Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Reverse (-)

16851434 .. 16852803

Gene Structure 1370 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCCCAGGAAACGGAAGTCTCGTGGAACACGAGATGTAGCTGAGATTCTAAGGAAATGGAGAGAGTACAATGAGCAGACCGAGGCAGATTCTTGCATCGATGGTGGTGGTTCAAAACCAATCCGAAAGGCTCCTCCAAAACGTTCGAGGAAGGGTTGTATGAAAGGTAAAGGTGGACCTGAAAATGGGATTTGTGACTATACAGGAGTTAGACAGAGGACATGGGGTAAATGGGTTGCTGAGATCCGTGAGCCAGGCCGAGGTGCTAAGTTATGGCTCGGTACTTTCTCTAGTTCATATGAAGCTGCATTGGCTTATGATGAGGCTTCCAAAGCTATTTACGGTCAGTCTGCCCGACTCAATCTTCCACTGCTGCCACTGTGTCAGGCTCGGTTACTGCATTTTCTGATGAATCTGAAGTTTGTGCACGTGAGGATACAAATGCAAGATCTGGTTTTGGTCAGGTCAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

157

Amino Acids

17.79

Weight (kDa)

10.02

Isoelectric Point (pI)

45.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	66 - 115	4.6e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	142
AclWI	GGATC	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	437
AcvI	CACGTG	1 cut(s)	430
AfaI	GTAC	2 cut(s)	68, 283
AfiI	CCNNNNNNNGG	3 cut(s)	12, 185, 260
AgsI	TTSAA	1 cut(s)	114
AjnI	CCWGG	2 cut(s)	5, 253
AluBI	AGCT	3 cut(s)	41, 305, 335
AluI	AGCT	3 cut(s)	41, 305, 335
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	1 cut(s)	24
Alw44I	GTGCAC	1 cut(s)	425
AlwI	GGATC	1 cut(s)	238
AoxI	GGCC	1 cut(s)	256
ApaLI	GTGCAC	1 cut(s)	425
ApeKI	GCWGC	2 cut(s)	305, 373
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	429
BauI	CACGAG	2 cut(s)	21, 30
BbrPI	CACGTG	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	2 cut(s)	292, 360
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	7, 255
BciVI	GTATCC	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	2 cut(s)	291, 472
BfuI	GTATCC	1 cut(s)	429
BglII	AGATCT	1 cut(s)	448
BisI	GCNGC	2 cut(s)	306, 374
BlsI	GCNGC	2 cut(s)	307, 375
Bme1390I	CCNGG	2 cut(s)	7, 255
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	132
BmrFI	CCNGG	2 cut(s)	7, 255
BmsI	GCATC	1 cut(s)	105
Bsa29I	ATCGAT	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	5, 81, 259
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 185, 260
BseBI	CCWGG	2 cut(s)	7, 255
BseCI	ATCGAT	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	5, 81, 259
BseLI	CCNNNNNNNGG	3 cut(s)	12, 185, 260
BseMII	CTCAG	2 cut(s)	33, 231
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	292, 360
BshFI	GGCC	1 cut(s)	258
BshVI	ATCGAT	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	429
BslI	CCNNNNNNNGG	3 cut(s)	12, 185, 260
BsmAI	GTCTC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	429
Bsp143I	GATC	2 cut(s)	243, 448
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	34, 232
BspDI	ATCGAT	1 cut(s)	99
BspLI	GGNNCC	1 cut(s)	132
BspPI	GGATC	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	5, 81, 259
BssMI	GATC	2 cut(s)	243, 448
BssSI	CACGAG	2 cut(s)	21, 30
Bst2BI	CACGAG	2 cut(s)	21, 30
Bst2UI	CCWGG	2 cut(s)	7, 255
Bst4CI	ACNGT	2 cut(s)	344, 381
BstBAI	YACGTR	1 cut(s)	430
BstDEI	CTNAG	4 cut(s)	42, 50, 240, 267
BstKTI	GATC	2 cut(s)	246, 451
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	243, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	311, 332
BstNI	CCWGG	2 cut(s)	7, 255
BstSCI	CCNGG	2 cut(s)	5, 253
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	292, 360
BstX2I	RGATCY	2 cut(s)	243, 448
BstYI	RGATCY	2 cut(s)	243, 448
Bsu15I	ATCGAT	1 cut(s)	99
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	258
BsuTUI	ATCGAT	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	2 cut(s)	368, 377
Cfr13I	GGNCC	1 cut(s)	176
ClaI	ATCGAT	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	67, 282
CviAII	CATG	1 cut(s)	222
CviQI	GTAC	2 cut(s)	67, 282
DdeI	CTNAG	4 cut(s)	42, 50, 240, 267
DpnI	GATC	2 cut(s)	245, 450
DpnII	GATC	2 cut(s)	243, 448
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	437
Eco72I	CACGTG	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	5, 253
FaeI	CATG	1 cut(s)	225
FaiI	YATR	7 cut(s)	161, 201, 223, 274, 298, 300, 318
FatI	CATG	1 cut(s)	221
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	306, 374
Fsp4HI	GCNGC	2 cut(s)	306, 374
FspBI	CTAG	2 cut(s)	291, 472
GluI	GCNGC	2 cut(s)	306, 374
HaeIII	GGCC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	225
HinfI	GANTC	4 cut(s)	46, 89, 357, 412
Hpy166II	GTNNAC	2 cut(s)	176, 427
Hpy188I	TCNGA	4 cut(s)	125, 408, 417, 469
Hpy8I	GTNNAC	2 cut(s)	176, 427
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	344, 381
HpyCH4IV	ACGT	2 cut(s)	142, 429
HpyCH4V	TGCA	5 cut(s)	96, 308, 400, 427, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	311, 332
HpyF3I	CTNAG	4 cut(s)	42, 50, 240, 267
HpySE526I	ACGT	2 cut(s)	142, 429
Hsp92II	CATG	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	243, 448
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	8 cut(s)	19, 189, 192, 240, 267, 371, 437, 448
Lsp1109I	GCAGC	2 cut(s)	292, 360
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	291, 472
MaeII	ACGT	2 cut(s)	142, 429
MaeIII	GTNAC	2 cut(s)	194, 393
MalI	GATC	2 cut(s)	245, 450
MboI	GATC	2 cut(s)	243, 448
MboII	GAAGA	1 cut(s)	356
MflI	RGATCY	2 cut(s)	243, 448
MhlI	GDGCHC	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	7 cut(s)	76, 141, 144, 210, 254, 316, 426
MspR9I	CCNGG	2 cut(s)	7, 255
MvaI	CCWGG	2 cut(s)	7, 255
MwoI	GCNNNNNNNGC	2 cut(s)	311, 332
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	2 cut(s)	243, 448
NlaIII	CATG	1 cut(s)	225
NlaIV	GGNNCC	1 cut(s)	132
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	194
PcsI	WCGNNNNNNNCGW	2 cut(s)	19, 28
PfeI	GAWTC	3 cut(s)	46, 89, 412
PkrI	GCNGC	2 cut(s)	307, 375
PleI	GAGTC	1 cut(s)	351
PmaCI	CACGTG	1 cut(s)	430
PmlI	CACGTG	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	351
Ppu21I	YACGTR	1 cut(s)	430
Psp1406I	AACGTT	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	5, 253
PspCI	CACGTG	1 cut(s)	430
PspGI	CCWGG	2 cut(s)	5, 253
PspN4I	GGNNCC	1 cut(s)	132
PspPI	GGNCC	1 cut(s)	176
PsuI	RGATCY	2 cut(s)	243, 448
RsaI	GTAC	2 cut(s)	68, 283
RsaNI	GTAC	2 cut(s)	67, 282
SatI	GCNGC	2 cut(s)	306, 374
Sau3AI	GATC	2 cut(s)	243, 448
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	2 cut(s)	7, 255
SduI	GDGCHC	1 cut(s)	429
SfaNI	GCATC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	291, 472
StyD4I	CCNGG	2 cut(s)	5, 253
TaaI	ACNGT	2 cut(s)	344, 381
TaiI	ACGT	2 cut(s)	145, 432
TaqI	TCGA	2 cut(s)	99, 146
TaqII	GACCGA	1 cut(s)	95
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	3 cut(s)	46, 89, 412
TscAI	CASTG	2 cut(s)	375, 384
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	305, 373
Tsp45I	GTSAC	1 cut(s)	194
TspDTI	ATGAA	4 cut(s)	176, 285, 315, 425
TspGWI	ACGGA	2 cut(s)	28, 236
TspRI	CASTG	2 cut(s)	375, 384
VneI	GTGCAC	1 cut(s)	425
VpaK11BI	GGWCC	1 cut(s)	176
XspI	CTAG	2 cut(s)	291, 472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.