Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000674.1

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Forward (+)

144899 .. 147173

Gene Structure 2275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000674.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atgaaaaaaaatggatctttcagcccaaaggcttattgggttcatgggctctcttgcataagggacaaaatttcaaatgattgtgccaattttcggccccaattgcgagactcaaggctggggagtcacggagcagaacaaggtatctcattgtattccctgttcagtacaaatttggattgtatgaccaagttgaacaaattccatagtaaacaggatggatctaatcctgtggctgagactcttgcgaagtggaaagagcttaacgacaatctagaatcatccaatgatgggagtaaaccaactcgcaaagttcctgccaaggggtctaagaagggatgcatgaaaggtaagggaggacctgagaattctcgatgtaactacagaggtgttaggcagaggacatggggcaagtgggttgcagaaatccgctcaccaaataggggaagtaggctctggctaggtacctttccaactgcaattgaagctgctcttgcctacgatgaagctgcaagggccatgtacggttcctctgcccgtctcaactttccgaaggttacgatctccagttactcaacaaattcttcttgtagagcaactctatcggctccttcctgtgtagtgacttctgcaggttcagaatcatcaggtcactctgaggatttttcgcctcaggataaggtgaattctcattcccctcacgtagtgaacactgatgttatcgatctaaatcaaatggatctaaatcataccgaggaggatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

255

Amino Acids

27.98

Weight (kDa)

9.03

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
Acc65I	GGTACC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	464
AccBSI	CCGCTC	1 cut(s)	432
AciI	CCGC	1 cut(s)	430
AclWI	GGATC	3 cut(s)	22, 229, 747
AcsI	RAATTY	6 cut(s)	69, 172, 200, 367, 580, 685
AdeI	CACNNNGTG	1 cut(s)	706
AfaI	GTAC	3 cut(s)	169, 466, 524
AfiI	CCNNNNNNNGG	4 cut(s)	93, 291, 323, 443
AgsI	TTSAA	3 cut(s)	75, 196, 485
AluBI	AGCT	3 cut(s)	262, 488, 509
AluI	AGCT	3 cut(s)	262, 488, 509
Alw26I	GTCTC	3 cut(s)	102, 233, 545
AlwI	GGATC	3 cut(s)	22, 229, 747
AoxI	GGCC	2 cut(s)	95, 516
ApeKI	GCWGC	2 cut(s)	488, 509
ApoI	RAATTY	6 cut(s)	69, 172, 200, 367, 580, 685
Asp700I	GAANNNNTTC	1 cut(s)	200
Asp718I	GGTACC	1 cut(s)	464
AspS9I	GGNCC	3 cut(s)	96, 359, 516
AsuHPI	GGTGA	2 cut(s)	426, 694
AvaII	GGWCC	1 cut(s)	359
AxyI	CCTNAGG	1 cut(s)	672
BanI	GGYRCC	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	51
BbvI	GCAGC	2 cut(s)	475, 496
BccI	CCATC	2 cut(s)	212, 284
BcgI	CGANNNNNNTGC	4 cut(s)	491, 525, 585, 619
BcoDI	GTCTC	3 cut(s)	102, 233, 545
BfaI	CTAG	2 cut(s)	275, 461
BfmI	CTRYAG	2 cut(s)	382, 630
BfuAI	ACCTGC	1 cut(s)	623
BisI	GCNGC	2 cut(s)	489, 510
BlsI	GCNGC	2 cut(s)	490, 511
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	3 cut(s)	96, 359, 516
BmiI	GGNNCC	4 cut(s)	98, 466, 529, 609
BmsI	GCATC	1 cut(s)	329
BpmI	CTGGAG	1 cut(s)	550
BpuEI	CTTGAG	1 cut(s)	97
Bsa29I	ATCGAT	1 cut(s)	723
BsaAI	YACGTR	1 cut(s)	703
BsaBI	GATNNNNATC	2 cut(s)	729, 744
BsaJI	CCNNGG	2 cut(s)	321, 753
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 291, 323, 443
Bse1I	ACTGG	1 cut(s)	567
Bse21I	CCTNAGG	1 cut(s)	672
Bse8I	GATNNNNATC	2 cut(s)	729, 744
BseCI	ATCGAT	1 cut(s)	723
BseDI	CCNNGG	2 cut(s)	321, 753
BseGI	GGATG	4 cut(s)	223, 281, 344, 766
BseJI	GATNNNNATC	2 cut(s)	729, 744
BseLI	CCNNNNNNNGG	4 cut(s)	93, 291, 323, 443
BseMII	CTCAG	4 cut(s)	228, 354, 648, 686
BseNI	ACTGG	1 cut(s)	567
BseXI	GCAGC	2 cut(s)	475, 496
BseYI	CCCAGC	1 cut(s)	118
BshFI	GGCC	2 cut(s)	97, 518
BshNI	GGYRCC	1 cut(s)	464
BshVI	ATCGAT	1 cut(s)	723
BslFI	GGGAC	1 cut(s)	77
BslI	CCNNNNNNNGG	4 cut(s)	93, 291, 323, 443
BsmAI	GTCTC	3 cut(s)	102, 233, 545
BsmBI	CGTCTC	1 cut(s)	545
BsmFI	GGGAC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	97, 518
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	5 cut(s)	14, 221, 561, 724, 739
BspACI	CCGC	1 cut(s)	430
BspANI	GGCC	2 cut(s)	97, 518
BspCNI	CTCAG	4 cut(s)	229, 355, 649, 685
BspDI	ATCGAT	1 cut(s)	723
BspLI	GGNNCC	4 cut(s)	98, 466, 529, 609
BspMAI	CTGCAG	1 cut(s)	634
BspMI	ACCTGC	1 cut(s)	623
BspPI	GGATC	3 cut(s)	22, 229, 747
BspT107I	GGYRCC	1 cut(s)	464
BsrBI	CCGCTC	1 cut(s)	432
BsrI	ACTGG	1 cut(s)	567
BssECI	CCNNGG	2 cut(s)	321, 753
BssMI	GATC	5 cut(s)	14, 221, 561, 724, 739
BssT1I	CCWWGG	1 cut(s)	321
Bst4CI	ACNGT	1 cut(s)	527
BstBAI	YACGTR	1 cut(s)	703
BstDEI	CTNAG	5 cut(s)	237, 330, 363, 657, 672
BstF5I	GGATG	4 cut(s)	223, 281, 344, 766
BstKTI	GATC	5 cut(s)	17, 224, 564, 727, 742
BstMAI	GTCTC	3 cut(s)	102, 233, 545
BstMBI	GATC	5 cut(s)	14, 221, 561, 724, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 485, 494, 515
BstSFI	CTRYAG	2 cut(s)	382, 630
BstV1I	GCAGC	2 cut(s)	475, 496
BstX2I	RGATCY	3 cut(s)	14, 221, 739
BstYI	RGATCY	3 cut(s)	14, 221, 739
Bsu15I	ATCGAT	1 cut(s)	723
Bsu36I	CCTNAGG	1 cut(s)	672
BsuRI	GGCC	2 cut(s)	97, 518
BsuTUI	ATCGAT	1 cut(s)	723
BtsCI	GGATG	4 cut(s)	223, 281, 344, 766
BtsIMutI	CAGTG	1 cut(s)	711
BveI	ACCTGC	1 cut(s)	623
Cfr13I	GGNCC	3 cut(s)	96, 359, 516
ClaI	ATCGAT	1 cut(s)	723
Csp6I	GTAC	3 cut(s)	168, 465, 523
CviAII	CATG	4 cut(s)	44, 343, 405, 520
CviQI	GTAC	3 cut(s)	168, 465, 523
DdeI	CTNAG	5 cut(s)	237, 330, 363, 657, 672
DpnI	GATC	5 cut(s)	16, 223, 563, 726, 741
DpnII	GATC	5 cut(s)	14, 221, 561, 724, 739
DraIII	CACNNNGTG	1 cut(s)	706
Eco130I	CCWWGG	1 cut(s)	321
Eco24I	GRGCYC	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	359
Eco81I	CCTNAGG	1 cut(s)	672
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	2 cut(s)	367, 685
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	321
Esp3I	CGTCTC	1 cut(s)	545
FaeI	CATG	4 cut(s)	47, 346, 408, 523
FaiI	YATR	8 cut(s)	45, 59, 185, 207, 344, 406, 521, 750
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FaqI	GGGAC	1 cut(s)	77
FatI	CATG	4 cut(s)	43, 342, 404, 519
Fnu4HI	GCNGC	2 cut(s)	489, 510
FokI	GGATG	3 cut(s)	230, 268, 351
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	2 cut(s)	489, 510
FspBI	CTAG	2 cut(s)	275, 461
GluI	GCNGC	2 cut(s)	489, 510
GsaI	CCCAGC	1 cut(s)	122
GsuI	CTGGAG	1 cut(s)	550
HaeIII	GGCC	2 cut(s)	97, 518
Hin1II	CATG	4 cut(s)	47, 346, 408, 523
HinfI	GANTC	5 cut(s)	110, 124, 241, 278, 641
HphI	GGTGA	2 cut(s)	426, 694
Hpy166II	GTNNAC	3 cut(s)	212, 299, 709
Hpy188I	TCNGA	3 cut(s)	552, 640, 658
Hpy188III	TCNNGA	3 cut(s)	275, 372, 674
Hpy8I	GTNNAC	3 cut(s)	212, 299, 709
HpyAV	CCTTC	3 cut(s)	328, 547, 621
HpyCH4III	ACNGT	1 cut(s)	527
HpyCH4IV	ACGT	1 cut(s)	702
HpyCH4V	TGCA	6 cut(s)	57, 342, 422, 479, 512, 632
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 485, 494, 515
HpyF3I	CTNAG	5 cut(s)	237, 330, 363, 657, 672
HpySE526I	ACGT	1 cut(s)	702
Hsp92II	CATG	4 cut(s)	47, 346, 408, 523
KpnI	GGTACC	1 cut(s)	468
Kzo9I	GATC	5 cut(s)	14, 221, 561, 724, 739
LmnI	GCTCC	2 cut(s)	131, 613
Lsp1109I	GCAGC	2 cut(s)	475, 496
LweI	GCATC	1 cut(s)	329
MaeI	CTAG	2 cut(s)	275, 461
MaeII	ACGT	1 cut(s)	702
MaeIII	GTNAC	6 cut(s)	125, 377, 556, 569, 622, 650
MalI	GATC	5 cut(s)	16, 223, 563, 726, 741
MbiI	CCGCTC	1 cut(s)	432
MboI	GATC	5 cut(s)	14, 221, 561, 724, 739
MboII	GAAGA	1 cut(s)	576
MfeI	CAATTG	2 cut(s)	101, 480
MflI	RGATCY	3 cut(s)	14, 221, 739
MhlI	GDGCHC	1 cut(s)	51
MluCI	AATT	9 cut(s)	69, 88, 101, 172, 200, 367, 480, 580, 685
MlyI	GAGTC	3 cut(s)	104, 133, 235
MmeI	TCCRAC	1 cut(s)	497
MnlI	CCTC	9 cut(s)	350, 380, 393, 541, 652, 681, 708, 748, 751
Mph1103I	ATGCAT	1 cut(s)	344
MroXI	GAANNNNTTC	1 cut(s)	200
MseI	TTAA	1 cut(s)	264
MunI	CAATTG	2 cut(s)	101, 480
MwoI	GCNNNNNNNGC	4 cut(s)	103, 485, 494, 515
NdeII	GATC	5 cut(s)	14, 221, 561, 724, 739
NlaIII	CATG	4 cut(s)	47, 346, 408, 523
NlaIV	GGNNCC	4 cut(s)	98, 466, 529, 609
NmuCI	GTSAC	3 cut(s)	125, 622, 650
NsiI	ATGCAT	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	278, 641
PkrI	GCNGC	2 cut(s)	490, 511
PleI	GAGTC	3 cut(s)	104, 132, 235
PpsI	GAGTC	3 cut(s)	104, 132, 235
Ppu21I	YACGTR	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
PspFI	CCCAGC	1 cut(s)	118
PspN4I	GGNNCC	4 cut(s)	98, 466, 529, 609
PspPI	GGNCC	3 cut(s)	96, 359, 516
PspPPI	RGGWCCY	1 cut(s)	359
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PstI	CTGCAG	1 cut(s)	634
PsuI	RGATCY	3 cut(s)	14, 221, 739
RsaI	GTAC	3 cut(s)	169, 466, 524
RsaNI	GTAC	3 cut(s)	168, 465, 523
SaqAI	TTAA	1 cut(s)	264
SatI	GCNGC	2 cut(s)	489, 510
Sau3AI	GATC	5 cut(s)	14, 221, 561, 724, 739
Sau96I	GGNCC	3 cut(s)	96, 359, 516
SchI	GAGTC	3 cut(s)	104, 133, 235
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	1 cut(s)	329
SfcI	CTRYAG	2 cut(s)	382, 630
SinI	GGWCC	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	9 cut(s)	69, 88, 101, 172, 200, 367, 480, 580, 685
SsiI	CCGC	1 cut(s)	430
SspMI	CTAG	2 cut(s)	275, 461
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	527
TaiI	ACGT	1 cut(s)	705
TaqI	TCGA	2 cut(s)	373, 723
TasI	AATT	9 cut(s)	69, 88, 101, 172, 200, 367, 480, 580, 685
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	2 cut(s)	278, 641
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	3 cut(s)	125, 622, 650
TseI	GCWGC	2 cut(s)	488, 509
Tsp45I	GTSAC	3 cut(s)	125, 622, 650
TspDTI	ATGAA	4 cut(s)	17, 32, 359, 519
TspGWI	ACGGA	1 cut(s)	144
TspRI	CASTG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	6 cut(s)	69, 172, 200, 367, 580, 685
XbaI	TCTAGA	1 cut(s)	274
XcmI	CCANNNNNNNNNTGG	1 cut(s)	33
XmnI	GAANNNNTTC	1 cut(s)	200
XspI	CTAG	2 cut(s)	275, 461
Zsp2I	ATGCAT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.