MD01G1142200.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
25188431 .. 25190860
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1142200.v1.1.491

Sequence Viewer

Length: 1245 bp
ATGACTCAGTCCCAGGACGATCCCGGGTTCTATCTCCCCTCCCACTTCCTCACGGACGACGTCGTGCTCCACAACAACATGGACGACAGCAAGGGCAACAGCTTCCGTGGAAACTGTCTCGAACCCCGCGCCAGATTCCCCACCGAGTTCCCGTACGAGTCCGACTCGTCCGACTCCAACTGGGCCCTGAGTTCCCCCGTCGAGTCCGTGGTGGGCTCCTCCGAGACCGAGGGCGGCAGCAGCAGCGACGAGGAGGACTTCCTCGCCGGCCTGACTCGCCGCCTTGGCCAGTCCTCGCTGCAGCCGGCTCACCAGACCCAGAAGCTATCCGTCCCAGACGCCTTCCCCAAAGAGAAACCCGAGTGGGTCATGTCCGGGTCTCCCCAGTCGATTCTGAGCGGAATCGGGAGCTGGTCGAGCAACGGAAGCCCGACGGGCCCGTCTTCCCAGGTGCCGTCGCCACCGACGACGCCGTTTGGAGCTCAGGACGACACCTGGGAGCTGATATACGCGGCAGCCGGGCAGGTTGCGCGGTTGAAGATGACTAACAGCTTTGGTGGAGCAACTGAGTTCAGCGGCAACCACGGCCGCCGCGGACTTATGGGGCCATCTCGGATCCCCAGTCCTCCCCAACACTCTGCTCCCGGTCTCTGCCCCAACCAGAGCTTCCCTCAGTTTCACCATGTGAGGCAGGCGAACCAAGTAAATCATCTTCCCTGGTCAGCTCAGCCGCAGCAGCAACCTCAGCAACACCACCAGCAGATCCAAACTAGAGGAAGAAACACTGCAGGTTACGAGAGATGCGGGCATGGTGTTAATTTGCCCCAATCGGCATGGCCGCCGCTGCAAGTCCAACACCACCATCAAAATCAACAGCCACAGCACCACAATAACGCCGCCGTGCGTCCCGTTTTGCCCAACGGTTCCAACATCAAGAGGGAATGCGCTGGCACCGGCGTTTTCTTGCCTCGCAGATATACAAACCCTGCCCCTCCTGAACCGCGCAAGAAAGCAGGCTGTCCAACTGTTCTACTGCCGGCCAAGGTTGTTCACGCTCTGAACCTGAGCTTCGAGGACATGAACCGCCACGCTCCGCCGCGTTTCAGCGCCGGTTTGGCGCCAGACTACGAGGCACTGGCGGCACGAAGAAACGCCCTGCTGACTCAGCAAAGACTTGGATTAAGGGCAGCGGCCGAGGGGCCGGTAAATCATGAACTGCGCCTCCCCCAGGAGTGGACCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

415

Amino Acids

45.3

Weight (kDa)

7.04

Isoelectric Point (pI)

64.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 439
AatII GACGTC 1 cut(s) 63
Acc36I ACCTGC 2 cut(s) 514, 779
AccB1I GGYRCC 3 cut(s) 451, 950, 1117
AccBSI CCGCTC 1 cut(s) 399
AccII CGCG 6 cut(s) 129, 512, 532, 594, 1003, 1099
AclWI GGATC 4 cut(s) 14, 610, 623, 757
AcoI YGGCCR 5 cut(s) 286, 586, 836, 1038, 1191
AcyI GRCGYC 4 cut(s) 60, 339, 470, 1118
AdeI CACNNNGTG 1 cut(s) 685
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 1228, 1233
AgsI TTSAA 1 cut(s) 538
AjnI CCWGG 5 cut(s) 12, 447, 494, 716, 1227
AjuI GAANNNNNNNTTGG 2 cut(s) 650, 682
AloI GAACNNNNNNTCC 2 cut(s) 1206, 1238
AluBI AGCT 9 cut(s) 102, 325, 411, 482, 502, 552, 666, 725, 1068
AluI AGCT 9 cut(s) 102, 325, 411, 482, 502, 552, 666, 725, 1068
Alw21I GWGCWC 2 cut(s) 69, 484
Alw26I GTCTC 4 cut(s) 122, 218, 384, 653
AlwI GGATC 4 cut(s) 14, 610, 623, 757
Ama87I CYCGRG 2 cut(s) 23, 359
ApaI GGGCCC 2 cut(s) 187, 440
AspLEI GCGC 7 cut(s) 131, 532, 947, 1005, 1109, 1120, 1221
AspS9I GGNCC 7 cut(s) 183, 184, 436, 437, 605, 1199, 1236
AsuC2I CCSGG 5 cut(s) 24, 25, 376, 520, 645
AsuHPI GGTGA 2 cut(s) 302, 671
AvaI CYCGRG 2 cut(s) 23, 359
AvaII GGWCC 1 cut(s) 1236
BaeGI GKGCMC 2 cut(s) 187, 440
BalI TGGCCA 1 cut(s) 288
BamHI GGATCC 1 cut(s) 615
BanI GGYRCC 3 cut(s) 451, 950, 1117
BanII GRGCYC 4 cut(s) 187, 218, 440, 484
BarI GAAGNNNNNNTAC 2 cut(s) 696, 728
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 69, 484
BbvCI CCTCAGC 1 cut(s) 744
BccI CCATC 2 cut(s) 616, 870
BceAI ACGGC 4 cut(s) 439, 457, 601, 884
BciT130I CCWGG 5 cut(s) 14, 449, 496, 718, 1229
BcnI CCSGG 5 cut(s) 24, 25, 376, 520, 645
BcoDI GTCTC 4 cut(s) 122, 218, 384, 653
BfaI CTAG 1 cut(s) 771
BfmI CTRYAG 2 cut(s) 299, 786
BfoI RGCGCY 2 cut(s) 1110, 1121
BfuAI ACCTGC 2 cut(s) 514, 779
BglI GCCNNNNNGGC 3 cut(s) 285, 435, 1115
BlpI GCTNAGC 1 cut(s) 726
Bme18I GGWCC 1 cut(s) 1236
BmeT110I CYCGRG 2 cut(s) 23, 359
BmgT120I GGNCC 7 cut(s) 183, 184, 436, 437, 605, 1199, 1236
BmrI ACTGGG 3 cut(s) 190, 379, 615
BmsI GCATC 1 cut(s) 791
BmuI ACTGGG 3 cut(s) 190, 379, 615
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 4 cut(s) 149, 181, 655, 687
Bpu10I CCTNAGC 3 cut(s) 483, 744, 1064
Bpu1102I GCTNAGC 1 cut(s) 726
BpuMI CCSGG 5 cut(s) 24, 25, 376, 520, 645
BsaHI GRCGYC 4 cut(s) 60, 339, 470, 1118
BsaI GGTCTC 3 cut(s) 218, 384, 653
BsaXI ACNNNNNCTCC 2 cut(s) 1206, 1236
Bsc4I CCNNNNNNNGG 2 cut(s) 1228, 1233
Bse118I RCCGGY 6 cut(s) 266, 304, 953, 1036, 1109, 1201
Bse1I ACTGG 5 cut(s) 185, 289, 385, 621, 1140
BseBI CCWGG 5 cut(s) 14, 449, 496, 718, 1229
BseLI CCNNNNNNNGG 2 cut(s) 1228, 1233
BseNI ACTGG 5 cut(s) 185, 289, 385, 621, 1140
BseRI GAGGAG 2 cut(s) 208, 266
BseSI GKGCMC 2 cut(s) 187, 440
BseX3I CGGCCG 2 cut(s) 586, 1191
Bsh1236I CGCG 6 cut(s) 129, 512, 532, 594, 1003, 1099
Bsh1285I CGRYCG 2 cut(s) 589, 1194
BshNI GGYRCC 3 cut(s) 451, 950, 1117
BsiEI CGRYCG 2 cut(s) 589, 1194
BsiHKAI GWGCWC 2 cut(s) 69, 484
BsiHKCI CYCGRG 2 cut(s) 23, 359
BsiWI CGTACG 1 cut(s) 153
BslFI GGGAC 2 cut(s) 317, 891
BslI CCNNNNNNNGG 2 cut(s) 1228, 1233
BsmAI GTCTC 4 cut(s) 122, 218, 384, 653
BsmFI GGGAC 2 cut(s) 317, 891
BsmI GAATGC 1 cut(s) 947
Bso31I GGTCTC 3 cut(s) 218, 384, 653
BsoBI CYCGRG 2 cut(s) 23, 359
Bsp120I GGGCCC 2 cut(s) 183, 436
Bsp1286I GDGCHC 5 cut(s) 69, 187, 218, 440, 484
Bsp143I GATC 3 cut(s) 19, 615, 762
Bsp1720I GCTNAGC 1 cut(s) 726
BspFNI CGCG 6 cut(s) 129, 512, 532, 594, 1003, 1099
BspHI TCATGA 1 cut(s) 1210
BspMAI CTGCAG 2 cut(s) 303, 790
BspMI ACCTGC 2 cut(s) 514, 779
BspPI GGATC 4 cut(s) 14, 610, 623, 757
BspT107I GGYRCC 3 cut(s) 451, 950, 1117
BspTNI GGTCTC 3 cut(s) 218, 384, 653
BsrBI CCGCTC 1 cut(s) 399
BsrFI RCCGGY 6 cut(s) 266, 304, 953, 1036, 1109, 1201
BsrI ACTGG 5 cut(s) 185, 289, 385, 621, 1140
BssAI RCCGGY 6 cut(s) 266, 304, 953, 1036, 1109, 1201
BssMI GATC 3 cut(s) 19, 615, 762
BssNI GRCGYC 4 cut(s) 60, 339, 470, 1118
BssT1I CCWWGG 2 cut(s) 283, 1041
Bst2UI CCWGG 5 cut(s) 14, 449, 496, 718, 1229
Bst4CI ACNGT 3 cut(s) 116, 923, 1027
BstACI GRCGYC 4 cut(s) 60, 339, 470, 1118
BstC8I GCNNGC 7 cut(s) 268, 306, 693, 806, 949, 1015, 1038
BstDSI CCRYGG 4 cut(s) 106, 207, 583, 592
BstENI CCTNNNNNAGG 1 cut(s) 1226
BstFNI CGCG 6 cut(s) 129, 512, 532, 594, 1003, 1099
BstH2I RGCGCY 2 cut(s) 1110, 1121
BstHHI GCGC 7 cut(s) 131, 532, 947, 1005, 1109, 1120, 1221
BstKTI GATC 3 cut(s) 22, 618, 765
BstMAI GTCTC 4 cut(s) 122, 218, 384, 653
BstMBI GATC 3 cut(s) 19, 615, 762
BstMCI CGRYCG 2 cut(s) 589, 1194
BstNI CCWGG 5 cut(s) 14, 449, 496, 718, 1229
BstSFI CTRYAG 2 cut(s) 299, 786
BstSLI GKGCMC 2 cut(s) 187, 440
BstUI CGCG 6 cut(s) 129, 512, 532, 594, 1003, 1099
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 2 cut(s) 615, 762
BstYI RGATCY 2 cut(s) 615, 762
BstZI CGGCCG 2 cut(s) 586, 1191
BtgI CCRYGG 4 cut(s) 106, 207, 583, 592
BtsI GCAGTG 1 cut(s) 783
BtsIMutI CAGTG 2 cut(s) 783, 1133
BveI ACCTGC 2 cut(s) 514, 779
Cac8I GCNNGC 7 cut(s) 268, 306, 693, 806, 949, 1015, 1038
CciI TCATGA 1 cut(s) 1210
CfoI GCGC 7 cut(s) 131, 532, 947, 1005, 1109, 1120, 1221
Cfr10I RCCGGY 6 cut(s) 266, 304, 953, 1036, 1109, 1201
Cfr13I GGNCC 7 cut(s) 183, 184, 436, 437, 605, 1199, 1236
Cfr42I CCGCGG 1 cut(s) 595
Cfr9I CCCGGG 1 cut(s) 23
CseI GACGC 3 cut(s) 347, 478, 893
Csp6I GTAC 1 cut(s) 154
CviAII CATG 7 cut(s) 79, 370, 683, 809, 834, 1078, 1211
CviQI GTAC 1 cut(s) 154
DinI GGCGCC 1 cut(s) 1119
DpnI GATC 3 cut(s) 21, 617, 764
DpnII GATC 3 cut(s) 19, 615, 762
DraIII CACNNNGTG 1 cut(s) 685
DrdI GACNNNNNNGTC 1 cut(s) 439
DseDI GACNNNNNNGTC 1 cut(s) 439
EaeI YGGCCR 5 cut(s) 286, 586, 836, 1038, 1191
EagI CGGCCG 2 cut(s) 586, 1191
EciI GGCGGA 1 cut(s) 1083
Ecl136II GAGCTC 1 cut(s) 482
EclXI CGGCCG 2 cut(s) 586, 1191
Eco130I CCWWGG 2 cut(s) 283, 1041
Eco24I GRGCYC 4 cut(s) 187, 218, 440, 484
Eco31I GGTCTC 3 cut(s) 218, 384, 653
Eco47I GGWCC 1 cut(s) 1236
Eco52I CGGCCG 2 cut(s) 586, 1191
Eco53kI GAGCTC 1 cut(s) 482
Eco88I CYCGRG 2 cut(s) 23, 359
EcoICRI GAGCTC 1 cut(s) 482
EcoNI CCTNNNNNAGG 1 cut(s) 1226
EcoO109I RGGNCCY 1 cut(s) 184
EcoRII CCWGG 5 cut(s) 12, 447, 494, 716, 1227
EcoT14I CCWWGG 2 cut(s) 283, 1041
EcoT38I GRGCYC 4 cut(s) 187, 218, 440, 484
EgeI GGCGCC 1 cut(s) 1119
EheI GGCGCC 1 cut(s) 1119
ErhI CCWWGG 2 cut(s) 283, 1041
FaeI CATG 7 cut(s) 82, 373, 686, 812, 837, 1081, 1214
FaqI GGGAC 2 cut(s) 317, 891
FatI CATG 7 cut(s) 78, 369, 682, 808, 833, 1077, 1210
FauI CCCGC 2 cut(s) 134, 797
FriOI GRGCYC 4 cut(s) 187, 218, 440, 484
FspBI CTAG 1 cut(s) 771
GlaI GCGC 7 cut(s) 130, 531, 946, 1004, 1108, 1119, 1220
HaeII RGCGCY 2 cut(s) 1110, 1121
HgaI GACGC 3 cut(s) 347, 478, 893
HhaI GCGC 7 cut(s) 131, 532, 947, 1005, 1109, 1120, 1221
Hin1I GRCGYC 4 cut(s) 60, 339, 470, 1118
Hin1II CATG 7 cut(s) 82, 373, 686, 812, 837, 1081, 1214
Hin6I GCGC 7 cut(s) 129, 530, 945, 1003, 1107, 1118, 1219
HinP1I GCGC 7 cut(s) 129, 530, 945, 1003, 1107, 1118, 1219
HphI GGTGA 2 cut(s) 302, 671
Hpy166II GTNNAC 2 cut(s) 1051, 1236
Hpy188I TCNGA 6 cut(s) 163, 172, 223, 396, 615, 1059
Hpy188III TCNNGA 6 cut(s) 119, 406, 485, 934, 995, 1211
Hpy8I GTNNAC 2 cut(s) 1051, 1236
Hpy99I CGWCG 8 cut(s) 62, 65, 203, 251, 436, 460, 469, 472
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 3 cut(s) 116, 923, 1027
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 3 cut(s) 301, 788, 847
HpySE526I ACGT 1 cut(s) 60
Hsp92I GRCGYC 4 cut(s) 60, 339, 470, 1118
Hsp92II CATG 7 cut(s) 82, 373, 686, 812, 837, 1081, 1214
HspAI GCGC 7 cut(s) 129, 530, 945, 1003, 1107, 1118, 1219
KasI GGCGCC 1 cut(s) 1117
KroI GCCGGC 3 cut(s) 266, 304, 1036
KroNI GCCGGC 3 cut(s) 268, 306, 1038
KspI CCGCGG 1 cut(s) 595
Kzo9I GATC 3 cut(s) 19, 615, 762
LmnI GCTCC 8 cut(s) 72, 221, 408, 479, 499, 560, 646, 1096
LweI GCATC 1 cut(s) 791
MaeI CTAG 1 cut(s) 771
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 791
MalI GATC 3 cut(s) 21, 617, 764
MbiI CCGCTC 1 cut(s) 399
MboI GATC 3 cut(s) 19, 615, 762
MboII GAAGA 5 cut(s) 435, 550, 704, 789, 1158
MflI RGATCY 2 cut(s) 615, 762
MhlI GDGCHC 5 cut(s) 69, 187, 218, 440, 484
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 1 cut(s) 817
MluNI TGGCCA 1 cut(s) 288
Mly113I GGCGCC 1 cut(s) 1118
MlyI GAGTC 6 cut(s) 158, 167, 167, 212, 268, 1156
MmeI TCCRAC 6 cut(s) 186, 195, 201, 877, 951, 1046
Mox20I TGGCCA 1 cut(s) 288
MroNI GCCGGC 3 cut(s) 266, 304, 1036
MscI TGGCCA 1 cut(s) 288
MseI TTAA 2 cut(s) 816, 1181
Msp20I TGGCCA 1 cut(s) 288
MspA1I CMGCKG 4 cut(s) 576, 594, 844, 1190
Mva1269I GAATGC 1 cut(s) 947
MvaI CCWGG 5 cut(s) 14, 449, 496, 718, 1229
MvnI CGCG 6 cut(s) 129, 512, 532, 594, 1003, 1099
NaeI GCCGGC 3 cut(s) 268, 306, 1038
NarI GGCGCC 1 cut(s) 1118
NciI CCSGG 5 cut(s) 24, 25, 376, 520, 645
NdeII GATC 3 cut(s) 19, 615, 762
NgoMIV GCCGGC 3 cut(s) 266, 304, 1036
NlaIII CATG 7 cut(s) 82, 373, 686, 812, 837, 1081, 1214
NmeAIII GCCGAG 1 cut(s) 1219
PagI TCATGA 1 cut(s) 1210
PcsI WCGNNNNNNNCGW 1 cut(s) 464
PctI GAATGC 1 cut(s) 947
PdiI GCCGGC 3 cut(s) 268, 306, 1038
PfeI GAWTC 3 cut(s) 135, 391, 402
Pfl23II CGTACG 1 cut(s) 153
PflFI GACNNNGTC 2 cut(s) 7, 59
PleI GAGTC 6 cut(s) 158, 166, 167, 211, 268, 1156
PluTI GGCGCC 1 cut(s) 1121
PpsI GAGTC 6 cut(s) 158, 166, 167, 211, 268, 1156
Psp124BI GAGCTC 1 cut(s) 484
Psp6I CCWGG 5 cut(s) 12, 447, 494, 716, 1227
PspGI CCWGG 5 cut(s) 12, 447, 494, 716, 1227
PspLI CGTACG 1 cut(s) 153
PspOMI GGGCCC 2 cut(s) 183, 436
PspPI GGNCC 7 cut(s) 183, 184, 436, 437, 605, 1199, 1236
PstI CTGCAG 2 cut(s) 303, 790
PsuI RGATCY 2 cut(s) 615, 762
PsyI GACNNNGTC 2 cut(s) 7, 59
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SacI GAGCTC 1 cut(s) 484
SacII CCGCGG 1 cut(s) 595
SaqAI TTAA 2 cut(s) 816, 1181
Sau3AI GATC 3 cut(s) 19, 615, 762
Sau96I GGNCC 7 cut(s) 183, 184, 436, 437, 605, 1199, 1236
SchI GAGTC 6 cut(s) 158, 167, 167, 212, 268, 1156
SduI GDGCHC 5 cut(s) 69, 187, 218, 440, 484
SfaNI GCATC 1 cut(s) 791
SfcI CTRYAG 2 cut(s) 299, 786
SfoI GGCGCC 1 cut(s) 1119
Sfr303I CCGCGG 1 cut(s) 595
SgrAI CRCCGGYG 1 cut(s) 953
SgrBI CCGCGG 1 cut(s) 595
SinI GGWCC 1 cut(s) 1236
SmaI CCCGGG 1 cut(s) 25
Sse9I AATT 1 cut(s) 817
SspDI GGCGCC 1 cut(s) 1117
SspMI CTAG 1 cut(s) 771
SstI GAGCTC 1 cut(s) 484
StyI CCWWGG 2 cut(s) 283, 1041
TaaI ACNGT 3 cut(s) 116, 923, 1027
TaiI ACGT 1 cut(s) 63
TaqI TCGA 5 cut(s) 120, 201, 389, 416, 1071
TaqII GACCGA 1 cut(s) 242
TasI AATT 1 cut(s) 817
TfiI GAWTC 3 cut(s) 135, 391, 402
Tru1I TTAA 2 cut(s) 816, 1181
Tru9I TTAA 2 cut(s) 816, 1181
TscAI CASTG 2 cut(s) 790, 1140
TspDTI ATGAA 2 cut(s) 1094, 1227
TspGWI ACGGA 5 cut(s) 68, 95, 196, 319, 438
TspMI CCCGGG 1 cut(s) 23
TspRI CASTG 2 cut(s) 790, 1140
Tth111I GACNNNGTC 2 cut(s) 7, 59
VpaK11BI GGWCC 1 cut(s) 1236
XagI CCTNNNNNAGG 1 cut(s) 1226
XmaI CCCGGG 1 cut(s) 23
XspI CTAG 1 cut(s) 771
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.