Prupe.2G243200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0011808
Physical Location & Seq
Forward (+)
26180128 .. 26182520
2393 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G243200.1

Sequence Viewer

Length: 1245 bp
ATGGCTGAGTCACGGGACGATCCCGAGTTCTATCTCCCAACCCACTTCCTAACAGACGACGTCGTTCTGCACAACATGGACGACAACAGCTTCCACCAAAACGGCGTCGGATCAGTCGCCCGGTTCCCCACCGAGTTCCCGTACGAGTTCGATTCCTCCGACTCTAACTCAGCCCTCAGCTCGCCTGTCGAGTCCGTGGTCGGCTCCACTGAGACTGAGAGCAGCGACGAAGAGGACTTCCTCTCCGGGTTGACTCGCCGCCTCGCTCAGTCTTCGCTGCAGCAGACTCACCAGACTCAAAAGCTATCTGTCCCCAACTTCAACAAAGACAAGCCCGAGTGGGTCATGGCCGGCTCGCCTCAGTCCATTTTGAGCGGAATCGGGAGCTGGTCAAGCAACGGAAGCCCGACAGGCCCTTCTTCCCAGGTGCCATCCCCACCAACGACGCCGTTTGGAGCTCAGAACGACACCTGGGATCTGATATACGCAGCTGCTGGGCAAGTTGCGAGGTTGAAGATGACCAATGGTGTTGAAGGAGCAACCAAATTCAGCAACCATAGCCGAGGACTTCTGGGCCCACCTCGGAGCCCCAGTCCGTCGTCCCTGCCTTGTGTGAAAAACCCAGCTCCTGGGCTGTGCTCTAACCAGAGCTTCAATCAGCCTCAGCATGTGAGGCAGAACCAGGTGCTCAACAAGCCACAGTGCTCTGCAGCTTGGGGAAAACAAGGCCAGCTTCCCTGGTCAGCATATCAGCAACAGCAGCAACAGATCCAAAGCAGAGGGAGAAGTATTCCTGGGTATGAGAGTGGTCGATGTGGGCATGGTGTGAGTATACCCCAATCTGCATGGCCGCCTCTGCAAGTTCAACAACACCAAAATCAACATCCACAGCGTAACAATGCATCCGTGCGCCCCATTTTGCCCAACGGATCTAATATCAAACGGGAGTGTGCAGGAACAGGTGTGTTCTTGCCTCGTAGATACAGCAACCCTGCTCCTGAGCCTCGCAAGAAAGCAGGTTGCCCAACTGTTCTGCTTCCAGCCAAGGTAGTTCAGGCCCTCAACTTGAACTTTGAGGACATGAACAGTCAAGCTCCGCCGCGTTTCAACTCCGGTTTAGCCCCAGACCATGAGGCTCTGTTGGCCAGAAGAAATGCACTGTTGGCTCAGCAAAGGCTTGGGGGATTAAGGCCAGAGGGGCCACTGAATTATGAAGTGCGCCTGCCTCAGGAGTGGACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

45.24

Weight (kDa)

7.69

Isoelectric Point (pI)

62.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
Acc36I ACCTGC 1 cut(s) 1007
AccB1I GGYRCC 1 cut(s) 427
AccB7I CCANNNNNTGG 1 cut(s) 629
AccBSI CCGCTC 1 cut(s) 375
AccI GTMKAC 1 cut(s) 832
AccII CGCG 1 cut(s) 1102
AciI CCGC 5 cut(s) 259, 375, 851, 1097, 1100
AclWI GGATC 5 cut(s) 14, 118, 483, 763, 937
AcoI YGGCCR 3 cut(s) 348, 848, 1143
AcsI RAATTY 1 cut(s) 545
AcyI GRCGYC 3 cut(s) 60, 105, 446
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 629, 1228
AgsI TTSAA 7 cut(s) 322, 514, 533, 655, 866, 1069, 1108
AjnI CCWGG 6 cut(s) 423, 470, 628, 681, 737, 793
Alw21I GWGCWC 4 cut(s) 460, 641, 690, 707
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 5 cut(s) 14, 118, 483, 763, 937
AlwNI CAGNNNCTG 2 cut(s) 494, 629
Ama87I CYCGRG 2 cut(s) 23, 335
AoxI GGCC 9 cut(s) 348, 412, 574, 727, 848, 1056, 1143, 1190, 1199
ApaI GGGCCC 1 cut(s) 578
ApeKI GCWGC 7 cut(s) 222, 277, 280, 488, 491, 710, 760
ApoI RAATTY 1 cut(s) 545
AspLEI GCGC 2 cut(s) 912, 1221
AspS9I GGNCC 6 cut(s) 413, 574, 575, 1057, 1199, 1236
AsuC2I CCSGG 2 cut(s) 121, 247
AsuHPI GGTGA 1 cut(s) 281
AvaI CYCGRG 2 cut(s) 23, 335
AvaII GGWCC 1 cut(s) 1236
AxyI CCTNAGG 1 cut(s) 1227
BaeGI GKGCMC 1 cut(s) 578
BalI TGGCCA 1 cut(s) 1145
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 3 cut(s) 460, 578, 590
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 4 cut(s) 460, 641, 690, 707
BbvCI CCTCAGC 2 cut(s) 176, 663
BbvI GCAGC 7 cut(s) 234, 264, 292, 478, 500, 722, 772
BccI CCATC 1 cut(s) 439
BceAI ACGGC 2 cut(s) 118, 433
BciT130I CCWGG 6 cut(s) 425, 472, 630, 683, 739, 795
BcnI CCSGG 2 cut(s) 121, 247
BcoDI GTCTC 1 cut(s) 206
BfmI CTRYAG 2 cut(s) 278, 708
BfuAI ACCTGC 1 cut(s) 1007
BglI GCCNNNNNGGC 2 cut(s) 411, 1198
BlpI GCTNAGC 1 cut(s) 1167
Bme1390I CCNGG 8 cut(s) 121, 247, 425, 472, 630, 683, 739, 795
Bme18I GGWCC 1 cut(s) 1236
BmeT110I CYCGRG 2 cut(s) 23, 335
BmgT120I GGNCC 6 cut(s) 413, 574, 575, 1057, 1199, 1236
BmiI GGNNCC 6 cut(s) 125, 205, 429, 576, 587, 1200
BmrFI CCNGG 8 cut(s) 121, 247, 425, 472, 630, 683, 739, 795
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 911
BmuI ACTGGG 1 cut(s) 585
BpiI GAAGAC 1 cut(s) 264
Bpu10I CCTNAGC 3 cut(s) 176, 663, 999
Bpu1102I GCTNAGC 1 cut(s) 1167
BpuMI CCSGG 2 cut(s) 121, 247
BsaHI GRCGYC 3 cut(s) 60, 105, 446
BsaJI CCNNGG 9 cut(s) 195, 423, 471, 562, 581, 629, 737, 794, 1044
BsaWI WCCGGW 1 cut(s) 1112
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 577, 607
Bsc4I CCNNNNNNNGG 2 cut(s) 629, 1228
Bse118I RCCGGY 1 cut(s) 350
Bse1I ACTGG 1 cut(s) 591
Bse21I CCTNAGG 1 cut(s) 1227
BseBI CCWGG 6 cut(s) 425, 472, 630, 683, 739, 795
BseDI CCNNGG 9 cut(s) 195, 423, 471, 562, 581, 629, 737, 794, 1044
BseGI GGATG 3 cut(s) 431, 883, 902
BseLI CCNNNNNNNGG 2 cut(s) 629, 1228
BseNI ACTGG 1 cut(s) 591
BseSI GKGCMC 1 cut(s) 578
BseXI GCAGC 7 cut(s) 234, 264, 292, 478, 500, 722, 772
BseYI CCCAGC 2 cut(s) 494, 622
BsgI GTGCAG 2 cut(s) 53, 972
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 9 cut(s) 350, 414, 576, 729, 850, 1058, 1145, 1192, 1201
BshNI GGYRCC 1 cut(s) 427
BsiHKAI GWGCWC 4 cut(s) 460, 641, 690, 707
BsiHKCI CYCGRG 2 cut(s) 23, 335
BsiSI CCGG 4 cut(s) 121, 246, 351, 1113
BsiWI CGTACG 1 cut(s) 141
BslFI GGGAC 3 cut(s) 29, 296, 586
BslI CCNNNNNNNGG 2 cut(s) 629, 1228
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 3 cut(s) 29, 296, 586
BsnI GGCC 9 cut(s) 350, 414, 576, 729, 850, 1058, 1145, 1192, 1201
BsoBI CYCGRG 2 cut(s) 23, 335
Bsp120I GGGCCC 1 cut(s) 574
Bsp1286I GDGCHC 6 cut(s) 460, 578, 590, 641, 690, 707
Bsp143I GATC 5 cut(s) 19, 110, 475, 768, 929
Bsp1720I GCTNAGC 1 cut(s) 1167
BspACI CCGC 5 cut(s) 259, 375, 851, 1097, 1100
BspANI GGCC 9 cut(s) 350, 414, 576, 729, 850, 1058, 1145, 1192, 1201
BspFNI CGCG 1 cut(s) 1102
BspLI GGNNCC 6 cut(s) 125, 205, 429, 576, 587, 1200
BspMAI CTGCAG 2 cut(s) 282, 712
BspMI ACCTGC 1 cut(s) 1007
BspPI GGATC 5 cut(s) 14, 118, 483, 763, 937
BspT107I GGYRCC 1 cut(s) 427
BsrBI CCGCTC 1 cut(s) 375
BsrFI RCCGGY 1 cut(s) 350
BsrI ACTGG 1 cut(s) 591
BssAI RCCGGY 1 cut(s) 350
BssECI CCNNGG 9 cut(s) 195, 423, 471, 562, 581, 629, 737, 794, 1044
BssMI GATC 5 cut(s) 19, 110, 475, 768, 929
BssNAI GTATAC 1 cut(s) 833
BssNI GRCGYC 3 cut(s) 60, 105, 446
BssT1I CCWWGG 1 cut(s) 1044
Bst1107I GTATAC 1 cut(s) 833
Bst2UI CCWGG 6 cut(s) 425, 472, 630, 683, 739, 795
Bst4CI ACNGT 4 cut(s) 702, 1030, 1088, 1161
Bst6I CTCTTC 1 cut(s) 225
BstACI GRCGYC 3 cut(s) 60, 105, 446
BstC8I GCNNGC 5 cut(s) 182, 352, 356, 731, 1223
BstDSI CCRYGG 1 cut(s) 195
BstENI CCTNNNNNAGG 1 cut(s) 1226
BstF5I GGATG 3 cut(s) 431, 883, 902
BstFNI CGCG 1 cut(s) 1102
BstHHI GCGC 2 cut(s) 912, 1221
BstKTI GATC 5 cut(s) 22, 113, 478, 771, 932
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 5 cut(s) 19, 110, 475, 768, 929
BstNI CCWGG 6 cut(s) 425, 472, 630, 683, 739, 795
BstNSI RCATGY 1 cut(s) 671
BstSCI CCNGG 8 cut(s) 119, 245, 423, 470, 628, 681, 737, 793
BstSFI CTRYAG 2 cut(s) 278, 708
BstSLI GKGCMC 1 cut(s) 578
BstUI CGCG 1 cut(s) 1102
BstV1I GCAGC 7 cut(s) 234, 264, 292, 478, 500, 722, 772
BstV2I GAAGAC 1 cut(s) 264
BstX2I RGATCY 3 cut(s) 475, 768, 929
BstYI RGATCY 3 cut(s) 475, 768, 929
BstZ17I GTATAC 1 cut(s) 833
Bsu36I CCTNAGG 1 cut(s) 1227
BsuRI GGCC 9 cut(s) 350, 414, 576, 729, 850, 1058, 1145, 1192, 1201
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 3 cut(s) 431, 883, 902
BtsIMutI CAGTG 4 cut(s) 207, 707, 1157, 1202
BveI ACCTGC 1 cut(s) 1007
Cac8I GCNNGC 5 cut(s) 182, 352, 356, 731, 1223
CaiI CAGNNNCTG 2 cut(s) 494, 629
CfoI GCGC 2 cut(s) 912, 1221
Cfr10I RCCGGY 1 cut(s) 350
Cfr13I GGNCC 6 cut(s) 413, 574, 575, 1057, 1199, 1236
CseI GACGC 2 cut(s) 94, 454
CsiI ACCWGGT 1 cut(s) 681
Csp6I GTAC 1 cut(s) 142
CviAII CATG 7 cut(s) 76, 346, 668, 821, 846, 1081, 1130
CviQI GTAC 1 cut(s) 142
DpnI GATC 5 cut(s) 21, 112, 477, 770, 931
DpnII GATC 5 cut(s) 19, 110, 475, 768, 929
EaeI YGGCCR 3 cut(s) 348, 848, 1143
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 1086
Ecl136II GAGCTC 1 cut(s) 458
Eco130I CCWWGG 1 cut(s) 1044
Eco24I GRGCYC 3 cut(s) 460, 578, 590
Eco47I GGWCC 1 cut(s) 1236
Eco53kI GAGCTC 1 cut(s) 458
Eco81I CCTNAGG 1 cut(s) 1227
Eco88I CYCGRG 2 cut(s) 23, 335
EcoICRI GAGCTC 1 cut(s) 458
EcoNI CCTNNNNNAGG 1 cut(s) 1226
EcoO109I RGGNCCY 2 cut(s) 413, 1057
EcoRII CCWGG 6 cut(s) 423, 470, 628, 681, 737, 793
EcoT14I CCWWGG 1 cut(s) 1044
EcoT22I ATGCAT 1 cut(s) 904
EcoT38I GRGCYC 3 cut(s) 460, 578, 590
ErhI CCWWGG 1 cut(s) 1044
FaeI CATG 7 cut(s) 79, 349, 671, 824, 849, 1084, 1133
FalI AAGNNNNNCTT 2 cut(s) 717, 749
FaqI GGGAC 3 cut(s) 29, 296, 586
FatI CATG 7 cut(s) 75, 345, 667, 820, 845, 1080, 1129
FblI GTMKAC 1 cut(s) 832
FokI GGATG 3 cut(s) 418, 870, 889
FriOI GRGCYC 3 cut(s) 460, 578, 590
GlaI GCGC 2 cut(s) 911, 1220
GsaI CCCAGC 2 cut(s) 498, 626
HaeIII GGCC 9 cut(s) 350, 414, 576, 729, 850, 1058, 1145, 1192, 1201
HapII CCGG 4 cut(s) 121, 246, 351, 1113
HgaI GACGC 2 cut(s) 94, 454
HhaI GCGC 2 cut(s) 912, 1221
Hin1I GRCGYC 3 cut(s) 60, 105, 446
Hin1II CATG 7 cut(s) 79, 349, 671, 824, 849, 1084, 1133
Hin6I GCGC 2 cut(s) 910, 1219
HinP1I GCGC 2 cut(s) 910, 1219
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 8 cut(s) 8, 152, 161, 191, 253, 286, 295, 378
HpaII CCGG 4 cut(s) 121, 246, 351, 1113
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 3 cut(s) 252, 833, 1236
Hpy188I TCNGA 5 cut(s) 110, 160, 462, 480, 585
Hpy188III TCNNGA 4 cut(s) 23, 382, 998, 1229
Hpy8I GTNNAC 3 cut(s) 252, 833, 1236
Hpy99I CGWCG 6 cut(s) 62, 65, 110, 230, 448, 601
HpyAV CCTTC 2 cut(s) 426, 527
HpyCH4III ACNGT 4 cut(s) 702, 1030, 1088, 1161
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 8 cut(s) 70, 280, 710, 845, 859, 902, 953, 1157
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 3 cut(s) 60, 105, 446
Hsp92II CATG 7 cut(s) 79, 349, 671, 824, 849, 1084, 1133
HspAI GCGC 2 cut(s) 910, 1219
KroI GCCGGC 1 cut(s) 350
KroNI GCCGGC 1 cut(s) 352
Kzo9I GATC 5 cut(s) 19, 110, 475, 768, 929
LmnI GCTCC 8 cut(s) 209, 384, 455, 536, 585, 631, 1000, 1099
Lsp1109I GCAGC 7 cut(s) 234, 264, 292, 478, 500, 722, 772
LweI GCATC 1 cut(s) 911
MabI ACCWGGT 1 cut(s) 681
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 9, 893
MalI GATC 5 cut(s) 21, 112, 477, 770, 931
MbiI CCGCTC 1 cut(s) 375
MboI GATC 5 cut(s) 19, 110, 475, 768, 929
MboII GAAGA 5 cut(s) 242, 264, 411, 526, 1161
MflI RGATCY 3 cut(s) 475, 768, 929
MhlI GDGCHC 6 cut(s) 460, 578, 590, 641, 690, 707
MlsI TGGCCA 1 cut(s) 1145
MluCI AATT 2 cut(s) 545, 1207
MluNI TGGCCA 1 cut(s) 1145
MlyI GAGTC 6 cut(s) 17, 155, 200, 247, 280, 289
MmeI TCCRAC 2 cut(s) 88, 183
Mox20I TGGCCA 1 cut(s) 1145
Mph1103I ATGCAT 1 cut(s) 904
MroNI GCCGGC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 1145
MseI TTAA 1 cut(s) 1187
Msp20I TGGCCA 1 cut(s) 1145
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 4 cut(s) 121, 246, 351, 1113
MspR9I CCNGG 8 cut(s) 121, 247, 425, 472, 630, 683, 739, 795
MvaI CCWGG 6 cut(s) 425, 472, 630, 683, 739, 795
MvnI CGCG 1 cut(s) 1102
NaeI GCCGGC 1 cut(s) 352
NciI CCSGG 2 cut(s) 121, 247
NdeII GATC 5 cut(s) 19, 110, 475, 768, 929
NgoMIV GCCGGC 1 cut(s) 350
NlaIII CATG 7 cut(s) 79, 349, 671, 824, 849, 1084, 1133
NlaIV GGNNCC 6 cut(s) 125, 205, 429, 576, 587, 1200
NmeAIII GCCGAG 1 cut(s) 587
NmuCI GTSAC 1 cut(s) 9
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 1 cut(s) 671
PcsI WCGNNNNNNNCGW 1 cut(s) 156
PdiI GCCGGC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 152, 378
Pfl23II CGTACG 1 cut(s) 141
PflFI GACNNNGTC 1 cut(s) 59
PflMI CCANNNNNTGG 1 cut(s) 629
PleI GAGTC 6 cut(s) 16, 155, 199, 247, 280, 289
PpsI GAGTC 6 cut(s) 16, 155, 199, 247, 280, 289
Psp124BI GAGCTC 1 cut(s) 460
Psp6I CCWGG 6 cut(s) 423, 470, 628, 681, 737, 793
PspFI CCCAGC 2 cut(s) 494, 622
PspGI CCWGG 6 cut(s) 423, 470, 628, 681, 737, 793
PspLI CGTACG 1 cut(s) 141
PspN4I GGNNCC 6 cut(s) 125, 205, 429, 576, 587, 1200
PspOMI GGGCCC 1 cut(s) 574
PspPI GGNCC 6 cut(s) 413, 574, 575, 1057, 1199, 1236
PstI CTGCAG 2 cut(s) 282, 712
PstNI CAGNNNCTG 2 cut(s) 494, 629
PsuI RGATCY 3 cut(s) 475, 768, 929
PsyI GACNNNGTC 1 cut(s) 59
PvuII CAGCTG 1 cut(s) 491
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SacI GAGCTC 1 cut(s) 460
SaqAI TTAA 1 cut(s) 1187
Sau3AI GATC 5 cut(s) 19, 110, 475, 768, 929
Sau96I GGNCC 6 cut(s) 413, 574, 575, 1057, 1199, 1236
SchI GAGTC 6 cut(s) 17, 155, 200, 247, 280, 289
ScrFI CCNGG 8 cut(s) 121, 247, 425, 472, 630, 683, 739, 795
SduI GDGCHC 6 cut(s) 460, 578, 590, 641, 690, 707
SexAI ACCWGGT 1 cut(s) 681
SfaNI GCATC 1 cut(s) 911
SfcI CTRYAG 2 cut(s) 278, 708
SfiI GGCCNNNNNGGCC 1 cut(s) 1198
SinI GGWCC 1 cut(s) 1236
Sse9I AATT 2 cut(s) 545, 1207
SsiI CCGC 5 cut(s) 259, 375, 851, 1097, 1100
SstI GAGCTC 1 cut(s) 460
StyD4I CCNGG 8 cut(s) 119, 245, 423, 470, 628, 681, 737, 793
StyI CCWWGG 1 cut(s) 1044
TaaI ACNGT 4 cut(s) 702, 1030, 1088, 1161
TaiI ACGT 1 cut(s) 63
TaqI TCGA 3 cut(s) 150, 189, 811
TasI AATT 2 cut(s) 545, 1207
TauI GCSGC 3 cut(s) 261, 853, 1102
TfiI GAWTC 2 cut(s) 152, 378
Tru1I TTAA 1 cut(s) 1187
Tru9I TTAA 1 cut(s) 1187
TscAI CASTG 4 cut(s) 214, 707, 1164, 1209
TseFI GTSAC 1 cut(s) 9
TseI GCWGC 7 cut(s) 222, 277, 280, 488, 491, 710, 760
Tsp45I GTSAC 1 cut(s) 9
TspDTI ATGAA 2 cut(s) 1097, 1227
TspGWI ACGGA 5 cut(s) 184, 414, 585, 895, 942
TspRI CASTG 4 cut(s) 214, 707, 1164, 1209
Tth111I GACNNNGTC 1 cut(s) 59
Van91I CCANNNNNTGG 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 1236
XagI CCTNNNNNAGG 1 cut(s) 1226
XapI RAATTY 1 cut(s) 545
XceI RCATGY 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 832
ZraI GACGTC 1 cut(s) 61
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.