Rh2DG572800

Dehydration-responsive element-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008991
Physical Location & Seq
Forward (+)
80304129 .. 80304797
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG572800.1

Sequence Viewer

Length: 669 bp
ATGGTTATCTCTAAAGATAAGTTCCTCTTTCTATTACTGGCAGGTATCTCATTGTATTCCCTGTTCAGTACAAATTTGGATTGTATGACCAAGTTGAAAAAATTCCATAGTAAACAGGATGGATCTAATCCTGTGGCTGAGACTCTTGCGAAGTGGAAAGAGATTAACGACAATCTAGAATCATCCAATGATGGGAGTAAACCAACTCGCAAAGTTCCTGCCAAGGGGTCTAAGAAGGGATGCATGAAAGGTAAGGGAGGACCTGAGAATTCTCGATGTAACTACAGAGGTGTTAGGCAGAGGACATGGGGCAAGTGGGTTGCAGAAATCCGCTCACCAAATAGGGGAAGTAGGCTCTGGCTAGGTACCTTTCCAACTGCAATTGAAGCTGCTCTTGCCTACGATGAAGCCGCAAGGGCCATGTACGGTTCCTCTGCCCGTCTTAACTTTCCGAAGGTTACGATCTCCAGTTACTCAACAAATTCTTCTTGTACAGCAACTCTATCGGCTCCTTCCTGTGTAGTGACTTCTGCAGGTTCAGAATCATCAGGTCACTCTGAGGATTTTTCGCCTCAGGATAAGGTGAATTCTCATTCCCCTCACGTAGTGAACACTGATGTTATCGATCTAAATCAAATGGATCTAAATCATACTGAGGAGGATGAATGA

Protein Analysis

222

Amino Acids

24.27

Weight (kDa)

8.75

Isoelectric Point (pI)

44.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 94 - 143 2.3e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0008991)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca FvH4_6g43870
malus_domestica MD17G1089700.v1.1
prunus_persica Prupe.3G223300_v2.0.a1
pyrus_communis pycom17g08690
rosa_chinensis RchiOBHm_Chr2g0160621
rosa_laevigata RLG00000021227
rosa_multiflora Rmu_sc0000674.1_g000028
rosa_roxburghii Rroxscaffold_2G00089550
rosa_rugosa Rorug02G0484300
rosa_samantha Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana Rw2G045510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 32, 524
Acc65I GGTACC 1 cut(s) 365
AccB1I GGYRCC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 333
AciI CCGC 2 cut(s) 331, 411
AclWI GGATC 2 cut(s) 130, 648
AcsI RAATTY 5 cut(s) 73, 101, 268, 481, 586
AdeI CACNNNGTG 1 cut(s) 607
AfaI GTAC 4 cut(s) 70, 367, 425, 493
AfiI CCNNNNNNNGG 3 cut(s) 192, 224, 344
AgsI TTSAA 2 cut(s) 97, 386
AluBI AGCT 1 cut(s) 389
AluI AGCT 1 cut(s) 389
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 2 cut(s) 130, 648
AoxI GGCC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 5 cut(s) 73, 101, 268, 481, 586
Asp700I GAANNNNTTC 1 cut(s) 101
Asp718I GGTACC 1 cut(s) 365
AspS9I GGNCC 2 cut(s) 260, 417
AsuHPI GGTGA 2 cut(s) 327, 595
AvaII GGWCC 1 cut(s) 260
AxyI CCTNAGG 1 cut(s) 573
BanI GGYRCC 1 cut(s) 365
BbvI GCAGC 1 cut(s) 376
BccI CCATC 2 cut(s) 113, 185
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 2 cut(s) 176, 362
BfmI CTRYAG 2 cut(s) 283, 531
BfuAI ACCTGC 2 cut(s) 32, 524
BglI GCCNNNNNGGC 1 cut(s) 416
BisI GCNGC 2 cut(s) 390, 411
BlsI GCNGC 2 cut(s) 391, 412
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 2 cut(s) 260, 417
BmiI GGNNCC 3 cut(s) 367, 430, 510
BmsI GCATC 1 cut(s) 230
BpmI CTGGAG 1 cut(s) 451
Bsa29I ATCGAT 1 cut(s) 624
BsaAI YACGTR 1 cut(s) 604
BsaBI GATNNNNATC 2 cut(s) 630, 645
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 3 cut(s) 192, 224, 344
Bse1I ACTGG 2 cut(s) 42, 468
Bse21I CCTNAGG 1 cut(s) 573
Bse8I GATNNNNATC 2 cut(s) 630, 645
BseCI ATCGAT 1 cut(s) 624
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 4 cut(s) 124, 182, 245, 667
BseJI GATNNNNATC 2 cut(s) 630, 645
BseLI CCNNNNNNNGG 3 cut(s) 192, 224, 344
BseMII CTCAG 5 cut(s) 129, 255, 549, 587, 645
BseNI ACTGG 2 cut(s) 42, 468
BseXI GCAGC 1 cut(s) 376
BshFI GGCC 1 cut(s) 419
BshNI GGYRCC 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 624
BslI CCNNNNNNNGG 3 cut(s) 192, 224, 344
BsmAI GTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 419
Bsp1407I TGTACA 1 cut(s) 491
Bsp143I GATC 4 cut(s) 122, 462, 625, 640
BspACI CCGC 2 cut(s) 331, 411
BspANI GGCC 1 cut(s) 419
BspCNI CTCAG 5 cut(s) 130, 256, 550, 586, 646
BspDI ATCGAT 1 cut(s) 624
BspLI GGNNCC 3 cut(s) 367, 430, 510
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 2 cut(s) 32, 524
BspPI GGATC 2 cut(s) 130, 648
BspT107I GGYRCC 1 cut(s) 365
BsrBI CCGCTC 1 cut(s) 333
BsrGI TGTACA 1 cut(s) 491
BsrI ACTGG 2 cut(s) 42, 468
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 4 cut(s) 122, 462, 625, 640
BssT1I CCWWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 491
BstBAI YACGTR 1 cut(s) 604
BstDEI CTNAG 6 cut(s) 138, 231, 264, 558, 573, 654
BstF5I GGATG 4 cut(s) 124, 182, 245, 667
BstKTI GATC 4 cut(s) 125, 465, 628, 643
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 4 cut(s) 122, 462, 625, 640
BstMWI GCNNNNNNNGC 3 cut(s) 386, 395, 416
BstSFI CTRYAG 2 cut(s) 283, 531
BstV1I GCAGC 1 cut(s) 376
BstX2I RGATCY 2 cut(s) 122, 640
BstYI RGATCY 2 cut(s) 122, 640
Bsu15I ATCGAT 1 cut(s) 624
Bsu36I CCTNAGG 1 cut(s) 573
BsuRI GGCC 1 cut(s) 419
BsuTUI ATCGAT 1 cut(s) 624
BtsCI GGATG 4 cut(s) 124, 182, 245, 667
BtsIMutI CAGTG 1 cut(s) 612
BveI ACCTGC 2 cut(s) 32, 524
Cfr13I GGNCC 2 cut(s) 260, 417
ClaI ATCGAT 1 cut(s) 624
Csp6I GTAC 4 cut(s) 69, 366, 424, 492
CviAII CATG 3 cut(s) 244, 306, 421
CviJI RGCY 7 cut(s) 137, 355, 361, 389, 410, 419, 509
CviKI_1 RGCY 7 cut(s) 137, 355, 361, 389, 410, 419, 509
CviQI GTAC 4 cut(s) 69, 366, 424, 492
DdeI CTNAG 6 cut(s) 138, 231, 264, 558, 573, 654
DpnI GATC 4 cut(s) 124, 464, 627, 642
DpnII GATC 4 cut(s) 122, 462, 625, 640
DraIII CACNNNGTG 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 260
Eco81I CCTNAGG 1 cut(s) 573
EcoO109I RGGNCCY 1 cut(s) 260
EcoRI GAATTC 2 cut(s) 268, 586
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 3 cut(s) 247, 309, 424
FaiI YATR 6 cut(s) 86, 108, 245, 307, 422, 651
FalI AAGNNNNNCTT 4 cut(s) 11, 43, 378, 410
FatI CATG 3 cut(s) 243, 305, 420
Fnu4HI GCNGC 2 cut(s) 390, 411
FokI GGATG 3 cut(s) 131, 169, 252
Fsp4HI GCNGC 2 cut(s) 390, 411
FspBI CTAG 2 cut(s) 176, 362
GluI GCNGC 2 cut(s) 390, 411
GsuI CTGGAG 1 cut(s) 451
HaeIII GGCC 1 cut(s) 419
Hin1II CATG 3 cut(s) 247, 309, 424
HinfI GANTC 3 cut(s) 142, 179, 542
HphI GGTGA 2 cut(s) 327, 595
Hpy166II GTNNAC 3 cut(s) 113, 200, 610
Hpy188I TCNGA 3 cut(s) 453, 541, 559
Hpy188III TCNNGA 3 cut(s) 176, 273, 575
Hpy8I GTNNAC 3 cut(s) 113, 200, 610
HpyAV CCTTC 3 cut(s) 229, 448, 522
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 603
HpyCH4V TGCA 4 cut(s) 243, 323, 380, 533
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 395, 416
HpyF3I CTNAG 6 cut(s) 138, 231, 264, 558, 573, 654
HpySE526I ACGT 1 cut(s) 603
Hsp92II CATG 3 cut(s) 247, 309, 424
KpnI GGTACC 1 cut(s) 369
Kzo9I GATC 4 cut(s) 122, 462, 625, 640
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 376
LweI GCATC 1 cut(s) 230
MaeI CTAG 2 cut(s) 176, 362
MaeII ACGT 1 cut(s) 603
MaeIII GTNAC 5 cut(s) 278, 457, 470, 523, 551
MalI GATC 4 cut(s) 124, 464, 627, 642
MbiI CCGCTC 1 cut(s) 333
MboI GATC 4 cut(s) 122, 462, 625, 640
MboII GAAGA 1 cut(s) 477
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 2 cut(s) 122, 640
MluCI AATT 6 cut(s) 73, 101, 268, 381, 481, 586
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 398
Mph1103I ATGCAT 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 2 cut(s) 165, 444
MunI CAATTG 1 cut(s) 381
MwoI GCNNNNNNNGC 3 cut(s) 386, 395, 416
NdeII GATC 4 cut(s) 122, 462, 625, 640
NlaIII CATG 3 cut(s) 247, 309, 424
NlaIV GGNNCC 3 cut(s) 367, 430, 510
NmuCI GTSAC 2 cut(s) 523, 551
NsiI ATGCAT 1 cut(s) 245
PdmI GAANNNNTTC 1 cut(s) 101
PfeI GAWTC 2 cut(s) 179, 542
PkrI GCNGC 2 cut(s) 391, 412
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 604
PpuMI RGGWCCY 1 cut(s) 260
Psp5II RGGWCCY 1 cut(s) 260
PspN4I GGNNCC 3 cut(s) 367, 430, 510
PspPI GGNCC 2 cut(s) 260, 417
PspPPI RGGWCCY 1 cut(s) 260
PsrI GAACNNNNNNTAC 2 cut(s) 47, 79
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 2 cut(s) 122, 640
RsaI GTAC 4 cut(s) 70, 367, 425, 493
RsaNI GTAC 4 cut(s) 69, 366, 424, 492
SaqAI TTAA 2 cut(s) 165, 444
SatI GCNGC 2 cut(s) 390, 411
Sau3AI GATC 4 cut(s) 122, 462, 625, 640
Sau96I GGNCC 2 cut(s) 260, 417
SchI GAGTC 1 cut(s) 136
SfaNI GCATC 1 cut(s) 230
SfcI CTRYAG 2 cut(s) 283, 531
SinI GGWCC 1 cut(s) 260
Sse9I AATT 6 cut(s) 73, 101, 268, 381, 481, 586
SsiI CCGC 2 cut(s) 331, 411
SspMI CTAG 2 cut(s) 176, 362
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 1 cut(s) 606
TaqI TCGA 2 cut(s) 274, 624
TasI AATT 6 cut(s) 73, 101, 268, 381, 481, 586
TatI WGTACW 2 cut(s) 68, 491
TauI GCSGC 1 cut(s) 413
TfiI GAWTC 2 cut(s) 179, 542
Tru1I TTAA 2 cut(s) 165, 444
Tru9I TTAA 2 cut(s) 165, 444
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 2 cut(s) 523, 551
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 2 cut(s) 523, 551
TspDTI ATGAA 2 cut(s) 260, 420
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 5 cut(s) 73, 101, 268, 481, 586
XbaI TCTAGA 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 101
XspI CTAG 2 cut(s) 176, 362
Zsp2I ATGCAT 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.