FvH4_7g23630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0011808
Physical Location & Seq
Forward (+)
18395903 .. 18398622
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g23630.t2

Sequence Viewer

Length: 1164 bp
ATGGCCAAGTCACCGGAGGATCCCAGTTTCTGGCTCCCTTCCGATTTCCTTACAAACGTCGACGACGTTCACATCATGAACCGCATCTTCCCCACCGAGTTTCCATACGAGTTCGACTCGTCGTCCGGTCCCAACTCGGCCCTGAGCTCCCCGGTGGAGGGCTCCACCGAGACGGAGAGCAGCAGCGACGAGGATGACTTCCTCGCCGGGTTAACTCGCCGCCTGGCTCAGTCCTCTCTCAGCCAGACTCAGAAGCTTTCCGTCCCCAACTTCACTCAAGAAAAGCAGCCTGAGTGGGTCATGTCCGGGTCACCTCAGTCGACTCTGAGCGGAATCGGGAGCTGGTCGAGCAACGGCAGCCCGGCGGCGCCTTCTTCTCAGGTGCCGTCTCCTCCAACGACGCCGTTTGGAGGTCAGAACGACACCTGGGACCTGATTTACGCCGCCGCCGGACAAGTGGCCAGGTTGAAGATGAACAGTGTCGACGGAGCAGCCAAGTTTGGTAACAACAACGGCAGAGGGCTTCTGGGCCCACCTAGAACCCCAAGTCCGTCTCTTCCTTGTGTCCAAAACCAAAGCCCCTTCACTCAGTTTCAGCAAATGAGACAAGACCAAGTACTAAACTCACAGTGCTCTGCTCCTTGGGGAAAATCTATGAAGCTTAATAACTGGTCAGCTCAGCAACAACAGCAGCAACAGATCCAAAGCAGAGGAAGAAACATTGTTGGTTACGAAAGTGGAAGATGTCAAAGTGCATGGCCTCCTCTTCAAGCTCAGCAACAACATCCACATCGTAATACCCGACCCGTTTTGCCTAACGGGTCTAACGTGAAAAGGGAGTCTACCGGCACCGGTGTCTTCTTGCCTCGCCGGTACTCCAACCCCAGTCCCACTCCTGAGCCTCCTCGCAAAAGAGCAGGTTGTCCAACTGTTTTGCTCCCAGCCAAGGTGGTTCAAGCTCTGAACTTGAGCTTTGAGGACATGAATGTTCATCATCATCAGCAACACCATCTTCAGCCGCGATTCAACAATACTGCTTTGGCTCCAAACCATGAGGCTCTGGTGGCAAGAAGAAACGCCCTATTGACTCAGCAGAGAAGGGGTTTAAGGCAAGACGGGCCATTAAACTATGAAGTGCGCTTGCCTCAGGAATGGACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

388

Amino Acids

42.8

Weight (kDa)

8.91

Isoelectric Point (pI)

66.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 908
AccB1I GGYRCC 3 cut(s) 367, 382, 848
AccB7I CCANNNNNTGG 1 cut(s) 30
AccBSI CCGCTC 1 cut(s) 330
AccI GTMKAC 4 cut(s) 60, 320, 483, 842
AccII CGCG 1 cut(s) 1021
AciI CCGC 7 cut(s) 82, 220, 330, 365, 444, 447, 1019
AclWI GGATC 3 cut(s) 14, 27, 694
AcoI YGGCCR 2 cut(s) 3, 459
AcuI CTGAAG 1 cut(s) 998
AcyI GRCGYC 2 cut(s) 368, 401
AfaI GTAC 2 cut(s) 618, 875
AfiI CCNNNNNNNGG 5 cut(s) 30, 157, 158, 410, 946
AgeI ACCGGT 1 cut(s) 851
AgsI TTSAA 4 cut(s) 469, 770, 956, 1027
AhdI GACNNNNNGTC 1 cut(s) 121
AjnI CCWGG 3 cut(s) 222, 425, 461
AloI GAACNNNNNNTCC 2 cut(s) 532, 564
AluBI AGCT 8 cut(s) 147, 256, 342, 661, 677, 773, 959, 972
AluI AGCT 8 cut(s) 147, 256, 342, 661, 677, 773, 959, 972
Alw21I GWGCWC 2 cut(s) 149, 635
Alw26I GTCTC 4 cut(s) 164, 393, 558, 598
AlwI GGATC 3 cut(s) 14, 27, 694
AlwNI CAGNNNCTG 1 cut(s) 30
AoxI GGCC 6 cut(s) 3, 138, 459, 529, 758, 1118
ApaI GGGCCC 1 cut(s) 533
ApeKI GCWGC 6 cut(s) 180, 183, 286, 357, 491, 691
AsiGI ACCGGT 1 cut(s) 851
AspLEI GCGC 2 cut(s) 370, 1140
AspS9I GGNCC 7 cut(s) 128, 139, 430, 529, 530, 1118, 1155
AsuC2I CCSGG 4 cut(s) 152, 208, 307, 362
AsuHPI GGTGA 2 cut(s) 3, 303
AvaII GGWCC 3 cut(s) 128, 430, 1155
AxyI CCTNAGG 1 cut(s) 1146
BaeGI GKGCMC 1 cut(s) 533
BalI TGGCCA 2 cut(s) 5, 461
BamHI GGATCC 1 cut(s) 19
BanI GGYRCC 3 cut(s) 367, 382, 848
BanII GRGCYC 3 cut(s) 149, 164, 533
BbsI GAAGAC 1 cut(s) 850
Bbv12I GWGCWC 2 cut(s) 149, 635
BbvI GCAGC 6 cut(s) 192, 195, 298, 369, 503, 703
BccI CCATC 1 cut(s) 1017
BceAI ACGGC 4 cut(s) 370, 370, 388, 529
BciT130I CCWGG 3 cut(s) 224, 427, 463
BcnI CCSGG 4 cut(s) 152, 208, 307, 362
BcoDI GTCTC 4 cut(s) 164, 393, 558, 598
BfaI CTAG 1 cut(s) 537
BfoI RGCGCY 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 908
BlpI GCTNAGC 2 cut(s) 678, 774
BmcAI AGTACT 1 cut(s) 618
Bme1390I CCNGG 7 cut(s) 152, 208, 224, 307, 362, 427, 463
Bme18I GGWCC 3 cut(s) 128, 430, 1155
BmeRI GACNNNNNGTC 1 cut(s) 121
BmgT120I GGNCC 7 cut(s) 128, 139, 430, 529, 530, 1118, 1155
BmrFI CCNGG 7 cut(s) 152, 208, 224, 307, 362, 427, 463
BmrI ACTGGG 2 cut(s) 18, 879
BmsI GCATC 1 cut(s) 93
BmuI ACTGGG 2 cut(s) 18, 879
BpiI GAAGAC 1 cut(s) 850
BplI GAGNNNNNCTC 2 cut(s) 101, 133
Bpu10I CCTNAGC 2 cut(s) 143, 897
Bpu1102I GCTNAGC 2 cut(s) 678, 774
BpuEI CTTGAG 2 cut(s) 261, 988
BpuMI CCSGG 4 cut(s) 152, 208, 307, 362
BsaHI GRCGYC 2 cut(s) 368, 401
BsaJI CCNNGG 4 cut(s) 150, 426, 641, 945
BsaWI WCCGGW 3 cut(s) 13, 125, 851
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 157, 158, 410, 946
Bse118I RCCGGY 3 cut(s) 845, 851, 870
Bse1I ACTGG 3 cut(s) 24, 674, 885
Bse21I CCTNAGG 1 cut(s) 1146
BseBI CCWGG 3 cut(s) 224, 427, 463
BseDI CCNNGG 4 cut(s) 150, 426, 641, 945
BseGI GGATG 2 cut(s) 199, 784
BseLI CCNNNNNNNGG 5 cut(s) 30, 157, 158, 410, 946
BseNI ACTGG 3 cut(s) 24, 674, 885
BseRI GAGGAG 3 cut(s) 381, 753, 894
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 6 cut(s) 192, 195, 298, 369, 503, 703
BseYI CCCAGC 1 cut(s) 940
Bsh1236I CGCG 1 cut(s) 1021
BshFI GGCC 6 cut(s) 5, 140, 461, 531, 760, 1120
BshNI GGYRCC 3 cut(s) 367, 382, 848
BshTI ACCGGT 1 cut(s) 851
BsiHKAI GWGCWC 2 cut(s) 149, 635
BslFI GGGAC 4 cut(s) 114, 248, 443, 873
BslI CCNNNNNNNGG 5 cut(s) 30, 157, 158, 410, 946
BsmAI GTCTC 4 cut(s) 164, 393, 558, 598
BsmBI CGTCTC 3 cut(s) 164, 393, 558
BsmFI GGGAC 4 cut(s) 114, 248, 443, 873
BsnI GGCC 6 cut(s) 5, 140, 461, 531, 760, 1120
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 4 cut(s) 149, 164, 533, 635
Bsp143I GATC 2 cut(s) 19, 699
Bsp1720I GCTNAGC 2 cut(s) 678, 774
BspACI CCGC 7 cut(s) 82, 220, 330, 365, 444, 447, 1019
BspANI GGCC 6 cut(s) 5, 140, 461, 531, 760, 1120
BspFNI CGCG 1 cut(s) 1021
BspHI TCATGA 1 cut(s) 75
BspMI ACCTGC 1 cut(s) 908
BspPI GGATC 3 cut(s) 14, 27, 694
BspT107I GGYRCC 3 cut(s) 367, 382, 848
BsrBI CCGCTC 1 cut(s) 330
BsrFI RCCGGY 3 cut(s) 845, 851, 870
BsrI ACTGG 3 cut(s) 24, 674, 885
BssAI RCCGGY 3 cut(s) 845, 851, 870
BssECI CCNNGG 4 cut(s) 150, 426, 641, 945
BssMI GATC 2 cut(s) 19, 699
BssNI GRCGYC 2 cut(s) 368, 401
BssT1I CCWWGG 2 cut(s) 641, 945
Bst2UI CCWGG 3 cut(s) 224, 427, 463
Bst4CI ACNGT 3 cut(s) 479, 630, 931
Bst6I CTCTTC 2 cut(s) 561, 771
BstACI GRCGYC 2 cut(s) 368, 401
BstC8I GCNNGC 1 cut(s) 1142
BstEII GGTNACC 1 cut(s) 309
BstF5I GGATG 2 cut(s) 199, 784
BstFNI CGCG 1 cut(s) 1021
BstH2I RGCGCY 1 cut(s) 371
BstHHI GCGC 2 cut(s) 370, 1140
BstKTI GATC 2 cut(s) 22, 702
BstMAI GTCTC 4 cut(s) 164, 393, 558, 598
BstMBI GATC 2 cut(s) 19, 699
BstMWI GCNNNNNNNGC 5 cut(s) 348, 357, 688, 1064, 1117
BstNI CCWGG 3 cut(s) 224, 427, 463
BstPI GGTNACC 1 cut(s) 309
BstSCI CCNGG 7 cut(s) 150, 206, 222, 305, 360, 425, 461
BstSLI GKGCMC 1 cut(s) 533
BstUI CGCG 1 cut(s) 1021
BstV1I GCAGC 6 cut(s) 192, 195, 298, 369, 503, 703
BstV2I GAAGAC 1 cut(s) 850
BstX2I RGATCY 2 cut(s) 19, 699
BstYI RGATCY 2 cut(s) 19, 699
Bsu36I CCTNAGG 1 cut(s) 1146
BsuRI GGCC 6 cut(s) 5, 140, 461, 531, 760, 1120
BtsCI GGATG 2 cut(s) 199, 784
BtsIMutI CAGTG 2 cut(s) 484, 635
BveI ACCTGC 1 cut(s) 908
Cac8I GCNNGC 1 cut(s) 1142
CaiI CAGNNNCTG 1 cut(s) 30
CciI TCATGA 1 cut(s) 75
CfoI GCGC 2 cut(s) 370, 1140
Cfr10I RCCGGY 3 cut(s) 845, 851, 870
Cfr13I GGNCC 7 cut(s) 128, 139, 430, 529, 530, 1118, 1155
CseI GACGC 1 cut(s) 409
Csp6I GTAC 2 cut(s) 617, 874
CspAI ACCGGT 1 cut(s) 851
CviAII CATG 5 cut(s) 76, 301, 756, 982, 1052
CviQI GTAC 2 cut(s) 617, 874
DinI GGCGCC 1 cut(s) 369
DpnI GATC 2 cut(s) 21, 701
DpnII GATC 2 cut(s) 19, 699
DriI GACNNNNNGTC 1 cut(s) 121
EaeI YGGCCR 2 cut(s) 3, 459
Eam1104I CTCTTC 2 cut(s) 561, 771
Eam1105I GACNNNNNGTC 1 cut(s) 121
EarI CTCTTC 2 cut(s) 561, 771
Ecl136II GAGCTC 1 cut(s) 147
Eco130I CCWWGG 2 cut(s) 641, 945
Eco24I GRGCYC 3 cut(s) 149, 164, 533
Eco47I GGWCC 3 cut(s) 128, 430, 1155
Eco53kI GAGCTC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 998
Eco81I CCTNAGG 1 cut(s) 1146
Eco91I GGTNACC 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 430
EcoO65I GGTNACC 1 cut(s) 309
EcoRII CCWGG 3 cut(s) 222, 425, 461
EcoT14I CCWWGG 2 cut(s) 641, 945
EcoT38I GRGCYC 3 cut(s) 149, 164, 533
EgeI GGCGCC 1 cut(s) 369
EheI GGCGCC 1 cut(s) 369
ErhI CCWWGG 2 cut(s) 641, 945
Esp3I CGTCTC 3 cut(s) 164, 393, 558
FaeI CATG 5 cut(s) 79, 304, 759, 985, 1055
FaiI YATR 8 cut(s) 77, 106, 302, 656, 757, 983, 1053, 1131
FaqI GGGAC 4 cut(s) 114, 248, 443, 873
FatI CATG 5 cut(s) 75, 300, 755, 981, 1051
FblI GTMKAC 4 cut(s) 60, 320, 483, 842
FokI GGATG 2 cut(s) 206, 771
FriOI GRGCYC 3 cut(s) 149, 164, 533
FspBI CTAG 1 cut(s) 537
GlaI GCGC 2 cut(s) 369, 1139
GsaI CCCAGC 1 cut(s) 944
HaeII RGCGCY 1 cut(s) 371
HaeIII GGCC 6 cut(s) 5, 140, 461, 531, 760, 1120
HgaI GACGC 1 cut(s) 409
HhaI GCGC 2 cut(s) 370, 1140
Hin1I GRCGYC 2 cut(s) 368, 401
Hin1II CATG 5 cut(s) 79, 304, 759, 985, 1055
Hin6I GCGC 2 cut(s) 368, 1138
HinP1I GCGC 2 cut(s) 368, 1138
HincII GTYRAC 4 cut(s) 61, 213, 321, 484
HindII GTYRAC 4 cut(s) 61, 213, 321, 484
HindIII AAGCTT 2 cut(s) 254, 659
HinfI GANTC 7 cut(s) 116, 247, 322, 333, 839, 1023, 1087
HpaI GTTAAC 1 cut(s) 213
HphI GGTGA 2 cut(s) 3, 303
Hpy166II GTNNAC 6 cut(s) 61, 70, 213, 321, 484, 843
Hpy188I TCNGA 5 cut(s) 43, 252, 327, 417, 963
Hpy188III TCNNGA 5 cut(s) 76, 278, 337, 896, 1148
Hpy8I GTNNAC 6 cut(s) 61, 70, 213, 321, 484, 843
Hpy99I CGWCG 7 cut(s) 62, 65, 68, 124, 191, 403, 488
HpyAV CCTTC 4 cut(s) 48, 381, 592, 1092
HpyCH4III ACNGT 3 cut(s) 479, 630, 931
HpyCH4IV ACGT 3 cut(s) 57, 66, 828
HpyCH4V TGCA 1 cut(s) 755
HpyF10VI GCNNNNNNNGC 5 cut(s) 348, 357, 688, 1064, 1117
HpySE526I ACGT 3 cut(s) 57, 66, 828
Hsp92I GRCGYC 2 cut(s) 368, 401
Hsp92II CATG 5 cut(s) 79, 304, 759, 985, 1055
HspAI GCGC 2 cut(s) 368, 1138
KasI GGCGCC 1 cut(s) 367
KspAI GTTAAC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 19, 699
LmnI GCTCC 8 cut(s) 39, 152, 167, 339, 488, 643, 942, 1048
Lsp1109I GCAGC 6 cut(s) 192, 195, 298, 369, 503, 703
LweI GCATC 1 cut(s) 93
MaeI CTAG 1 cut(s) 537
MaeII ACGT 3 cut(s) 57, 66, 828
MaeIII GTNAC 4 cut(s) 9, 309, 503, 728
MalI GATC 2 cut(s) 21, 701
MbiI CCGCTC 1 cut(s) 330
MboI GATC 2 cut(s) 19, 699
MflI RGATCY 2 cut(s) 19, 699
MhlI GDGCHC 4 cut(s) 149, 164, 533, 635
MlsI TGGCCA 2 cut(s) 5, 461
MluNI TGGCCA 2 cut(s) 5, 461
Mly113I GGCGCC 1 cut(s) 368
MlyI GAGTC 5 cut(s) 110, 241, 316, 848, 1081
MmeI TCCRAC 3 cut(s) 419, 903, 950
Mox20I TGGCCA 2 cut(s) 5, 461
MscI TGGCCA 2 cut(s) 5, 461
MseI TTAA 4 cut(s) 212, 663, 1106, 1124
Msp20I TGGCCA 2 cut(s) 5, 461
MspR9I CCNGG 7 cut(s) 152, 208, 224, 307, 362, 427, 463
MvaI CCWGG 3 cut(s) 224, 427, 463
MvnI CGCG 1 cut(s) 1021
MwoI GCNNNNNNNGC 5 cut(s) 348, 357, 688, 1064, 1117
NarI GGCGCC 1 cut(s) 368
NciI CCSGG 4 cut(s) 152, 208, 307, 362
NdeII GATC 2 cut(s) 19, 699
NlaIII CATG 5 cut(s) 79, 304, 759, 985, 1055
NmeAIII GCCGAG 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 9, 309
PagI TCATGA 1 cut(s) 75
PcsI WCGNNNNNNNCGW 3 cut(s) 63, 799, 825
PfeI GAWTC 2 cut(s) 333, 1023
PflMI CCANNNNNTGG 1 cut(s) 30
PinAI ACCGGT 1 cut(s) 851
PleI GAGTC 5 cut(s) 110, 241, 316, 847, 1081
PluTI GGCGCC 1 cut(s) 371
PpsI GAGTC 5 cut(s) 110, 241, 316, 847, 1081
PpuMI RGGWCCY 1 cut(s) 430
Psp124BI GAGCTC 1 cut(s) 149
Psp5II RGGWCCY 1 cut(s) 430
Psp6I CCWGG 3 cut(s) 222, 425, 461
PspEI GGTNACC 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 940
PspGI CCWGG 3 cut(s) 222, 425, 461
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 7 cut(s) 128, 139, 430, 529, 530, 1118, 1155
PspPPI RGGWCCY 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 2 cut(s) 19, 699
RsaI GTAC 2 cut(s) 618, 875
RsaNI GTAC 2 cut(s) 617, 874
SacI GAGCTC 1 cut(s) 149
SalI GTCGAC 3 cut(s) 59, 319, 482
SaqAI TTAA 4 cut(s) 212, 663, 1106, 1124
Sau3AI GATC 2 cut(s) 19, 699
Sau96I GGNCC 7 cut(s) 128, 139, 430, 529, 530, 1118, 1155
ScaI AGTACT 1 cut(s) 618
SchI GAGTC 5 cut(s) 110, 241, 316, 848, 1081
ScrFI CCNGG 7 cut(s) 152, 208, 224, 307, 362, 427, 463
SduI GDGCHC 4 cut(s) 149, 164, 533, 635
SfaNI GCATC 1 cut(s) 93
SfoI GGCGCC 1 cut(s) 369
SgrAI CRCCGGYG 1 cut(s) 851
SgrDI CGTCGACG 1 cut(s) 59
SinI GGWCC 3 cut(s) 128, 430, 1155
SmlI CTYRAG 2 cut(s) 276, 967
SmoI CTYRAG 2 cut(s) 276, 967
SsiI CCGC 7 cut(s) 82, 220, 330, 365, 444, 447, 1019
SspDI GGCGCC 1 cut(s) 367
SspMI CTAG 1 cut(s) 537
SstI GAGCTC 1 cut(s) 149
StyD4I CCNGG 7 cut(s) 150, 206, 222, 305, 360, 425, 461
StyI CCWWGG 2 cut(s) 641, 945
TaaI ACNGT 3 cut(s) 479, 630, 931
TaiI ACGT 3 cut(s) 60, 69, 831
TaqI TCGA 5 cut(s) 60, 114, 320, 347, 483
TatI WGTACW 1 cut(s) 616
TauI GCSGC 5 cut(s) 222, 368, 446, 449, 1021
TfiI GAWTC 2 cut(s) 333, 1023
Tru1I TTAA 4 cut(s) 212, 663, 1106, 1124
Tru9I TTAA 4 cut(s) 212, 663, 1106, 1124
TscAI CASTG 2 cut(s) 484, 635
TseFI GTSAC 2 cut(s) 9, 309
TseI GCWGC 6 cut(s) 180, 183, 286, 357, 491, 691
Tsp45I GTSAC 2 cut(s) 9, 309
TspDTI ATGAA 6 cut(s) 92, 488, 671, 980, 998, 1146
TspGWI ACGGA 4 cut(s) 188, 250, 501, 540
TspRI CASTG 2 cut(s) 484, 635
Van91I CCANNNNNTGG 1 cut(s) 30
VpaK11BI GGWCC 3 cut(s) 128, 430, 1155
XmiI GTMKAC 4 cut(s) 60, 320, 483, 842
XspI CTAG 1 cut(s) 537
ZrmI AGTACT 1 cut(s) 618
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.