Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Reverse (-)

11507823 .. 11510076

Gene Structure 2254 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00089550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGACCAAGTTGAAAAAACTCCATAGTAAACAGGATGGATCTAATCCTGTGGCTGAGACTCTTGCGAAGTGGAAAGAGTTTAACGACCATCTAGAATCATCCAATGATGGGAGTAAACCAACTCGCAAAGTTCCTGCCAAGGGGTCTAAGAAGGGATGCATGAAAGGTAAGGGAGGACCTGAGAATTCTCGATGTAACTACAGAGGTGTTAGGCAGAGGACATGGGGCAAGTGGGTTGCAGAAATCCGCTCACCAAATAGGGGAAGTAGGCTCTGGCTAGGTACCTTTCCAACTGCAATTGAAGCTGCTCTTGCCTATGATGAAGCTGCAAGGGCCATGTACGGTTCCTCTGCCCGTCTCAACTTTCCGAAGGTTATGATCTCCAGTTACTCAACAAATTCTTCTTGTAGAGCAACTCTGTCGGCTCCTTCCTGTGTAGTGACTTCTGCAGGTTCAGAATCATCAGGTCACTTTGAGGATTTTTCGCCTCAGGATAAGGTGAATTCTCATTCCCCTCACGTAGTGAACACTGATGTCATCGATCTAAATCAAATGGATCTAAATCATACTGAGGAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

194

Amino Acids

21.31

Weight (kDa)

9.03

Isoelectric Point (pI)

45.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	66 - 115	1.8e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	281
AccBSI	CCGCTC	1 cut(s)	249
AciI	CCGC	1 cut(s)	247
AclWI	GGATC	2 cut(s)	46, 564
AcsI	RAATTY	3 cut(s)	184, 397, 502
AdeI	CACNNNGTG	1 cut(s)	523
AfaI	GTAC	2 cut(s)	283, 341
AfiI	CCNNNNNNNGG	3 cut(s)	108, 140, 260
AgsI	TTSAA	2 cut(s)	13, 302
AluBI	AGCT	2 cut(s)	305, 326
AluI	AGCT	2 cut(s)	305, 326
Alw26I	GTCTC	2 cut(s)	50, 362
AlwI	GGATC	2 cut(s)	46, 564
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	305, 326
ApoI	RAATTY	3 cut(s)	184, 397, 502
Asp718I	GGTACC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	176, 333
AsuHPI	GGTGA	2 cut(s)	243, 511
AvaII	GGWCC	1 cut(s)	176
AxyI	CCTNAGG	1 cut(s)	489
BanI	GGYRCC	1 cut(s)	281
BbvI	GCAGC	2 cut(s)	292, 313
BccI	CCATC	3 cut(s)	29, 96, 101
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BcoDI	GTCTC	2 cut(s)	50, 362
BfaI	CTAG	2 cut(s)	92, 278
BfmI	CTRYAG	2 cut(s)	199, 447
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	306, 327
BlsI	GCNGC	2 cut(s)	307, 328
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	176, 333
BmiI	GGNNCC	3 cut(s)	283, 346, 426
BmsI	GCATC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	540
BsaAI	YACGTR	1 cut(s)	520
BsaBI	GATNNNNATC	2 cut(s)	546, 561
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 140, 260
Bse1I	ACTGG	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	489
Bse8I	GATNNNNATC	2 cut(s)	546, 561
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	4 cut(s)	40, 98, 161, 583
BseJI	GATNNNNATC	2 cut(s)	546, 561
BseLI	CCNNNNNNNGG	3 cut(s)	108, 140, 260
BseMII	CTCAG	4 cut(s)	45, 171, 503, 561
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	2 cut(s)	292, 313
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	540
BslI	CCNNNNNNNGG	3 cut(s)	108, 140, 260
BsmAI	GTCTC	2 cut(s)	50, 362
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	335
Bsp143I	GATC	4 cut(s)	38, 378, 541, 556
BspACI	CCGC	1 cut(s)	247
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	4 cut(s)	46, 172, 502, 562
BspDI	ATCGAT	1 cut(s)	540
BspLI	GGNNCC	3 cut(s)	283, 346, 426
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	46, 564
BspT107I	GGYRCC	1 cut(s)	281
BsrBI	CCGCTC	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	4 cut(s)	38, 378, 541, 556
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	344
BstBAI	YACGTR	1 cut(s)	520
BstDEI	CTNAG	5 cut(s)	54, 147, 180, 489, 570
BstF5I	GGATG	4 cut(s)	40, 98, 161, 583
BstKTI	GATC	4 cut(s)	41, 381, 544, 559
BstMAI	GTCTC	2 cut(s)	50, 362
BstMBI	GATC	4 cut(s)	38, 378, 541, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 311, 332
BstSFI	CTRYAG	2 cut(s)	199, 447
BstV1I	GCAGC	2 cut(s)	292, 313
BstX2I	RGATCY	2 cut(s)	38, 556
BstYI	RGATCY	2 cut(s)	38, 556
Bsu15I	ATCGAT	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	540
BtsCI	GGATG	4 cut(s)	40, 98, 161, 583
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	440
Cfr13I	GGNCC	2 cut(s)	176, 333
ClaI	ATCGAT	1 cut(s)	540
Csp6I	GTAC	2 cut(s)	282, 340
CviAII	CATG	3 cut(s)	160, 222, 337
CviJI	RGCY	7 cut(s)	53, 271, 277, 305, 326, 335, 425
CviKI_1	RGCY	7 cut(s)	53, 271, 277, 305, 326, 335, 425
CviQI	GTAC	2 cut(s)	282, 340
DdeI	CTNAG	5 cut(s)	54, 147, 180, 489, 570
DpnI	GATC	4 cut(s)	40, 380, 543, 558
DpnII	GATC	4 cut(s)	38, 378, 541, 556
DraIII	CACNNNGTG	1 cut(s)	523
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	176
Eco81I	CCTNAGG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRI	GAATTC	2 cut(s)	184, 502
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	3 cut(s)	163, 225, 340
FaiI	YATR	7 cut(s)	24, 161, 223, 318, 338, 377, 567
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	3 cut(s)	159, 221, 336
Fnu4HI	GCNGC	2 cut(s)	306, 327
FokI	GGATG	3 cut(s)	47, 85, 168
Fsp4HI	GCNGC	2 cut(s)	306, 327
FspBI	CTAG	2 cut(s)	92, 278
GluI	GCNGC	2 cut(s)	306, 327
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	335
Hin1II	CATG	3 cut(s)	163, 225, 340
HinfI	GANTC	3 cut(s)	58, 95, 458
HphI	GGTGA	2 cut(s)	243, 511
Hpy166II	GTNNAC	3 cut(s)	29, 116, 526
Hpy188I	TCNGA	2 cut(s)	369, 457
Hpy188III	TCNNGA	3 cut(s)	92, 189, 491
Hpy8I	GTNNAC	3 cut(s)	29, 116, 526
HpyAV	CCTTC	3 cut(s)	145, 364, 438
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4IV	ACGT	1 cut(s)	519
HpyCH4V	TGCA	5 cut(s)	159, 239, 296, 329, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 311, 332
HpyF3I	CTNAG	5 cut(s)	54, 147, 180, 489, 570
HpySE526I	ACGT	1 cut(s)	519
Hsp92II	CATG	3 cut(s)	163, 225, 340
KpnI	GGTACC	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	38, 378, 541, 556
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	2 cut(s)	292, 313
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	2 cut(s)	92, 278
MaeII	ACGT	1 cut(s)	519
MaeIII	GTNAC	4 cut(s)	194, 386, 439, 467
MalI	GATC	4 cut(s)	40, 380, 543, 558
MbiI	CCGCTC	1 cut(s)	249
MboI	GATC	4 cut(s)	38, 378, 541, 556
MboII	GAAGA	1 cut(s)	393
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	2 cut(s)	38, 556
MluCI	AATT	4 cut(s)	184, 297, 397, 502
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	9 cut(s)	167, 197, 210, 358, 469, 498, 525, 565, 568
Mph1103I	ATGCAT	1 cut(s)	161
MseI	TTAA	1 cut(s)	81
MunI	CAATTG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	302, 311, 332
NdeII	GATC	4 cut(s)	38, 378, 541, 556
NlaIII	CATG	3 cut(s)	163, 225, 340
NlaIV	GGNNCC	3 cut(s)	283, 346, 426
NmuCI	GTSAC	2 cut(s)	439, 467
NsiI	ATGCAT	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	95, 458
PkrI	GCNGC	2 cut(s)	307, 328
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	520
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
PspN4I	GGNNCC	3 cut(s)	283, 346, 426
PspPI	GGNCC	2 cut(s)	176, 333
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	38, 556
RsaI	GTAC	2 cut(s)	283, 341
RsaNI	GTAC	2 cut(s)	282, 340
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	306, 327
Sau3AI	GATC	4 cut(s)	38, 378, 541, 556
Sau96I	GGNCC	2 cut(s)	176, 333
SchI	GAGTC	1 cut(s)	52
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	2 cut(s)	199, 447
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	4 cut(s)	184, 297, 397, 502
SsiI	CCGC	1 cut(s)	247
SspMI	CTAG	2 cut(s)	92, 278
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	344
TaiI	ACGT	1 cut(s)	522
TaqI	TCGA	2 cut(s)	190, 540
TasI	AATT	4 cut(s)	184, 297, 397, 502
TfiI	GAWTC	2 cut(s)	95, 458
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	1 cut(s)	535
TseFI	GTSAC	2 cut(s)	439, 467
TseI	GCWGC	2 cut(s)	305, 326
Tsp45I	GTSAC	2 cut(s)	439, 467
TspDTI	ATGAA	2 cut(s)	176, 336
TspRI	CASTG	1 cut(s)	535
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	3 cut(s)	184, 397, 502
XbaI	TCTAGA	1 cut(s)	91
XspI	CTAG	2 cut(s)	92, 278
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.