (pI)

60.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011808)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G39870
fragaria_vesca	FvH4_7g23630 FvH4_7g23630
malus_domestica	MD01G1142200.v1.1 MD07G1207900.v1.1
prunus_persica	Prupe.2G243200_v2.0.a1 Prupe.4G251600_v2.0.a1
pyrus_communis	pycom01g16240 pycom07g19360
rosa_chinensis	RchiOBHm_Chr1g0368901
rosa_laevigata	RLG00000027178
rosa_multiflora	Rmu_sc0004250.1_g000045 Rmu_sc0030064.1_g000001
rosa_roxburghii	Rroxscaffold_4G00288220
rosa_rugosa	Rorug01G0345700
rosa_samantha	Rh1AG352700 Rh1BG316200 Rh1CG330900 Rh1DG347700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	63
AciI	CCGC	2 cut(s)	259, 292
AclWI	GGATC	2 cut(s)	14, 118
AcuI	CTGAAG	1 cut(s)	372
AcyI	GRCGYC	2 cut(s)	60, 105
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	181
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	3 cut(s)	90, 180, 373
AluI	AGCT	3 cut(s)	90, 180, 373
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	14, 118
AlwNI	CAGNNNCTG	1 cut(s)	335
Ama87I	CYCGRG	1 cut(s)	23
ApeKI	GCWGC	3 cut(s)	222, 277, 280
AsuC2I	CCSGG	2 cut(s)	121, 247
AvaI	CYCGRG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	176
BbvI	GCAGC	3 cut(s)	234, 264, 292
BceAI	ACGGC	1 cut(s)	118
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	1 cut(s)	305
BcnI	CCSGG	2 cut(s)	121, 247
BcoDI	GTCTC	1 cut(s)	206
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	5 cut(s)	223, 259, 278, 281, 292
BlsI	GCNGC	5 cut(s)	224, 260, 279, 282, 293
Bme1390I	CCNGG	3 cut(s)	121, 247, 305
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	125, 205
BmrFI	CCNGG	3 cut(s)	121, 247, 305
BmsI	GCATC	1 cut(s)	349
BpiI	GAAGAC	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	176
BpuMI	CCSGG	2 cut(s)	121, 247
BsaHI	GRCGYC	2 cut(s)	60, 105
BsaJI	CCNNGG	2 cut(s)	195, 303
BsaXI	ACNNNNNCTCC	2 cut(s)	227, 257
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	2 cut(s)	195, 303
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	5 cut(s)	183, 190, 201, 207, 281
BseXI	GCAGC	3 cut(s)	234, 264, 292
BsgI	GTGCAG	1 cut(s)	53
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	2 cut(s)	121, 246
BsiWI	CGTACG	1 cut(s)	141
BslFI	GGGAC	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	19, 110
BspACI	CCGC	2 cut(s)	259, 292
BspCNI	CTCAG	5 cut(s)	182, 189, 202, 208, 280
BspLI	GGNNCC	2 cut(s)	125, 205
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	2 cut(s)	14, 118
BssECI	CCNNGG	2 cut(s)	195, 303
BssMI	GATC	2 cut(s)	19, 110
BssNI	GRCGYC	2 cut(s)	60, 105
Bst2UI	CCWGG	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	2 cut(s)	60, 105
BstDEI	CTNAG	6 cut(s)	6, 169, 176, 210, 216, 267
BstDSI	CCRYGG	1 cut(s)	195
BstKTI	GATC	2 cut(s)	22, 113
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	19, 110
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	3 cut(s)	119, 245, 303
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	3 cut(s)	234, 264, 292
BstV2I	GAAGAC	1 cut(s)	264
BtgI	CCRYGG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	207
CaiI	CAGNNNCTG	1 cut(s)	335
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	1 cut(s)	76
CviJI	RGCY	7 cut(s)	5, 90, 173, 180, 185, 204, 373
CviKI_1	RGCY	7 cut(s)	5, 90, 173, 180, 185, 204, 373
CviQI	GTAC	1 cut(s)	142
DdeI	CTNAG	6 cut(s)	6, 169, 176, 210, 216, 267
DpnI	GATC	2 cut(s)	21, 112
DpnII	GATC	2 cut(s)	19, 110
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	303
FaeI	CATG	1 cut(s)	79
FaiI	YATR	1 cut(s)	77
FaqI	GGGAC	1 cut(s)	29
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	5 cut(s)	223, 259, 278, 281, 292
Fsp4HI	GCNGC	5 cut(s)	223, 259, 278, 281, 292
GluI	GCNGC	5 cut(s)	223, 259, 278, 281, 292
HapII	CCGG	2 cut(s)	121, 246
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	2 cut(s)	60, 105
Hin1II	CATG	1 cut(s)	79
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	6 cut(s)	8, 152, 161, 191, 253, 286
HpaII	CCGG	2 cut(s)	121, 246
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	3 cut(s)	110, 160, 352
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	1 cut(s)	252
Hpy99I	CGWCG	5 cut(s)	62, 65, 110, 230, 327
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	4 cut(s)	70, 280, 340, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	6 cut(s)	6, 169, 176, 210, 216, 267
HpySE526I	ACGT	1 cut(s)	60
Hsp92I	GRCGYC	2 cut(s)	60, 105
Hsp92II	CATG	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	19, 110
LmnI	GCTCC	1 cut(s)	209
LpnPI	CCDG	5 cut(s)	134, 259, 290, 315, 317
Lsp1109I	GCAGC	3 cut(s)	234, 264, 292
LweI	GCATC	1 cut(s)	349
MaeII	ACGT	1 cut(s)	60
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	2 cut(s)	21, 112
MboI	GATC	2 cut(s)	19, 110
MboII	GAAGA	2 cut(s)	242, 264
MluCI	AATT	1 cut(s)	365
MlyI	GAGTC	5 cut(s)	17, 155, 200, 247, 280
MmeI	TCCRAC	2 cut(s)	88, 183
MnlI	CCTC	7 cut(s)	166, 185, 226, 251, 272, 305, 352
MspI	CCGG	2 cut(s)	121, 246
MspR9I	CCNGG	3 cut(s)	121, 247, 305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	2 cut(s)	121, 247
NdeII	GATC	2 cut(s)	19, 110
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	125, 205
NmeAIII	GCCGAG	1 cut(s)	161
NmuCI	GTSAC	1 cut(s)	9
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	152
Pfl23II	CGTACG	1 cut(s)	141
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	5 cut(s)	224, 260, 279, 282, 293
PleI	GAGTC	5 cut(s)	16, 155, 199, 247, 280
PpsI	GAGTC	5 cut(s)	16, 155, 199, 247, 280
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspLI	CGTACG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	125, 205
PstI	CTGCAG	1 cut(s)	282
PstNI	CAGNNNCTG	1 cut(s)	335
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SatI	GCNGC	5 cut(s)	223, 259, 278, 281, 292
Sau3AI	GATC	2 cut(s)	19, 110
SchI	GAGTC	5 cut(s)	17, 155, 200, 247, 280
ScrFI	CCNGG	3 cut(s)	121, 247, 305
SetI	ASST	7 cut(s)	63, 92, 182, 309, 334, 363, 375
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	259, 292
StyD4I	CCNGG	3 cut(s)	119, 245, 303
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	3 cut(s)	150, 189, 325
TasI	AATT	1 cut(s)	365
TauI	GCSGC	2 cut(s)	261, 294
TfiI	GAWTC	1 cut(s)	152
TscAI	CASTG	1 cut(s)	214
TseFI	GTSAC	1 cut(s)	9
TseI	GCWGC	3 cut(s)	222, 277, 280
Tsp45I	GTSAC	1 cut(s)	9
TspGWI	ACGGA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.