Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Forward (+)

33904894 .. 33907462

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43870.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGACCAACTTGAAGAAAGTCCATACTAAACAGGATGGATCTAGTCCTGTGGCTGAGATTCTTGCAAAATGGAAAGAGTATAATGACCATCTGGAATCATCCAATGATGGGAGTAAACCTACTCGCAAAGTTCCTGCCAAGGGGTCTAGGAAGGGATGCATGAAAGGTAAGGGAGGACCTGAGAATTCTCGATGCAACTACAGAGGTGTTAGGCAGAGGACATGGGGAAAGTGGGTTGCTGAAATCCGGTCACCAAATAGGGGAAGTAGGCTCTGGCTAGGTACCTTTCCAACTGCAATTGAAGCTGCTCTTGCTTATGATAAAGCTGCCAGGGCCATGTACGGTTCCGCTGCCCGTCTCAACTTTCCTAAGGTTACCTTCTCCAGTTCTGGTAGAGCAACTGTACTGGCTCCTTCCTGTGTAGCGACTTCTGCAGGTTCAGAATCATCGGGAACATCAGGTCACTCTGAGGATTTTTCTCCTCAGGATAAGGTGAATTCACATTCACCTCACATAGTGAACAATGATGTCATCGATCTAAATCAAATGGATCTAAATCAAACTGAGGAGGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

193

Amino Acids

20.84

Weight (kDa)

9.4

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	66 - 115	4.6e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	425
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	281
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	2 cut(s)	46, 558
AcsI	RAATTY	2 cut(s)	184, 496
AdeI	CACNNNGTG	1 cut(s)	517
AfaI	GTAC	3 cut(s)	283, 341, 405
AfiI	CCNNNNNNNGG	3 cut(s)	108, 140, 260
AgsI	TTSAA	2 cut(s)	13, 302
AjnI	CCWGG	1 cut(s)	329
AluBI	AGCT	2 cut(s)	305, 326
AluI	AGCT	2 cut(s)	305, 326
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	2 cut(s)	46, 558
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	305, 326, 350
ApoI	RAATTY	2 cut(s)	184, 496
Asp718I	GGTACC	1 cut(s)	281
AspS9I	GGNCC	2 cut(s)	176, 333
AsuHPI	GGTGA	3 cut(s)	243, 498, 505
AvaII	GGWCC	1 cut(s)	176
AxyI	CCTNAGG	2 cut(s)	369, 483
BanI	GGYRCC	1 cut(s)	281
BbvI	GCAGC	3 cut(s)	292, 313, 337
BccI	CCATC	3 cut(s)	29, 96, 101
BciT130I	CCWGG	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	3 cut(s)	42, 147, 278
BfmI	CTRYAG	2 cut(s)	199, 432
BfuAI	ACCTGC	1 cut(s)	425
BisI	GCNGC	3 cut(s)	306, 327, 351
BlsI	GCNGC	3 cut(s)	307, 328, 352
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	176, 333
BmiI	GGNNCC	3 cut(s)	283, 346, 411
BmrFI	CCNGG	1 cut(s)	331
BmsI	GCATC	2 cut(s)	146, 182
BpmI	CTGGAG	1 cut(s)	367
Bsa29I	ATCGAT	1 cut(s)	534
BsaBI	GATNNNNATC	2 cut(s)	540, 555
BsaJI	CCNNGG	2 cut(s)	138, 330
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 140, 260
Bse1I	ACTGG	2 cut(s)	384, 411
Bse21I	CCTNAGG	2 cut(s)	369, 483
Bse8I	GATNNNNATC	2 cut(s)	540, 555
BseBI	CCWGG	1 cut(s)	331
BseCI	ATCGAT	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	138, 330
BseGI	GGATG	3 cut(s)	40, 98, 161
BseJI	GATNNNNATC	2 cut(s)	540, 555
BseLI	CCNNNNNNNGG	3 cut(s)	108, 140, 260
BseMII	CTCAG	5 cut(s)	45, 171, 459, 497, 555
BseNI	ACTGG	2 cut(s)	384, 411
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	292, 313, 337
BshFI	GGCC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	281
BshVI	ATCGAT	1 cut(s)	534
BsiSI	CCGG	1 cut(s)	247
BslI	CCNNNNNNNGG	3 cut(s)	108, 140, 260
BsmAI	GTCTC	1 cut(s)	362
BsmBI	CGTCTC	1 cut(s)	362
BsnI	GGCC	1 cut(s)	335
Bsp143I	GATC	3 cut(s)	38, 535, 550
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	5 cut(s)	46, 172, 460, 496, 556
BspDI	ATCGAT	1 cut(s)	534
BspLI	GGNNCC	3 cut(s)	283, 346, 411
BspMAI	CTGCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	425
BspPI	GGATC	2 cut(s)	46, 558
BspT107I	GGYRCC	1 cut(s)	281
BsrI	ACTGG	2 cut(s)	384, 411
BssECI	CCNNGG	2 cut(s)	138, 330
BssMI	GATC	3 cut(s)	38, 535, 550
BssT1I	CCWWGG	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	344, 403
BstDEI	CTNAG	6 cut(s)	54, 180, 369, 468, 483, 564
BstEII	GGTNACC	2 cut(s)	249, 373
BstF5I	GGATG	3 cut(s)	40, 98, 161
BstKTI	GATC	3 cut(s)	41, 538, 553
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	3 cut(s)	38, 535, 550
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 431
BstNI	CCWGG	1 cut(s)	331
BstPI	GGTNACC	2 cut(s)	249, 373
BstSCI	CCNGG	1 cut(s)	329
BstSFI	CTRYAG	2 cut(s)	199, 432
BstV1I	GCAGC	3 cut(s)	292, 313, 337
BstX2I	RGATCY	2 cut(s)	38, 550
BstYI	RGATCY	2 cut(s)	38, 550
Bsu15I	ATCGAT	1 cut(s)	534
Bsu36I	CCTNAGG	2 cut(s)	369, 483
BsuRI	GGCC	1 cut(s)	335
BsuTUI	ATCGAT	1 cut(s)	534
BtsCI	GGATG	3 cut(s)	40, 98, 161
BveI	ACCTGC	1 cut(s)	425
Cfr13I	GGNCC	2 cut(s)	176, 333
ClaI	ATCGAT	1 cut(s)	534
Csp6I	GTAC	3 cut(s)	282, 340, 404
CviAII	CATG	3 cut(s)	160, 222, 337
CviJI	RGCY	7 cut(s)	53, 271, 277, 305, 326, 335, 410
CviKI_1	RGCY	7 cut(s)	53, 271, 277, 305, 326, 335, 410
CviQI	GTAC	3 cut(s)	282, 340, 404
DdeI	CTNAG	6 cut(s)	54, 180, 369, 468, 483, 564
DpnI	GATC	3 cut(s)	40, 537, 552
DpnII	GATC	3 cut(s)	38, 535, 550
DraIII	CACNNNGTG	1 cut(s)	517
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	176
Eco81I	CCTNAGG	2 cut(s)	369, 483
Eco91I	GGTNACC	2 cut(s)	249, 373
EcoO109I	RGGNCCY	1 cut(s)	176
EcoO65I	GGTNACC	2 cut(s)	249, 373
EcoRI	GAATTC	2 cut(s)	184, 496
EcoRII	CCWGG	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	138
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	3 cut(s)	163, 225, 340
FaiI	YATR	7 cut(s)	24, 81, 161, 223, 318, 338, 515
FalI	AAGNNNNNCTT	4 cut(s)	294, 326, 362, 394
FatI	CATG	3 cut(s)	159, 221, 336
Fnu4HI	GCNGC	3 cut(s)	306, 327, 351
FokI	GGATG	3 cut(s)	47, 85, 168
Fsp4HI	GCNGC	3 cut(s)	306, 327, 351
FspBI	CTAG	3 cut(s)	42, 147, 278
GluI	GCNGC	3 cut(s)	306, 327, 351
GsuI	CTGGAG	1 cut(s)	367
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	247
Hin1II	CATG	3 cut(s)	163, 225, 340
HinfI	GANTC	3 cut(s)	58, 95, 443
HpaII	CCGG	1 cut(s)	247
HphI	GGTGA	3 cut(s)	243, 498, 505
Hpy166II	GTNNAC	2 cut(s)	116, 520
Hpy188I	TCNGA	2 cut(s)	442, 469
Hpy188III	TCNNGA	4 cut(s)	92, 189, 450, 485
Hpy8I	GTNNAC	2 cut(s)	116, 520
HpyAV	CCTTC	4 cut(s)	145, 388, 423, 566
HpyCH4III	ACNGT	2 cut(s)	344, 403
HpyCH4V	TGCA	5 cut(s)	65, 159, 195, 296, 434
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 431
HpyF3I	CTNAG	6 cut(s)	54, 180, 369, 468, 483, 564
Hsp92II	CATG	3 cut(s)	163, 225, 340
KpnI	GGTACC	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	38, 535, 550
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	3 cut(s)	292, 313, 337
LweI	GCATC	2 cut(s)	146, 182
MaeI	CTAG	3 cut(s)	42, 147, 278
MaeIII	GTNAC	3 cut(s)	249, 373, 461
MalI	GATC	3 cut(s)	40, 537, 552
MboI	GATC	3 cut(s)	38, 535, 550
MboII	GAAGA	1 cut(s)	25
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	2 cut(s)	38, 550
MluCI	AATT	3 cut(s)	184, 297, 496
MmeI	TCCRAC	1 cut(s)	314
MnlI	CCTC	8 cut(s)	167, 197, 210, 463, 492, 519, 559, 562
Mph1103I	ATGCAT	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	247
MspR9I	CCNGG	1 cut(s)	331
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 431
NdeII	GATC	3 cut(s)	38, 535, 550
NlaIII	CATG	3 cut(s)	163, 225, 340
NlaIV	GGNNCC	3 cut(s)	283, 346, 411
NmuCI	GTSAC	2 cut(s)	249, 461
NsiI	ATGCAT	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	58, 95, 443
PkrI	GCNGC	3 cut(s)	307, 328, 352
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	329
PspEI	GGTNACC	2 cut(s)	249, 373
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	283, 346, 411
PspPI	GGNCC	2 cut(s)	176, 333
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	436
PsuI	RGATCY	2 cut(s)	38, 550
RsaI	GTAC	3 cut(s)	283, 341, 405
RsaNI	GTAC	3 cut(s)	282, 340, 404
SatI	GCNGC	3 cut(s)	306, 327, 351
Sau3AI	GATC	3 cut(s)	38, 535, 550
Sau96I	GGNCC	2 cut(s)	176, 333
ScrFI	CCNGG	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	146, 182
SfcI	CTRYAG	2 cut(s)	199, 432
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	3 cut(s)	184, 297, 496
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	3 cut(s)	42, 147, 278
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	2 cut(s)	344, 403
TaqI	TCGA	2 cut(s)	190, 534
TasI	AATT	3 cut(s)	184, 297, 496
TatI	WGTACW	1 cut(s)	403
TfiI	GAWTC	3 cut(s)	58, 95, 443
TseFI	GTSAC	2 cut(s)	249, 461
TseI	GCWGC	3 cut(s)	305, 326, 350
Tsp45I	GTSAC	2 cut(s)	249, 461
TspDTI	ATGAA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	2 cut(s)	184, 496
XspI	CTAG	3 cut(s)	42, 147, 278
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.