Rh1CG330900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0011808
Physical Location & Seq
Forward (+)
60488885 .. 60500482
11598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG330900.1

Sequence Viewer

Length: 1194 bp
ATGGCTAAGTCACCGGAAGATCCCAGCTTCTGGCTCCCCTCTGATTTCCTTGCCAACGACGACGTTCACCTCATGGACAACAAAGGCCCCAGCTTCCGCAGAACCGCCGCTGTCTCCTTCCCCACCGAGTTTCCGTACGAGTTCGACTCGTCCGGTTCCAACTCGGCCCTGAGCTCGCCGGTGGAGTCCGATGTGGGCTCCACCGAGACGGAGAGCAGCGACGAGGAGGACTTCCTCGCCGGGTTAACTCGCCGCCTGGCTCAGTCCTCGCTCAGCCAGACTCAGAAGCTCACCGTCCCCAGCTTCACTAATGAAAAGCAGCCCGAGTGGGTCATGTCCGGGTCACCTCAGTCGACTCTGAGCGGAATCGGGAGCTGGTCTAGCAACGGAAGCCCGGCGGGTCCTTCTTCCCAGGTGCCGTCTCCTCCAACGACGCCGTTTGGGGGTCAAAACGACACCTGGGATCTGATTTACGCCGCCGCCGGACAAGTGGCGAGGTTGAAGATGAACAGTGTTGAAGGAGCAGCCAAGTTCAGTAACAACAACAGCAACGGCAGAGGGCTTCTGGGCCCACCTCGGAGCCCAAGTCCGTCTCTTCCTTGCGTCCAAAACCAAAGCCCCTTCACCCAGTTTCAGCAAGTGAGTCAAGACCAAGTACTACAGTCACAATGCTCTGCTGCTCCTTGGGGAAAACCAGTGAAGCTTAACTGGTCAGCTCATCAACACCAGCAGCAGCAACAGATCCAAAACAGAGGAAAAAACATTGGTGTGTATGAAAGTGGAAGATGTGCGCATGGTGTGTGTTTGCCCCAATCTCAAAATGCATGGCCTCCTCTTCAAGCTCAACACCAAAACCAACAACACCCACATCGCAATACCCGACCCGTTTTGCCTAATGGGTCTAATGTCAAGAGGGAGTCTACCGGCACCGGCGTCTTCTTGCCTCGCAGATACTCCAACCCCAATGCCACTCCTGAGCCACCTCGCAAAAGAGCAGGTTGCCCTACTGTTTTGCTCCCAGCCAAGGTGGTTCAAGCTCTGAACTTGAGCTTTGAGGACATGAATGGTCATCATCAGCAACACCATCTTCAGCCACGGTTCAACAACACTGCTTTGGCTCCAAACCATGGTAATGCATTAGCTTTCCATATATGGAACTATTTTTGTTGCAGCAGATCTATTAGAGTATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

43.42

Weight (kDa)

8.46

Isoelectric Point (pI)

65.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 792
Acc36I ACCTGC 1 cut(s) 986
AccB1I GGYRCC 2 cut(s) 415, 926
AccB7I CCANNNNNTGG 2 cut(s) 30, 1127
AccBSI CCGCTC 1 cut(s) 363
AccI GTMKAC 2 cut(s) 353, 920
AciI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
AclWI GGATC 3 cut(s) 14, 471, 736
AcuI CTGAAG 1 cut(s) 1073
AcyI GRCGYC 2 cut(s) 434, 933
AfaI GTAC 2 cut(s) 137, 657
AfiI CCNNNNNNNGG 4 cut(s) 30, 443, 1024, 1127
AgsI TTSAA 5 cut(s) 502, 518, 839, 1034, 1102
AjnI CCWGG 3 cut(s) 255, 411, 458
Alw21I GWGCWC 1 cut(s) 176
Alw26I GTCTC 4 cut(s) 118, 200, 426, 597
AlwI GGATC 3 cut(s) 14, 471, 736
AlwNI CAGNNNCTG 1 cut(s) 30
Ama87I CYCGRG 1 cut(s) 323
AoxI GGCC 4 cut(s) 85, 165, 568, 827
ApaI GGGCCC 1 cut(s) 572
ApeKI GCWGC 7 cut(s) 216, 319, 524, 677, 730, 733, 1170
AspLEI GCGC 1 cut(s) 793
AspS9I GGNCC 5 cut(s) 86, 166, 401, 568, 569
AsuC2I CCSGG 3 cut(s) 241, 340, 395
AsuHPI GGTGA 5 cut(s) 3, 59, 283, 336, 616
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 401
BaeGI GKGCMC 1 cut(s) 572
BanI GGYRCC 2 cut(s) 415, 926
BanII GRGCYC 4 cut(s) 176, 200, 572, 584
BbsI GAAGAC 1 cut(s) 928
Bbv12I GWGCWC 1 cut(s) 176
BbvI GCAGC 7 cut(s) 228, 331, 536, 664, 742, 745, 1182
BccI CCATC 1 cut(s) 1092
BceAI ACGGC 3 cut(s) 403, 421, 568
BciT130I CCWGG 3 cut(s) 257, 413, 460
BcnI CCSGG 3 cut(s) 241, 340, 395
BcoDI GTCTC 4 cut(s) 118, 200, 426, 597
BfaI CTAG 1 cut(s) 381
BfmI CTRYAG 1 cut(s) 659
BfuAI ACCTGC 1 cut(s) 986
BglII AGATCT 1 cut(s) 1175
BlpI GCTNAGC 1 cut(s) 272
BmcAI AGTACT 1 cut(s) 657
Bme1390I CCNGG 6 cut(s) 241, 257, 340, 395, 413, 460
Bme18I GGWCC 1 cut(s) 401
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 5 cut(s) 86, 166, 401, 568, 569
BmrFI CCNGG 6 cut(s) 241, 257, 340, 395, 413, 460
BmrI ACTGGG 1 cut(s) 622
BmuI ACTGGG 1 cut(s) 622
BpiI GAAGAC 1 cut(s) 928
BplI GAGNNNNNCTC 2 cut(s) 131, 163
Bpu10I CCTNAGC 2 cut(s) 170, 975
Bpu1102I GCTNAGC 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 1066
BpuMI CCSGG 3 cut(s) 241, 340, 395
BsaHI GRCGYC 2 cut(s) 434, 933
BsaJI CCNNGG 7 cut(s) 411, 459, 575, 683, 1023, 1094, 1126
BsaWI WCCGGW 2 cut(s) 13, 152
BsaXI ACNNNNNCTCC 2 cut(s) 571, 601
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 443, 1024, 1127
Bse118I RCCGGY 3 cut(s) 178, 923, 929
Bse1I ACTGG 3 cut(s) 628, 695, 713
BseBI CCWGG 3 cut(s) 257, 413, 460
BseDI CCNNGG 7 cut(s) 411, 459, 575, 683, 1023, 1094, 1126
BseLI CCNNNNNNNGG 4 cut(s) 30, 443, 1024, 1127
BseMII CTCAG 7 cut(s) 161, 275, 286, 296, 350, 362, 966
BseNI ACTGG 3 cut(s) 628, 695, 713
BseRI GAGGAG 3 cut(s) 239, 414, 822
BseSI GKGCMC 1 cut(s) 572
BseXI GCAGC 7 cut(s) 228, 331, 536, 664, 742, 745, 1182
BseYI CCCAGC 4 cut(s) 23, 89, 299, 1018
BshFI GGCC 4 cut(s) 87, 167, 570, 829
BshNI GGYRCC 2 cut(s) 415, 926
BsiHKAI GWGCWC 1 cut(s) 176
BsiHKCI CYCGRG 1 cut(s) 323
BsiSI CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
BsiWI CGTACG 1 cut(s) 135
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 4 cut(s) 30, 443, 1024, 1127
BsmAI GTCTC 4 cut(s) 118, 200, 426, 597
BsmBI CGTCTC 3 cut(s) 200, 426, 597
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 4 cut(s) 87, 167, 570, 829
BsoBI CYCGRG 1 cut(s) 323
Bsp120I GGGCCC 1 cut(s) 568
Bsp1286I GDGCHC 4 cut(s) 176, 200, 572, 584
Bsp143I GATC 4 cut(s) 19, 463, 741, 1175
Bsp1720I GCTNAGC 1 cut(s) 272
Bsp19I CCATGG 1 cut(s) 1126
BspACI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
BspANI GGCC 4 cut(s) 87, 167, 570, 829
BspCNI CTCAG 7 cut(s) 162, 274, 285, 295, 351, 361, 967
BspMI ACCTGC 1 cut(s) 986
BspPI GGATC 3 cut(s) 14, 471, 736
BspT107I GGYRCC 2 cut(s) 415, 926
BsrBI CCGCTC 1 cut(s) 363
BsrFI RCCGGY 3 cut(s) 178, 923, 929
BsrI ACTGG 3 cut(s) 628, 695, 713
BssAI RCCGGY 3 cut(s) 178, 923, 929
BssECI CCNNGG 7 cut(s) 411, 459, 575, 683, 1023, 1094, 1126
BssMI GATC 4 cut(s) 19, 463, 741, 1175
BssNI GRCGYC 2 cut(s) 434, 933
BssT1I CCWWGG 3 cut(s) 683, 1023, 1126
Bst2UI CCWGG 3 cut(s) 257, 413, 460
Bst4CI ACNGT 5 cut(s) 295, 512, 663, 1009, 1098
Bst6I CTCTTC 2 cut(s) 600, 840
BstACI GRCGYC 2 cut(s) 434, 933
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 8 cut(s) 6, 170, 261, 272, 282, 348, 359, 975
BstDSI CCRYGG 2 cut(s) 1094, 1126
BstEII GGTNACC 1 cut(s) 342
BstHHI GCGC 1 cut(s) 793
BstKTI GATC 4 cut(s) 22, 466, 744, 1178
BstMAI GTCTC 4 cut(s) 118, 200, 426, 597
BstMBI GATC 4 cut(s) 19, 463, 741, 1175
BstMWI GCNNNNNNNGC 2 cut(s) 381, 390
BstNI CCWGG 3 cut(s) 257, 413, 460
BstPI GGTNACC 1 cut(s) 342
BstSCI CCNGG 6 cut(s) 239, 255, 338, 393, 411, 458
BstSFI CTRYAG 1 cut(s) 659
BstSLI GKGCMC 1 cut(s) 572
BstV1I GCAGC 7 cut(s) 228, 331, 536, 664, 742, 745, 1182
BstV2I GAAGAC 1 cut(s) 928
BstX2I RGATCY 4 cut(s) 19, 463, 741, 1175
BstYI RGATCY 4 cut(s) 19, 463, 741, 1175
BsuRI GGCC 4 cut(s) 87, 167, 570, 829
BtgI CCRYGG 2 cut(s) 1094, 1126
BtgZI GCGATG 1 cut(s) 854
BtsI GCAGTG 1 cut(s) 1107
BtsIMutI CAGTG 3 cut(s) 517, 702, 1107
BveI ACCTGC 1 cut(s) 986
Cac8I GCNNGC 1 cut(s) 176
CaiI CAGNNNCTG 1 cut(s) 30
CfoI GCGC 1 cut(s) 793
Cfr10I RCCGGY 3 cut(s) 178, 923, 929
Cfr13I GGNCC 5 cut(s) 86, 166, 401, 568, 569
CseI GACGC 3 cut(s) 442, 592, 922
Csp6I GTAC 2 cut(s) 136, 656
CviAII CATG 6 cut(s) 73, 334, 794, 825, 1060, 1127
CviQI GTAC 2 cut(s) 136, 656
DdeI CTNAG 8 cut(s) 6, 170, 261, 272, 282, 348, 359, 975
DpnI GATC 4 cut(s) 21, 465, 743, 1177
DpnII GATC 4 cut(s) 19, 463, 741, 1175
Eam1104I CTCTTC 2 cut(s) 600, 840
EarI CTCTTC 2 cut(s) 600, 840
Ecl136II GAGCTC 1 cut(s) 174
Eco130I CCWWGG 3 cut(s) 683, 1023, 1126
Eco24I GRGCYC 4 cut(s) 176, 200, 572, 584
Eco47I GGWCC 1 cut(s) 401
Eco53kI GAGCTC 1 cut(s) 174
Eco57I CTGAAG 1 cut(s) 1073
Eco88I CYCGRG 1 cut(s) 323
Eco91I GGTNACC 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 174
EcoO109I RGGNCCY 2 cut(s) 86, 401
EcoO65I GGTNACC 1 cut(s) 342
EcoRII CCWGG 3 cut(s) 255, 411, 458
EcoT14I CCWWGG 3 cut(s) 683, 1023, 1126
EcoT22I ATGCAT 2 cut(s) 826, 1138
EcoT38I GRGCYC 4 cut(s) 176, 200, 572, 584
ErhI CCWWGG 3 cut(s) 683, 1023, 1126
Esp3I CGTCTC 3 cut(s) 200, 426, 597
FaeI CATG 6 cut(s) 76, 337, 797, 828, 1063, 1130
FaqI GGGAC 1 cut(s) 281
FatI CATG 6 cut(s) 72, 333, 793, 824, 1059, 1126
FauI CCCGC 1 cut(s) 391
FblI GTMKAC 2 cut(s) 353, 920
FriOI GRGCYC 4 cut(s) 176, 200, 572, 584
FspAI RTGCGCAY 1 cut(s) 792
FspBI CTAG 1 cut(s) 381
FspI TGCGCA 1 cut(s) 792
GlaI GCGC 1 cut(s) 792
GsaI CCCAGC 4 cut(s) 27, 93, 303, 1022
HaeIII GGCC 4 cut(s) 87, 167, 570, 829
HapII CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
HgaI GACGC 3 cut(s) 442, 592, 922
HhaI GCGC 1 cut(s) 793
Hin1I GRCGYC 2 cut(s) 434, 933
Hin1II CATG 6 cut(s) 76, 337, 797, 828, 1063, 1130
Hin6I GCGC 1 cut(s) 791
HinP1I GCGC 1 cut(s) 791
HincII GTYRAC 2 cut(s) 246, 354
HindII GTYRAC 2 cut(s) 246, 354
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 7 cut(s) 146, 185, 280, 355, 366, 643, 917
HpaI GTTAAC 1 cut(s) 246
HpaII CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
HphI GGTGA 5 cut(s) 3, 59, 283, 336, 616
Hpy166II GTNNAC 4 cut(s) 67, 246, 354, 921
Hpy188I TCNGA 7 cut(s) 43, 190, 285, 360, 468, 579, 1041
Hpy188III TCNNGA 4 cut(s) 370, 647, 910, 974
Hpy8I GTNNAC 4 cut(s) 67, 246, 354, 921
Hpy99I CGWCG 4 cut(s) 62, 65, 224, 436
HpyAV CCTTC 4 cut(s) 127, 414, 512, 631
HpyCH4III ACNGT 5 cut(s) 295, 512, 663, 1009, 1098
HpyCH4IV ACGT 1 cut(s) 63
HpyCH4V TGCA 3 cut(s) 824, 1136, 1170
HpyF10VI GCNNNNNNNGC 2 cut(s) 381, 390
HpyF3I CTNAG 8 cut(s) 6, 170, 261, 272, 282, 348, 359, 975
HpySE526I ACGT 1 cut(s) 63
Hsp92I GRCGYC 2 cut(s) 434, 933
Hsp92II CATG 6 cut(s) 76, 337, 797, 828, 1063, 1130
HspAI GCGC 1 cut(s) 791
KspAI GTTAAC 1 cut(s) 246
Kzo9I GATC 4 cut(s) 19, 463, 741, 1175
LmnI GCTCC 8 cut(s) 39, 203, 372, 521, 579, 685, 1020, 1123
Lsp1109I GCAGC 7 cut(s) 228, 331, 536, 664, 742, 745, 1182
MaeI CTAG 1 cut(s) 381
MaeII ACGT 1 cut(s) 63
MaeIII GTNAC 4 cut(s) 9, 342, 536, 663
MalI GATC 4 cut(s) 21, 465, 743, 1177
MbiI CCGCTC 1 cut(s) 363
MboI GATC 4 cut(s) 19, 463, 741, 1175
MboII GAAGA 8 cut(s) 29, 399, 514, 587, 795, 827, 928, 1079
MflI RGATCY 4 cut(s) 19, 463, 741, 1175
MhlI GDGCHC 4 cut(s) 176, 200, 572, 584
MlyI GAGTC 6 cut(s) 140, 194, 274, 349, 652, 926
MmeI TCCRAC 3 cut(s) 183, 452, 981
Mph1103I ATGCAT 2 cut(s) 826, 1138
MseI TTAA 2 cut(s) 245, 705
MslI CAYNNNNRTG 2 cut(s) 767, 1131
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 9 cut(s) 14, 153, 179, 240, 339, 395, 483, 924, 930
MspR9I CCNGG 6 cut(s) 241, 257, 340, 395, 413, 460
MvaI CCWGG 3 cut(s) 257, 413, 460
MwoI GCNNNNNNNGC 2 cut(s) 381, 390
NciI CCSGG 3 cut(s) 241, 340, 395
NcoI CCATGG 1 cut(s) 1126
NdeII GATC 4 cut(s) 19, 463, 741, 1175
NlaIII CATG 6 cut(s) 76, 337, 797, 828, 1063, 1130
NmeAIII GCCGAG 1 cut(s) 143
NmuCI GTSAC 3 cut(s) 9, 342, 663
NsbI TGCGCA 1 cut(s) 792
NsiI ATGCAT 2 cut(s) 826, 1138
PcsI WCGNNNNNNNCGW 1 cut(s) 877
PfeI GAWTC 1 cut(s) 366
Pfl23II CGTACG 1 cut(s) 135
PflMI CCANNNNNTGG 2 cut(s) 30, 1127
PleI GAGTC 6 cut(s) 140, 193, 274, 349, 651, 925
PpsI GAGTC 6 cut(s) 140, 193, 274, 349, 651, 925
PpuMI RGGWCCY 1 cut(s) 401
Psp124BI GAGCTC 1 cut(s) 176
Psp5II RGGWCCY 1 cut(s) 401
Psp6I CCWGG 3 cut(s) 255, 411, 458
PspEI GGTNACC 1 cut(s) 342
PspFI CCCAGC 4 cut(s) 23, 89, 299, 1018
PspGI CCWGG 3 cut(s) 255, 411, 458
PspLI CGTACG 1 cut(s) 135
PspOMI GGGCCC 1 cut(s) 568
PspPI GGNCC 5 cut(s) 86, 166, 401, 568, 569
PspPPI RGGWCCY 1 cut(s) 401
PstNI CAGNNNCTG 1 cut(s) 30
PsuI RGATCY 4 cut(s) 19, 463, 741, 1175
RsaI GTAC 2 cut(s) 137, 657
RsaNI GTAC 2 cut(s) 136, 656
RseI CAYNNNNRTG 2 cut(s) 767, 1131
SacI GAGCTC 1 cut(s) 176
SalI GTCGAC 1 cut(s) 352
SaqAI TTAA 2 cut(s) 245, 705
Sau3AI GATC 4 cut(s) 19, 463, 741, 1175
Sau96I GGNCC 5 cut(s) 86, 166, 401, 568, 569
ScaI AGTACT 1 cut(s) 657
SchI GAGTC 6 cut(s) 140, 194, 274, 349, 652, 926
ScrFI CCNGG 6 cut(s) 241, 257, 340, 395, 413, 460
SduI GDGCHC 4 cut(s) 176, 200, 572, 584
SfcI CTRYAG 1 cut(s) 659
SgrAI CRCCGGYG 2 cut(s) 178, 929
SinI GGWCC 1 cut(s) 401
SmiMI CAYNNNNRTG 2 cut(s) 767, 1131
SmlI CTYRAG 1 cut(s) 1045
SmoI CTYRAG 1 cut(s) 1045
SsiI CCGC 8 cut(s) 97, 105, 108, 253, 363, 398, 477, 480
SspMI CTAG 1 cut(s) 381
SstI GAGCTC 1 cut(s) 176
StyD4I CCNGG 6 cut(s) 239, 255, 338, 393, 411, 458
StyI CCWWGG 3 cut(s) 683, 1023, 1126
TaaI ACNGT 5 cut(s) 295, 512, 663, 1009, 1098
TaiI ACGT 1 cut(s) 66
TaqI TCGA 2 cut(s) 144, 353
TatI WGTACW 1 cut(s) 655
TauI GCSGC 4 cut(s) 110, 255, 479, 482
TfiI GAWTC 1 cut(s) 366
Tru1I TTAA 2 cut(s) 245, 705
Tru9I TTAA 2 cut(s) 245, 705
TscAI CASTG 3 cut(s) 517, 702, 1114
TseFI GTSAC 3 cut(s) 9, 342, 663
TseI GCWGC 7 cut(s) 216, 319, 524, 677, 730, 733, 1170
Tsp45I GTSAC 3 cut(s) 9, 342, 663
TspDTI ATGAA 4 cut(s) 327, 521, 789, 1076
TspGWI ACGGA 4 cut(s) 123, 224, 402, 579
TspRI CASTG 3 cut(s) 517, 702, 1114
Van91I CCANNNNNTGG 2 cut(s) 30, 1127
VpaK11BI GGWCC 1 cut(s) 401
XmiI GTMKAC 2 cut(s) 353, 920
XspI CTAG 1 cut(s) 381
ZrmI AGTACT 1 cut(s) 657
Zsp2I ATGCAT 2 cut(s) 826, 1138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.