Rh1BG316200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0011808
Physical Location & Seq
Forward (+)
44994575 .. 45000631
6057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG316200.1

Sequence Viewer

Length: 1095 bp
ATGGCTAAGTCACCGGAAGATCCCAGCTTCTGGCTCCCCTCTGATTTCCTTGCCAACGACGACGTTCACCTCATGGACAACAAAGGCCCCAGCTTCCGCAGAACCGCCGCTGTCTCCTTCCCCACCGAGTTTCCGTACGAGTTCGACTCGTCCGGTTCCAACTCGGCCCTGAGCTCGCCGGTGGAGTCCGATGTGGGCTCCACCGAGACGGAGAGCAGCGACGAGGAGGACTTCCTCGCCGGGTTAACTCGCCGCCTGGCTCAGTCCTCGCTCAGCCAGACTCAGAAGCTCACCGTCCCCAGCTTCACTAATGAAAAGCAGCCCGAGTGGGTCATGTCCGGGTCACCTCAGTCGACTCTGAGCGGAATCGGGAGCTGGTCTAGCAACGGAAGCCCGGCGGGTCCTTCTTCCCAGGTGCCGTCTCCTCCAACGACGCCGTTTGGGGGTCAAAACGACACCTGGGATCTGATTTACGCCGCCGCCGGACAAGTGGCGAGGTTGAAGATGAACAGTGTTGAAGGAGCAGCCAAGTTCAGTAACAACAACAGCAACGGCAGAGGGCTTCTGGGCCCACCTCGGAGCCCAAGTCCGTCTCTTCCTTGCGTCCAAAACCAAAGCCCCTTCACCCAGTTTCAGCAAGTGAGTCAAGACCAAGTACTACAGTCACAATGCTCTGCTGCTCCTTGGGGAAAACCAGTGAAGCTTAACTGGTCAGCTCATCAACACCAGCAGCAGCAACAGATCCAAAACAGAGGAAAAAACATTGGTGTGTATGAAAGTGGAAGATGTGCGCATGGTGTGTGTTTGCCCCAATCTCAAAATGCATGGCCTCCTCTTCAAGCTCAACACCAAAACCAACAACACCCACATCGCAATACCCGACCCGTTTTGCCTAATGGGTCTAATGTCAAGAGGGAGTCTACCGGCACCGGCGTCTTCTTGCCTCGCAGATACTCCAACCCCAATGCCACTCCTGAGCCACCTCGCAAAAGAGCAGGTAACCAGTCAGTGATTTGGTTATTTGGGGTTATTGACTTATTGTACCATTTTGGGGGTTATTTTGTTTTGACATTTTTGAAAATTTTTTGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

39.8

Weight (kDa)

7.73

Isoelectric Point (pI)

65.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 792
Acc36I ACCTGC 1 cut(s) 986
AccB1I GGYRCC 2 cut(s) 415, 926
AccB7I CCANNNNNTGG 1 cut(s) 30
AccBSI CCGCTC 1 cut(s) 363
AccI GTMKAC 2 cut(s) 353, 920
AciI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
AclWI GGATC 3 cut(s) 14, 471, 736
AcsI RAATTY 1 cut(s) 1080
AcyI GRCGYC 2 cut(s) 434, 933
AfaI GTAC 3 cut(s) 137, 657, 1043
AfiI CCNNNNNNNGG 3 cut(s) 30, 443, 1051
AgsI TTSAA 4 cut(s) 502, 518, 839, 1078
AjnI CCWGG 3 cut(s) 255, 411, 458
AluBI AGCT 9 cut(s) 27, 93, 174, 289, 303, 375, 703, 716, 842
AluI AGCT 9 cut(s) 27, 93, 174, 289, 303, 375, 703, 716, 842
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 4 cut(s) 118, 200, 426, 597
AlwI GGATC 3 cut(s) 14, 471, 736
AlwNI CAGNNNCTG 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 4 cut(s) 85, 165, 568, 827
ApaI GGGCCC 1 cut(s) 572
ApeKI GCWGC 6 cut(s) 216, 319, 524, 677, 730, 733
ApoI RAATTY 1 cut(s) 1080
AspLEI GCGC 1 cut(s) 793
AspS9I GGNCC 5 cut(s) 86, 166, 401, 568, 569
AsuC2I CCSGG 3 cut(s) 241, 340, 395
AsuHPI GGTGA 5 cut(s) 3, 59, 283, 336, 616
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 572
BanI GGYRCC 2 cut(s) 415, 926
BanII GRGCYC 4 cut(s) 176, 200, 572, 584
BbsI GAAGAC 1 cut(s) 928
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 6 cut(s) 228, 331, 536, 664, 742, 745
BceAI ACGGC 3 cut(s) 403, 421, 568
BciT130I CCWGG 3 cut(s) 257, 413, 460
BcnI CCSGG 3 cut(s) 241, 340, 395
BcoDI GTCTC 4 cut(s) 118, 200, 426, 597
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 659
BfuAI ACCTGC 1 cut(s) 986
BlpI GCTNAGC 1 cut(s) 272
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 6 cut(s) 241, 257, 340, 395, 413, 460
Bme18I GGWCC 1 cut(s) 401
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 5 cut(s) 86, 166, 401, 568, 569
BmiI GGNNCC 9 cut(s) 35, 88, 157, 199, 402, 417, 570, 581, 928
BmrFI CCNGG 6 cut(s) 241, 257, 340, 395, 413, 460
BmrI ACTGGG 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 928
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bpu10I CCTNAGC 2 cut(s) 170, 975
Bpu1102I GCTNAGC 1 cut(s) 272
BpuMI CCSGG 3 cut(s) 241, 340, 395
BsaHI GRCGYC 2 cut(s) 434, 933
BsaJI CCNNGG 4 cut(s) 411, 459, 575, 683
BsaWI WCCGGW 2 cut(s) 13, 152
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 443, 1051
Bse118I RCCGGY 3 cut(s) 178, 923, 929
Bse1I ACTGG 4 cut(s) 628, 695, 713, 1003
BseBI CCWGG 3 cut(s) 257, 413, 460
BseDI CCNNGG 4 cut(s) 411, 459, 575, 683
BseLI CCNNNNNNNGG 3 cut(s) 30, 443, 1051
BseMII CTCAG 7 cut(s) 161, 275, 286, 296, 350, 362, 966
BseNI ACTGG 4 cut(s) 628, 695, 713, 1003
BseRI GAGGAG 3 cut(s) 239, 414, 822
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 6 cut(s) 228, 331, 536, 664, 742, 745
BseYI CCCAGC 3 cut(s) 23, 89, 299
BshFI GGCC 4 cut(s) 87, 167, 570, 829
BshNI GGYRCC 2 cut(s) 415, 926
BsiHKAI GWGCWC 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
BsiWI CGTACG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 30, 443, 1051
BsmAI GTCTC 4 cut(s) 118, 200, 426, 597
BsmBI CGTCTC 3 cut(s) 200, 426, 597
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 4 cut(s) 87, 167, 570, 829
BsoBI CYCGRG 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 568
Bsp1286I GDGCHC 4 cut(s) 176, 200, 572, 584
Bsp143I GATC 3 cut(s) 19, 463, 741
Bsp1720I GCTNAGC 1 cut(s) 272
BspACI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
BspANI GGCC 4 cut(s) 87, 167, 570, 829
BspCNI CTCAG 7 cut(s) 162, 274, 285, 295, 351, 361, 967
BspLI GGNNCC 9 cut(s) 35, 88, 157, 199, 402, 417, 570, 581, 928
BspMI ACCTGC 1 cut(s) 986
BspPI GGATC 3 cut(s) 14, 471, 736
BspT107I GGYRCC 2 cut(s) 415, 926
BsrBI CCGCTC 1 cut(s) 363
BsrFI RCCGGY 3 cut(s) 178, 923, 929
BsrI ACTGG 4 cut(s) 628, 695, 713, 1003
BssAI RCCGGY 3 cut(s) 178, 923, 929
BssECI CCNNGG 4 cut(s) 411, 459, 575, 683
BssMI GATC 3 cut(s) 19, 463, 741
BssNI GRCGYC 2 cut(s) 434, 933
BssT1I CCWWGG 1 cut(s) 683
Bst2UI CCWGG 3 cut(s) 257, 413, 460
Bst4CI ACNGT 3 cut(s) 295, 512, 663
Bst6I CTCTTC 2 cut(s) 600, 840
BstACI GRCGYC 2 cut(s) 434, 933
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 8 cut(s) 6, 170, 261, 272, 282, 348, 359, 975
BstEII GGTNACC 2 cut(s) 342, 998
BstHHI GCGC 1 cut(s) 793
BstKTI GATC 3 cut(s) 22, 466, 744
BstMAI GTCTC 4 cut(s) 118, 200, 426, 597
BstMBI GATC 3 cut(s) 19, 463, 741
BstMWI GCNNNNNNNGC 2 cut(s) 381, 390
BstNI CCWGG 3 cut(s) 257, 413, 460
BstPI GGTNACC 2 cut(s) 342, 998
BstSCI CCNGG 6 cut(s) 239, 255, 338, 393, 411, 458
BstSFI CTRYAG 1 cut(s) 659
BstSLI GKGCMC 1 cut(s) 572
BstV1I GCAGC 6 cut(s) 228, 331, 536, 664, 742, 745
BstV2I GAAGAC 1 cut(s) 928
BstX2I RGATCY 3 cut(s) 19, 463, 741
BstYI RGATCY 3 cut(s) 19, 463, 741
BsuRI GGCC 4 cut(s) 87, 167, 570, 829
BtgZI GCGATG 1 cut(s) 854
BtsIMutI CAGTG 3 cut(s) 517, 702, 1014
BveI ACCTGC 1 cut(s) 986
Cac8I GCNNGC 1 cut(s) 176
CaiI CAGNNNCTG 1 cut(s) 30
CfoI GCGC 1 cut(s) 793
Cfr10I RCCGGY 3 cut(s) 178, 923, 929
Cfr13I GGNCC 5 cut(s) 86, 166, 401, 568, 569
CseI GACGC 3 cut(s) 442, 592, 922
Csp6I GTAC 3 cut(s) 136, 656, 1042
CviAII CATG 4 cut(s) 73, 334, 794, 825
CviQI GTAC 3 cut(s) 136, 656, 1042
DdeI CTNAG 8 cut(s) 6, 170, 261, 272, 282, 348, 359, 975
DpnI GATC 3 cut(s) 21, 465, 743
DpnII GATC 3 cut(s) 19, 463, 741
Eam1104I CTCTTC 2 cut(s) 600, 840
EarI CTCTTC 2 cut(s) 600, 840
Ecl136II GAGCTC 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 683
Eco24I GRGCYC 4 cut(s) 176, 200, 572, 584
Eco47I GGWCC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 174
Eco88I CYCGRG 1 cut(s) 323
Eco91I GGTNACC 2 cut(s) 342, 998
EcoICRI GAGCTC 1 cut(s) 174
EcoO109I RGGNCCY 2 cut(s) 86, 401
EcoO65I GGTNACC 2 cut(s) 342, 998
EcoRII CCWGG 3 cut(s) 255, 411, 458
EcoT14I CCWWGG 1 cut(s) 683
EcoT22I ATGCAT 1 cut(s) 826
EcoT38I GRGCYC 4 cut(s) 176, 200, 572, 584
ErhI CCWWGG 1 cut(s) 683
Esp3I CGTCTC 3 cut(s) 200, 426, 597
FaeI CATG 4 cut(s) 76, 337, 797, 828
FaiI YATR 6 cut(s) 74, 335, 774, 795, 826, 1093
FaqI GGGAC 1 cut(s) 281
FatI CATG 4 cut(s) 72, 333, 793, 824
FauI CCCGC 1 cut(s) 391
FblI GTMKAC 2 cut(s) 353, 920
FriOI GRGCYC 4 cut(s) 176, 200, 572, 584
FspAI RTGCGCAY 1 cut(s) 792
FspBI CTAG 1 cut(s) 381
FspI TGCGCA 1 cut(s) 792
GlaI GCGC 1 cut(s) 792
GsaI CCCAGC 3 cut(s) 27, 93, 303
HaeIII GGCC 4 cut(s) 87, 167, 570, 829
HapII CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
HgaI GACGC 3 cut(s) 442, 592, 922
HhaI GCGC 1 cut(s) 793
Hin1I GRCGYC 2 cut(s) 434, 933
Hin1II CATG 4 cut(s) 76, 337, 797, 828
Hin6I GCGC 1 cut(s) 791
HinP1I GCGC 1 cut(s) 791
HincII GTYRAC 2 cut(s) 246, 354
HindII GTYRAC 2 cut(s) 246, 354
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 7 cut(s) 146, 185, 280, 355, 366, 643, 917
HpaI GTTAAC 1 cut(s) 246
HpaII CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
HphI GGTGA 5 cut(s) 3, 59, 283, 336, 616
Hpy166II GTNNAC 4 cut(s) 67, 246, 354, 921
Hpy188I TCNGA 6 cut(s) 43, 190, 285, 360, 468, 579
Hpy188III TCNNGA 4 cut(s) 370, 647, 910, 974
Hpy8I GTNNAC 4 cut(s) 67, 246, 354, 921
Hpy99I CGWCG 4 cut(s) 62, 65, 224, 436
HpyAV CCTTC 4 cut(s) 127, 414, 512, 631
HpyCH4III ACNGT 3 cut(s) 295, 512, 663
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 1 cut(s) 824
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 390
HpyF3I CTNAG 8 cut(s) 6, 170, 261, 272, 282, 348, 359, 975
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 2 cut(s) 434, 933
Hsp92II CATG 4 cut(s) 76, 337, 797, 828
HspAI GCGC 1 cut(s) 791
KspAI GTTAAC 1 cut(s) 246
Kzo9I GATC 3 cut(s) 19, 463, 741
LmnI GCTCC 6 cut(s) 39, 203, 372, 521, 579, 685
Lsp1109I GCAGC 6 cut(s) 228, 331, 536, 664, 742, 745
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 5 cut(s) 9, 342, 536, 663, 998
MalI GATC 3 cut(s) 21, 465, 743
MbiI CCGCTC 1 cut(s) 363
MboI GATC 3 cut(s) 19, 463, 741
MboII GAAGA 7 cut(s) 29, 399, 514, 587, 795, 827, 928
MflI RGATCY 3 cut(s) 19, 463, 741
MhlI GDGCHC 4 cut(s) 176, 200, 572, 584
MluCI AATT 1 cut(s) 1080
MlyI GAGTC 6 cut(s) 140, 194, 274, 349, 652, 926
MmeI TCCRAC 3 cut(s) 183, 452, 981
Mph1103I ATGCAT 1 cut(s) 826
MseI TTAA 2 cut(s) 245, 705
MslI CAYNNNNRTG 1 cut(s) 767
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
MspR9I CCNGG 6 cut(s) 241, 257, 340, 395, 413, 460
MvaI CCWGG 3 cut(s) 257, 413, 460
MwoI GCNNNNNNNGC 2 cut(s) 381, 390
NciI CCSGG 3 cut(s) 241, 340, 395
NdeII GATC 3 cut(s) 19, 463, 741
NlaIII CATG 4 cut(s) 76, 337, 797, 828
NlaIV GGNNCC 9 cut(s) 35, 88, 157, 199, 402, 417, 570, 581, 928
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 3 cut(s) 9, 342, 663
NsbI TGCGCA 1 cut(s) 792
NsiI ATGCAT 1 cut(s) 826
PcsI WCGNNNNNNNCGW 1 cut(s) 877
PfeI GAWTC 1 cut(s) 366
Pfl23II CGTACG 1 cut(s) 135
PflMI CCANNNNNTGG 1 cut(s) 30
PleI GAGTC 6 cut(s) 140, 193, 274, 349, 651, 925
PpsI GAGTC 6 cut(s) 140, 193, 274, 349, 651, 925
PpuMI RGGWCCY 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 3 cut(s) 255, 411, 458
PspEI GGTNACC 2 cut(s) 342, 998
PspFI CCCAGC 3 cut(s) 23, 89, 299
PspGI CCWGG 3 cut(s) 255, 411, 458
PspLI CGTACG 1 cut(s) 135
PspN4I GGNNCC 9 cut(s) 35, 88, 157, 199, 402, 417, 570, 581, 928
PspOMI GGGCCC 1 cut(s) 568
PspPI GGNCC 5 cut(s) 86, 166, 401, 568, 569
PspPPI RGGWCCY 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 3 cut(s) 19, 463, 741
RsaI GTAC 3 cut(s) 137, 657, 1043
RsaNI GTAC 3 cut(s) 136, 656, 1042
RseI CAYNNNNRTG 1 cut(s) 767
SacI GAGCTC 1 cut(s) 176
SalI GTCGAC 1 cut(s) 352
SaqAI TTAA 2 cut(s) 245, 705
Sau3AI GATC 3 cut(s) 19, 463, 741
Sau96I GGNCC 5 cut(s) 86, 166, 401, 568, 569
ScaI AGTACT 1 cut(s) 657
SchI GAGTC 6 cut(s) 140, 194, 274, 349, 652, 926
ScrFI CCNGG 6 cut(s) 241, 257, 340, 395, 413, 460
SduI GDGCHC 4 cut(s) 176, 200, 572, 584
SfcI CTRYAG 1 cut(s) 659
SgrAI CRCCGGYG 2 cut(s) 178, 929
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 767
Sse9I AATT 1 cut(s) 1080
SsiI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 176
StyD4I CCNGG 6 cut(s) 239, 255, 338, 393, 411, 458
StyI CCWWGG 1 cut(s) 683
TaaI ACNGT 3 cut(s) 295, 512, 663
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 144, 353
TasI AATT 1 cut(s) 1080
TatI WGTACW 1 cut(s) 655
TauI GCSGC 4 cut(s) 110, 255, 479, 482
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 2 cut(s) 245, 705
Tru9I TTAA 2 cut(s) 245, 705
TscAI CASTG 3 cut(s) 517, 702, 1014
TseFI GTSAC 3 cut(s) 9, 342, 663
TseI GCWGC 6 cut(s) 216, 319, 524, 677, 730, 733
Tsp45I GTSAC 3 cut(s) 9, 342, 663
TspDTI ATGAA 3 cut(s) 327, 521, 789
TspGWI ACGGA 4 cut(s) 123, 224, 402, 579
TspRI CASTG 3 cut(s) 517, 702, 1014
Van91I CCANNNNNTGG 1 cut(s) 30
VpaK11BI GGWCC 1 cut(s) 401
XapI RAATTY 1 cut(s) 1080
XmiI GTMKAC 2 cut(s) 353, 920
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 657
Zsp2I ATGCAT 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.