Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Reverse (-)

16848160 .. 16850494

Gene Structure 2335 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCCGTCGGAGATTGTTGACAGGAAAAGGAAGTCTCGTGGAACACGAGATGTAGCTGAGATTCTAAGGCAATGGAGAGAGTACAATGAGCAGATTGAGGCAGAATCTTGTATCGATGGTGGTGGTCCAAAATCAATCCGAAAGCCTCCTCCAAAAGGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGTGGACCTGAAAACGGGATTTGTGACTATAGAGGAGTTAGACAGAGGAGATGGGGTAAATGGGTTGCTGAGATCCGTGAGCCAGACGGAGGTGCTAGGTTGTGGCTCGGTACTTTCTCCAGTTCATATGAAGCTGCATTGGCTTATGACGAGGCGGCCAAAGCTATATATGGTCAGTCTGCCAGACTCAATCTTCCCGAGATCACAAATCGCTCTTCTTCGACTGCTGCCACTGCCACTGTGTCAGGCTCGGTTACTGCATTTTCTGATGAATCTGAAGTTTGTGCACGTGAGGATACAAATGCAAGTTCAGGTTTTGGTCAGGTGAAACTAGAGGATTGTAGCGATGAATATGTTCTCTTAGATAGTTCTCAGTGTATTAAAGAGGAGCTGAAAGGAAAAGAGGAAGTGAGGGAAGAACATAACTTGGCTGTTGGTTTTGGAATTGGACAGGACTCGAAAAGGGAGACTTTGGATGCTTGGTTGATGGGAAATGGCAATGAACAAGAACCATTGGAGTTTGGTGTGGATGAAACGTTTGATATTAATGAGCTATTGGGTATATTAAACGACAACAATGTGTCTGGTCAAGAGACAATGCAGTATCAAGTGGATAGACACCCAAATTTCAGTTACCAAACGCAGTTTCCAAATTCTAACTTGCTCGGGAGCCTCAACCCTATGGAGATTGCTCAACCAGGAGTTGATTATGGATGTCCTTATGTGCAGCCCAGTGATATGGAGAACTATGGTATTGATTTAGACCATCGCAGGTTCAATGATCTTGACATACAGGACTTGGATTTTGGAGGAGACAAAGATGTTCATGGATCTACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

341

Amino Acids

37.83

Weight (kDa)

4.67

Isoelectric Point (pI)

43.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	71 - 120	5.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	948
AciI	CCGC	1 cut(s)	341
AclI	AACGTT	1 cut(s)	722
AclWI	GGATC	2 cut(s)	253, 1024
AcoI	YGGCCR	1 cut(s)	342
AcsI	RAATTY	2 cut(s)	811, 838
AcuI	CTGAAG	1 cut(s)	483
AcvI	CACGTG	1 cut(s)	476
AfaI	GTAC	2 cut(s)	83, 298
AfiI	CCNNNNNNNGG	3 cut(s)	155, 200, 275
AgsI	TTSAA	1 cut(s)	964
AjnI	CCWGG	1 cut(s)	883
AjuI	GAANNNNNNNTTGG	2 cut(s)	816, 848
AluBI	AGCT	5 cut(s)	56, 320, 350, 577, 739
AluI	AGCT	5 cut(s)	56, 320, 350, 577, 739
Alw21I	GWGCWC	1 cut(s)	475
Alw26I	GTCTC	4 cut(s)	39, 647, 773, 993
Alw44I	GTGCAC	1 cut(s)	471
AlwI	GGATC	2 cut(s)	253, 1024
Ama87I	CYCGRG	2 cut(s)	383, 851
AoxI	GGCC	1 cut(s)	342
ApaLI	GTGCAC	1 cut(s)	471
ApeKI	GCWGC	3 cut(s)	320, 413, 913
ApoI	RAATTY	2 cut(s)	811, 838
ArsI	GACNNNNNNTTYG	2 cut(s)	974, 1006
AseI	ATTAAT	1 cut(s)	732
Asp700I	GAANNNNTTC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	125, 191
AsuHPI	GGTGA	1 cut(s)	523
AvaI	CYCGRG	2 cut(s)	383, 851
AvaII	GGWCC	2 cut(s)	125, 191
BaeGI	GKGCMC	1 cut(s)	475
BauI	CACGAG	2 cut(s)	36, 45
BbrPI	CACGTG	1 cut(s)	476
Bbv12I	GWGCWC	1 cut(s)	475
BbvI	GCAGC	3 cut(s)	307, 400, 925
BccI	CCATC	4 cut(s)	110, 231, 667, 960
BciT130I	CCWGG	1 cut(s)	885
BciVI	GTATCC	1 cut(s)	475
BcoDI	GTCTC	4 cut(s)	39, 647, 773, 993
BfaI	CTAG	2 cut(s)	282, 518
BfmI	CTRYAG	1 cut(s)	214
BfuAI	ACCTGC	1 cut(s)	948
BfuI	GTATCC	1 cut(s)	475
BisI	GCNGC	4 cut(s)	321, 342, 414, 914
BlsI	GCNGC	4 cut(s)	322, 343, 415, 915
Bme1390I	CCNGG	1 cut(s)	885
Bme18I	GGWCC	2 cut(s)	125, 191
BmeT110I	CYCGRG	2 cut(s)	383, 851
BmgT120I	GGNCC	2 cut(s)	125, 191
BmiI	GGNNCC	1 cut(s)	857
BmrFI	CCNGG	1 cut(s)	885
BmrI	ACTGGG	1 cut(s)	912
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	1 cut(s)	912
BpmI	CTGGAG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 200, 275
Bse1I	ACTGG	2 cut(s)	306, 918
Bse3DI	GCAATG	2 cut(s)	77, 691
BseBI	CCWGG	1 cut(s)	885
BseCI	ATCGAT	1 cut(s)	114
BseGI	GGATG	3 cut(s)	667, 721, 905
BseLI	CCNNNNNNNGG	3 cut(s)	155, 200, 275
BseMI	GCAATG	2 cut(s)	77, 691
BseMII	CTCAG	3 cut(s)	48, 246, 572
BseNI	ACTGG	2 cut(s)	306, 918
BseRI	GAGGAG	5 cut(s)	138, 234, 247, 587, 1011
BseSI	GKGCMC	1 cut(s)	475
BseXI	GCAGC	3 cut(s)	307, 400, 925
BsgI	GTGCAG	1 cut(s)	932
BshFI	GGCC	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	114
BsiHKAI	GWGCWC	1 cut(s)	475
BsiHKCI	CYCGRG	2 cut(s)	383, 851
BslI	CCNNNNNNNGG	3 cut(s)	155, 200, 275
BsmAI	GTCTC	4 cut(s)	39, 647, 773, 993
BsnI	GGCC	1 cut(s)	344
BsoBI	CYCGRG	2 cut(s)	383, 851
Bsp1286I	GDGCHC	1 cut(s)	475
Bsp143I	GATC	4 cut(s)	258, 387, 967, 1016
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	1 cut(s)	344
BspCNI	CTCAG	3 cut(s)	49, 247, 571
BspDI	ATCGAT	1 cut(s)	114
BspLI	GGNNCC	1 cut(s)	857
BspMI	ACCTGC	1 cut(s)	948
BspPI	GGATC	2 cut(s)	253, 1024
BspQI	GCTCTTC	1 cut(s)	406
BsrDI	GCAATG	2 cut(s)	77, 691
BsrI	ACTGG	2 cut(s)	306, 918
BssMI	GATC	4 cut(s)	258, 387, 967, 1016
BssSI	CACGAG	2 cut(s)	36, 45
Bst2BI	CACGAG	2 cut(s)	36, 45
Bst2UI	CCWGG	1 cut(s)	885
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	406
BstBAI	YACGTR	1 cut(s)	476
BstDEI	CTNAG	5 cut(s)	57, 65, 255, 547, 558
BstENI	CCTNNNNNAGG	1 cut(s)	153
BstF5I	GGATG	3 cut(s)	667, 721, 905
BstKTI	GATC	4 cut(s)	261, 390, 970, 1019
BstMAI	GTCTC	4 cut(s)	39, 647, 773, 993
BstMBI	GATC	4 cut(s)	258, 387, 967, 1016
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 347, 419
BstNI	CCWGG	1 cut(s)	885
BstSCI	CCNGG	1 cut(s)	883
BstSFI	CTRYAG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	475
BstV1I	GCAGC	3 cut(s)	307, 400, 925
BstX2I	RGATCY	2 cut(s)	258, 1016
BstXI	CCANNNNNNTGG	1 cut(s)	925
BstYI	RGATCY	2 cut(s)	258, 1016
Bsu15I	ATCGAT	1 cut(s)	114
BsuI	GTATCC	1 cut(s)	475
BsuRI	GGCC	1 cut(s)	344
BsuTUI	ATCGAT	1 cut(s)	114
BtgZI	GCGATG	2 cut(s)	546, 938
BtsCI	GGATG	3 cut(s)	667, 721, 905
BtsI	GCAGTG	1 cut(s)	417
BtsIMutI	CAGTG	4 cut(s)	417, 423, 566, 925
BveI	ACCTGC	1 cut(s)	948
Cfr13I	GGNCC	2 cut(s)	125, 191
ClaI	ATCGAT	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	82, 297
CviAII	CATG	1 cut(s)	1013
CviQI	GTAC	2 cut(s)	82, 297
DdeI	CTNAG	5 cut(s)	57, 65, 255, 547, 558
DpnI	GATC	4 cut(s)	260, 389, 969, 1018
DpnII	GATC	4 cut(s)	258, 387, 967, 1016
EaeI	YGGCCR	1 cut(s)	342
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Eco47I	GGWCC	2 cut(s)	125, 191
Eco57I	CTGAAG	1 cut(s)	483
Eco72I	CACGTG	1 cut(s)	476
Eco88I	CYCGRG	2 cut(s)	383, 851
EcoNI	CCTNNNNNAGG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	883
FaeI	CATG	1 cut(s)	1016
FalI	AAGNNNNNCTT	2 cut(s)	640, 672
FatI	CATG	1 cut(s)	1012
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	321, 342, 414, 914
FokI	GGATG	3 cut(s)	674, 728, 912
Fsp4HI	GCNGC	4 cut(s)	321, 342, 414, 914
FspBI	CTAG	2 cut(s)	282, 518
GluI	GCNGC	4 cut(s)	321, 342, 414, 914
GsuI	CTGGAG	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	344
Hin1II	CATG	1 cut(s)	1016
HincII	GTYRAC	1 cut(s)	19
HindII	GTYRAC	1 cut(s)	19
HinfI	GANTC	5 cut(s)	61, 104, 372, 458, 641
HphI	GGTGA	1 cut(s)	523
Hpy166II	GTNNAC	3 cut(s)	19, 191, 473
Hpy188I	TCNGA	4 cut(s)	10, 140, 454, 463
Hpy188III	TCNNGA	4 cut(s)	383, 776, 853, 971
Hpy8I	GTNNAC	3 cut(s)	19, 191, 473
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4IV	ACGT	2 cut(s)	475, 722
HpyCH4V	TGCA	6 cut(s)	323, 446, 473, 491, 787, 913
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 347, 419
HpyF3I	CTNAG	5 cut(s)	57, 65, 255, 547, 558
HpySE526I	ACGT	2 cut(s)	475, 722
Hsp92II	CATG	1 cut(s)	1016
Kzo9I	GATC	4 cut(s)	258, 387, 967, 1016
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	2 cut(s)	574, 855
Lsp1109I	GCAGC	3 cut(s)	307, 400, 925
LweI	GCATC	1 cut(s)	652
MaeI	CTAG	2 cut(s)	282, 518
MaeII	ACGT	2 cut(s)	475, 722
MaeIII	GTNAC	3 cut(s)	209, 439, 818
MalI	GATC	4 cut(s)	260, 389, 969, 1018
MboI	GATC	4 cut(s)	258, 387, 967, 1016
MboII	GAAGA	4 cut(s)	371, 393, 396, 614
MflI	RGATCY	2 cut(s)	258, 1016
MhlI	GDGCHC	1 cut(s)	475
MluCI	AATT	3 cut(s)	630, 811, 838
MlyI	GAGTC	2 cut(s)	366, 635
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	3 cut(s)	567, 732, 752
MspR9I	CCNGG	1 cut(s)	885
MvaI	CCWGG	1 cut(s)	885
MwoI	GCNNNNNNNGC	3 cut(s)	326, 347, 419
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	4 cut(s)	258, 387, 967, 1016
NlaIII	CATG	1 cut(s)	1016
NlaIV	GGNNCC	1 cut(s)	857
NmuCI	GTSAC	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	61, 104, 458
PkrI	GCNGC	4 cut(s)	322, 343, 415, 915
PleI	GAGTC	2 cut(s)	366, 635
PmaCI	CACGTG	1 cut(s)	476
PmlI	CACGTG	1 cut(s)	476
PpsI	GAGTC	2 cut(s)	366, 635
Ppu21I	YACGTR	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	732
Psp1406I	AACGTT	1 cut(s)	722
Psp6I	CCWGG	1 cut(s)	883
PspCI	CACGTG	1 cut(s)	476
PspGI	CCWGG	1 cut(s)	883
PspN4I	GGNNCC	1 cut(s)	857
PspPI	GGNCC	2 cut(s)	125, 191
PsuI	RGATCY	2 cut(s)	258, 1016
RsaI	GTAC	2 cut(s)	83, 298
RsaNI	GTAC	2 cut(s)	82, 297
SapI	GCTCTTC	1 cut(s)	406
SaqAI	TTAA	3 cut(s)	567, 732, 752
SatI	GCNGC	4 cut(s)	321, 342, 414, 914
Sau3AI	GATC	4 cut(s)	258, 387, 967, 1016
Sau96I	GGNCC	2 cut(s)	125, 191
SchI	GAGTC	2 cut(s)	366, 635
ScrFI	CCNGG	1 cut(s)	885
SduI	GDGCHC	1 cut(s)	475
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	214
SinI	GGWCC	2 cut(s)	125, 191
Sse9I	AATT	3 cut(s)	630, 811, 838
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	2 cut(s)	282, 518
StyD4I	CCNGG	1 cut(s)	883
TaaI	ACNGT	1 cut(s)	427
TaiI	ACGT	2 cut(s)	478, 725
TaqI	TCGA	4 cut(s)	114, 161, 407, 644
TasI	AATT	3 cut(s)	630, 811, 838
TatI	WGTACW	1 cut(s)	81
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	3 cut(s)	61, 104, 458
Tru1I	TTAA	3 cut(s)	567, 732, 752
Tru9I	TTAA	3 cut(s)	567, 732, 752
TscAI	CASTG	4 cut(s)	424, 430, 566, 925
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	3 cut(s)	320, 413, 913
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	8 cut(s)	191, 300, 330, 471, 549, 702, 732, 1001
TspGWI	ACGGA	2 cut(s)	251, 288
TspRI	CASTG	4 cut(s)	424, 430, 566, 925
VneI	GTGCAC	1 cut(s)	471
VpaK11BI	GGWCC	2 cut(s)	125, 191
VspI	ATTAAT	1 cut(s)	732
XagI	CCTNNNNNAGG	1 cut(s)	153
XapI	RAATTY	2 cut(s)	811, 838
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	282, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.