Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Reverse (-)

7361577 .. 7363808

Gene Structure 2232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1089700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGCCCAAGTTGGTCAAGACCGATACAAGACGGGATGGACCCAATCCTGTGGCTGAGACTCTTGCGAAGTGGAAAGAGTACAACGACCATTTGGATTCATGCAATGATGAGGGTGGACCGTTCCGTAGAGTACCAGCCAAGGGATCAAAAAAGGGATGTATGAAGGGTAAGGGAGGACCTGAGAACTCTCGCTGTAACTACAGAGGTGTTAGACAGAGGACATGGGGCAAGTGGGTTGCAGAGATCCGGACACCCAACAGGGGAAGTAGGCTCTGGCTAGGCACTTTTCCAACTGCCATTGAAGCTGCCCTTGCTTATGATGAAGCGGCAAGGGCCATGTATAGTTCTGCTGCCCGTCTTAACTTCCCTAATATCTCAATTTCCACTTTATCAAAGGATTCTTCATCGACAAAAACTCTGTCCTCCCTTCCCTTGTTAGCATCATCTGCAGGTTCAGAATCCTCAGCGAGATCAGACCACTCGGGGGATTGTGCCGCTCAGGATGAGGATCAGGCGAATGGTCTTTCATCTAATGTAGAGAATGATGATACGACGAATGTAGATCAAACAAATGAGGATCGAGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

198

Amino Acids

21.43

Weight (kDa)

5.81

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	66 - 115	2.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	497
AccIII	TCCGGA	1 cut(s)	246
AciI	CCGC	2 cut(s)	326, 495
AclWI	GGATC	4 cut(s)	151, 238, 516, 585
AfaI	GTAC	2 cut(s)	80, 132
AfiI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
AgsI	TTSAA	1 cut(s)	302
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	4 cut(s)	151, 238, 516, 585
Ama87I	CYCGRG	1 cut(s)	481
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	305, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspS9I	GGNCC	4 cut(s)	38, 116, 176, 333
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	3 cut(s)	38, 116, 176
BbvCI	CCTCAGC	1 cut(s)	463
BbvI	GCAGC	2 cut(s)	292, 337
BccI	CCATC	1 cut(s)	29
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	199, 447
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	4 cut(s)	306, 327, 351, 495
BlsI	GCNGC	4 cut(s)	307, 328, 352, 496
Bme18I	GGWCC	3 cut(s)	38, 116, 176
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	4 cut(s)	38, 116, 176, 333
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	449
Bpu10I	CCTNAGC	2 cut(s)	463, 498
BsaBI	GATNNNNATC	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 260, 484
Bse3DI	GCAATG	1 cut(s)	109
Bse8I	GATNNNNATC	1 cut(s)	507
BseAI	TCCGGA	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	40, 161, 508
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	4 cut(s)	45, 171, 477, 512
BseXI	GCAGC	2 cut(s)	292, 337
BshFI	GGCC	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	335
BsoBI	CYCGRG	1 cut(s)	481
Bsp13I	TCCGGA	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	143, 243, 470, 508, 562, 577
BspACI	CCGC	2 cut(s)	326, 495
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	46, 172, 476, 511
BspEI	TCCGGA	1 cut(s)	246
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	4 cut(s)	151, 238, 516, 585
BsrBI	CCGCTC	1 cut(s)	497
BsrDI	GCAATG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	6 cut(s)	143, 243, 470, 508, 562, 577
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstDEI	CTNAG	4 cut(s)	54, 180, 463, 498
BstF5I	GGATG	3 cut(s)	40, 161, 508
BstKTI	GATC	6 cut(s)	146, 246, 473, 511, 565, 580
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	6 cut(s)	143, 243, 470, 508, 562, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
BstSFI	CTRYAG	2 cut(s)	199, 447
BstV1I	GCAGC	2 cut(s)	292, 337
BstX2I	RGATCY	1 cut(s)	243
BstXI	CCANNNNNNTGG	1 cut(s)	49
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	40, 161, 508
BveI	ACCTGC	1 cut(s)	440
Cfr13I	GGNCC	4 cut(s)	38, 116, 176, 333
Csp6I	GTAC	2 cut(s)	79, 131
CviAII	CATG	3 cut(s)	99, 222, 337
CviJI	RGCY	6 cut(s)	53, 137, 271, 277, 305, 335
CviKI_1	RGCY	6 cut(s)	53, 137, 271, 277, 305, 335
CviQI	GTAC	2 cut(s)	79, 131
DdeI	CTNAG	4 cut(s)	54, 180, 463, 498
DpnI	GATC	6 cut(s)	145, 245, 472, 510, 564, 579
DpnII	GATC	6 cut(s)	143, 243, 470, 508, 562, 577
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	3 cut(s)	38, 116, 176
Eco88I	CYCGRG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	102, 225, 340
FaiI	YATR	6 cut(s)	100, 161, 223, 318, 338, 342
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	3 cut(s)	98, 221, 336
Fnu4HI	GCNGC	4 cut(s)	306, 327, 351, 495
FokI	GGATG	3 cut(s)	47, 168, 515
Fsp4HI	GCNGC	4 cut(s)	306, 327, 351, 495
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	4 cut(s)	306, 327, 351, 495
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	3 cut(s)	102, 225, 340
HinfI	GANTC	4 cut(s)	58, 95, 398, 458
HpaII	CCGG	1 cut(s)	247
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	457, 475
Hpy188III	TCNNGA	4 cut(s)	16, 247, 500, 581
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	157, 437
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	102, 239, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
HpyF3I	CTNAG	4 cut(s)	54, 180, 463, 498
Hsp92II	CATG	3 cut(s)	102, 225, 340
Kpn2I	TCCGGA	1 cut(s)	246
Kzo9I	GATC	6 cut(s)	143, 243, 470, 508, 562, 577
LpnPI	CCDG	9 cut(s)	60, 147, 192, 244, 259, 260, 435, 485, 497
Lsp1109I	GCAGC	2 cut(s)	292, 337
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	6 cut(s)	145, 245, 472, 510, 564, 579
MbiI	CCGCTC	1 cut(s)	497
MboI	GATC	6 cut(s)	143, 243, 470, 508, 562, 577
MboII	GAAGA	1 cut(s)	393
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	8 cut(s)	103, 167, 197, 210, 433, 472, 499, 568
MroI	TCCGGA	1 cut(s)	246
MseI	TTAA	1 cut(s)	360
MspI	CCGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
NdeII	GATC	6 cut(s)	143, 243, 470, 508, 562, 577
NlaIII	CATG	3 cut(s)	102, 225, 340
NlaIV	GGNNCC	1 cut(s)	40
PfeI	GAWTC	3 cut(s)	95, 398, 458
PkrI	GCNGC	4 cut(s)	307, 328, 352, 496
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	4 cut(s)	38, 116, 176, 333
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	2 cut(s)	80, 132
RsaNI	GTAC	2 cut(s)	79, 131
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	4 cut(s)	306, 327, 351, 495
Sau3AI	GATC	6 cut(s)	143, 243, 470, 508, 562, 577
Sau96I	GGNCC	4 cut(s)	38, 116, 176, 333
SchI	GAGTC	1 cut(s)	52
SetI	ASST	4 cut(s)	181, 208, 307, 454
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	2 cut(s)	199, 447
SinI	GGWCC	3 cut(s)	38, 116, 176
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	2 cut(s)	326, 495
SspMI	CTAG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	407, 580
TaqII	GACCGA	1 cut(s)	35
TasI	AATT	1 cut(s)	378
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	2 cut(s)	329, 497
TfiI	GAWTC	3 cut(s)	95, 398, 458
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseI	GCWGC	2 cut(s)	305, 350
TspDTI	ATGAA	5 cut(s)	87, 176, 336, 393, 516
TspGWI	ACGGA	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	38, 116, 176
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.