Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Forward (+)

73125845 .. 73128351

Gene Structure 2507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021227

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGAAAAAGAATGGATCTTTCAGCCCAAAGACTCAAGGCTGGGGGAGTCACGGAGCAGAACAAGGTATCTCATTGTATTCCCTGTTCAGTACAAATTTGGATTGTATGACCAAGTTGAAAAAAGTCCATAGTAAACAGGATGGATCTAATCCTGTGGCTGAGACTCTTGCAAAGTGGAAAGAGTTTAACGACCATCTAGAATCATCCAATGGTGGGAGTAAACCAACTCGCAAAGTTCCTGCCAAGGGGTCTAAGAAGGGATGCATGAAAGGTAAGGGAGGACCTGAGAATTCTCGATGTAACTACAGAGGTGTTAGGCAGAGGACATGGGGCAAGTGGGTTGCAGAAATCCGCTCGCCAAATAGGGGAAGTAGGCTCTGGCTGGGTACCTTTCCAACTGCAATTGAAGCTGCTCTTGCCTACGATGAAGCTGCAAGGGCCATGTACGGTTCCTCTGCCCGTCTCAACTTTCCGAAGGTTACGATCTCCAGTTACTCAACAAATTCTTCTTGTAGAGCAACTCTATCGGCTCCTTCCTGTGTAGTGACTTCTGCAGGTTCAGAATCATCAGGTCACTCTGAGGATTTTTCGCCTCAGGATAAGATTGGTATCTACATACAATTTCTCGACTTTGCCTATGCCAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

217

Amino Acids

23.48

Weight (kDa)

9.68

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	101 - 150	2.2e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	545
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AccBSI	CCGCTC	1 cut(s)	354
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	2 cut(s)	22, 151
AcsI	RAATTY	3 cut(s)	94, 289, 502
AfaI	GTAC	3 cut(s)	91, 388, 446
AfiI	CCNNNNNNNGG	3 cut(s)	213, 245, 365
AgsI	TTSAA	2 cut(s)	118, 407
AluBI	AGCT	2 cut(s)	410, 431
AluI	AGCT	2 cut(s)	410, 431
Alw26I	GTCTC	2 cut(s)	155, 467
AlwI	GGATC	2 cut(s)	22, 151
AoxI	GGCC	1 cut(s)	438
ApeKI	GCWGC	2 cut(s)	410, 431
ApoI	RAATTY	3 cut(s)	94, 289, 502
Asp718I	GGTACC	1 cut(s)	386
AspS9I	GGNCC	2 cut(s)	281, 438
AvaII	GGWCC	1 cut(s)	281
AxyI	CCTNAGG	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	386
BbvI	GCAGC	2 cut(s)	397, 418
BccI	CCATC	2 cut(s)	134, 201
BcgI	CGANNNNNNTGC	4 cut(s)	413, 447, 507, 541
BcoDI	GTCTC	2 cut(s)	155, 467
BfaI	CTAG	1 cut(s)	197
BfmI	CTRYAG	2 cut(s)	304, 552
BfuAI	ACCTGC	1 cut(s)	545
BisI	GCNGC	2 cut(s)	411, 432
BlsI	GCNGC	2 cut(s)	412, 433
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	2 cut(s)	281, 438
BmiI	GGNNCC	3 cut(s)	388, 451, 531
BmsI	GCATC	1 cut(s)	251
BpmI	CTGGAG	1 cut(s)	472
BpuEI	CTTGAG	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	3 cut(s)	213, 245, 365
Bse1I	ACTGG	1 cut(s)	489
Bse21I	CCTNAGG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	608
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	3 cut(s)	145, 203, 266
BseJI	GATNNNNATC	1 cut(s)	608
BseLI	CCNNNNNNNGG	3 cut(s)	213, 245, 365
BseMII	CTCAG	4 cut(s)	150, 276, 570, 608
BseNI	ACTGG	1 cut(s)	489
BseXI	GCAGC	2 cut(s)	397, 418
BseYI	CCCAGC	2 cut(s)	39, 382
BshFI	GGCC	1 cut(s)	440
BshNI	GGYRCC	1 cut(s)	386
BslI	CCNNNNNNNGG	3 cut(s)	213, 245, 365
BsmAI	GTCTC	2 cut(s)	155, 467
BsmBI	CGTCTC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	440
Bsp143I	GATC	3 cut(s)	14, 143, 483
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	1 cut(s)	440
BspCNI	CTCAG	4 cut(s)	151, 277, 571, 607
BspLI	GGNNCC	3 cut(s)	388, 451, 531
BspMAI	CTGCAG	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	545
BspPI	GGATC	2 cut(s)	22, 151
BspT107I	GGYRCC	1 cut(s)	386
BsrBI	CCGCTC	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	489
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	3 cut(s)	14, 143, 483
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	356
BstDEI	CTNAG	5 cut(s)	159, 252, 285, 579, 594
BstF5I	GGATG	3 cut(s)	145, 203, 266
BstKTI	GATC	3 cut(s)	17, 146, 486
BstMAI	GTCTC	2 cut(s)	155, 467
BstMBI	GATC	3 cut(s)	14, 143, 483
BstMWI	GCNNNNNNNGC	3 cut(s)	407, 416, 437
BstSFI	CTRYAG	2 cut(s)	304, 552
BstV1I	GCAGC	2 cut(s)	397, 418
BstX2I	RGATCY	2 cut(s)	14, 143
BstYI	RGATCY	2 cut(s)	14, 143
Bsu36I	CCTNAGG	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	440
BtsCI	GGATG	3 cut(s)	145, 203, 266
BveI	ACCTGC	1 cut(s)	545
Cac8I	GCNNGC	1 cut(s)	356
Cfr13I	GGNCC	2 cut(s)	281, 438
Csp6I	GTAC	3 cut(s)	90, 387, 445
CviAII	CATG	3 cut(s)	265, 327, 442
CviJI	RGCY	9 cut(s)	24, 39, 158, 376, 382, 410, 431, 440, 530
CviKI_1	RGCY	9 cut(s)	24, 39, 158, 376, 382, 410, 431, 440, 530
CviQI	GTAC	3 cut(s)	90, 387, 445
DdeI	CTNAG	5 cut(s)	159, 252, 285, 579, 594
DpnI	GATC	3 cut(s)	16, 145, 485
DpnII	GATC	3 cut(s)	14, 143, 483
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	281
Eco81I	CCTNAGG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRI	GAATTC	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	3 cut(s)	268, 330, 445
FaiI	YATR	7 cut(s)	107, 129, 266, 328, 443, 617, 639
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	3 cut(s)	264, 326, 441
Fnu4HI	GCNGC	2 cut(s)	411, 432
FokI	GGATG	3 cut(s)	152, 190, 273
Fsp4HI	GCNGC	2 cut(s)	411, 432
FspBI	CTAG	1 cut(s)	197
GluI	GCNGC	2 cut(s)	411, 432
GsaI	CCCAGC	2 cut(s)	43, 386
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	1 cut(s)	440
Hin1II	CATG	3 cut(s)	268, 330, 445
HinfI	GANTC	5 cut(s)	31, 46, 163, 200, 563
Hpy166II	GTNNAC	2 cut(s)	134, 221
Hpy188I	TCNGA	3 cut(s)	474, 562, 580
Hpy188III	TCNNGA	4 cut(s)	197, 294, 596, 626
Hpy8I	GTNNAC	2 cut(s)	134, 221
HpyAV	CCTTC	3 cut(s)	250, 469, 543
HpyCH4III	ACNGT	1 cut(s)	449
HpyCH4V	TGCA	6 cut(s)	170, 264, 344, 401, 434, 554
HpyF10VI	GCNNNNNNNGC	3 cut(s)	407, 416, 437
HpyF3I	CTNAG	5 cut(s)	159, 252, 285, 579, 594
Hsp92II	CATG	3 cut(s)	268, 330, 445
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	14, 143, 483
LmnI	GCTCC	2 cut(s)	53, 535
Lsp1109I	GCAGC	2 cut(s)	397, 418
LweI	GCATC	1 cut(s)	251
MaeI	CTAG	1 cut(s)	197
MaeIII	GTNAC	6 cut(s)	47, 299, 478, 491, 544, 572
MalI	GATC	3 cut(s)	16, 145, 485
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	3 cut(s)	14, 143, 483
MboII	GAAGA	1 cut(s)	498
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	2 cut(s)	14, 143
MluCI	AATT	6 cut(s)	94, 289, 402, 502, 620, 646
MlyI	GAGTC	3 cut(s)	25, 55, 157
MmeI	TCCRAC	1 cut(s)	419
MnlI	CCTC	6 cut(s)	272, 302, 315, 463, 574, 603
Mph1103I	ATGCAT	1 cut(s)	266
MseI	TTAA	1 cut(s)	186
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	3 cut(s)	407, 416, 437
NdeII	GATC	3 cut(s)	14, 143, 483
NlaIII	CATG	3 cut(s)	268, 330, 445
NlaIV	GGNNCC	3 cut(s)	388, 451, 531
NmuCI	GTSAC	3 cut(s)	47, 544, 572
NsiI	ATGCAT	1 cut(s)	266
PfeI	GAWTC	2 cut(s)	200, 563
PkrI	GCNGC	2 cut(s)	412, 433
PleI	GAGTC	3 cut(s)	25, 54, 157
PpsI	GAGTC	3 cut(s)	25, 54, 157
PpuMI	RGGWCCY	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	281
PspFI	CCCAGC	2 cut(s)	39, 382
PspN4I	GGNNCC	3 cut(s)	388, 451, 531
PspPI	GGNCC	2 cut(s)	281, 438
PspPPI	RGGWCCY	1 cut(s)	281
PsrI	GAACNNNNNNTAC	2 cut(s)	68, 100
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	2 cut(s)	14, 143
RsaI	GTAC	3 cut(s)	91, 388, 446
RsaNI	GTAC	3 cut(s)	90, 387, 445
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	411, 432
Sau3AI	GATC	3 cut(s)	14, 143, 483
Sau96I	GGNCC	2 cut(s)	281, 438
SchI	GAGTC	3 cut(s)	25, 55, 157
SfaNI	GCATC	1 cut(s)	251
SfcI	CTRYAG	2 cut(s)	304, 552
SinI	GGWCC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	33
SmoI	CTYRAG	1 cut(s)	33
Sse9I	AATT	6 cut(s)	94, 289, 402, 502, 620, 646
SsiI	CCGC	1 cut(s)	352
SspMI	CTAG	1 cut(s)	197
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	449
TaqI	TCGA	2 cut(s)	295, 627
TasI	AATT	6 cut(s)	94, 289, 402, 502, 620, 646
TatI	WGTACW	1 cut(s)	89
TfiI	GAWTC	2 cut(s)	200, 563
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseFI	GTSAC	3 cut(s)	47, 544, 572
TseI	GCWGC	2 cut(s)	410, 431
Tsp45I	GTSAC	3 cut(s)	47, 544, 572
TspDTI	ATGAA	3 cut(s)	17, 281, 441
TspGWI	ACGGA	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	3 cut(s)	94, 289, 502
XbaI	TCTAGA	1 cut(s)	196
XspI	CTAG	1 cut(s)	197
Zsp2I	ATGCAT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.