Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Forward (+)

22338735 .. 22340741

Gene Structure 2007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G223300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACCAAGTTGGTCAAAACAGATCCAAGACAGGATGGATCTAATCCTGTGGCTGAGACTCTTGCGAAGTGGAAAGCATATAACGACCATCTGGATTCGTGCAACGATGAAAGTAAACCAATTCGTAGAGTACCAGCCAAGGGATCAAAGAAGGGATGCATGAAGGGTAAAGGCGGGCCTGAGAACTCTCGTTGTAACTACAGAGGTGTTAGGCAGAGGACATGGGGCAAGTGGGTTGCAGAAATTCGGACACCAAACAGGGGAAGTAGGCTCTGGCTGGGTACTTTCCCAACTGCAATTGAAGCTGCACTTGCTTATGATGAAGCTGCAAGGGCCATGTATGGTTCTGCTGCGCGCCTTAACTTTCCTAATATATCAATTTCCAGTTTGTCAAAGGATCCTTCTTCTAGGGCAACTCTTTCAGCTGTTTCCTCGTTAGCAACCTCTGCAGGTTCAGAATCCTCAGGAAGATCAGACCACTCGGAGGATTGTGCTGCTCAGGGTAAGGTGAATTATCTTTCCCCTAGTGTAGAGAATGAGGATACGACGATGAATCGAGATCAAACAAATGAGGATGGAGAAGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

197

Amino Acids

21.31

Weight (kDa)

8.32

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccII	CGCG	1 cut(s)	355
AciI	CCGC	1 cut(s)	174
AclWI	GGATC	5 cut(s)	17, 46, 151, 392, 405
AcsI	RAATTY	1 cut(s)	243
AfaI	GTAC	2 cut(s)	132, 283
AfiI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
AgsI	TTSAA	1 cut(s)	302
AluBI	AGCT	3 cut(s)	305, 326, 425
AluI	AGCT	3 cut(s)	305, 326, 425
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	5 cut(s)	17, 46, 151, 392, 405
AoxI	GGCC	2 cut(s)	176, 333
ApeKI	GCWGC	4 cut(s)	305, 326, 350, 494
ApoI	RAATTY	1 cut(s)	243
AspLEI	GCGC	2 cut(s)	355, 357
AspS9I	GGNCC	2 cut(s)	176, 333
AsuHPI	GGTGA	1 cut(s)	520
AxyI	CCTNAGG	1 cut(s)	463
BamHI	GGATCC	1 cut(s)	397
BbvI	GCAGC	4 cut(s)	292, 313, 337, 481
BccI	CCATC	3 cut(s)	29, 96, 569
BciVI	GTATCC	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	2 cut(s)	408, 525
BfmI	CTRYAG	2 cut(s)	199, 447
BfuAI	ACCTGC	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	4 cut(s)	306, 327, 351, 495
BlsI	GCNGC	4 cut(s)	307, 328, 352, 496
BmgT120I	GGNCC	2 cut(s)	176, 333
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	1 cut(s)	146
Bpu10I	CCTNAGC	1 cut(s)	498
BsaJI	CCNNGG	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 260, 484
Bse1I	ACTGG	1 cut(s)	384
Bse21I	CCTNAGG	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	40, 161, 580
BseLI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
BseMII	CTCAG	4 cut(s)	45, 171, 477, 512
BseNI	ACTGG	1 cut(s)	384
BsePI	GCGCGC	1 cut(s)	353
BseXI	GCAGC	4 cut(s)	292, 313, 337, 481
BseYI	CCCAGC	1 cut(s)	277
BsgI	GTGCAG	1 cut(s)	291
Bsh1236I	CGCG	1 cut(s)	355
BshFI	GGCC	2 cut(s)	178, 335
BslI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	178, 335
Bsp143I	GATC	6 cut(s)	22, 38, 143, 397, 470, 559
BspACI	CCGC	1 cut(s)	174
BspANI	GGCC	2 cut(s)	178, 335
BspCNI	CTCAG	4 cut(s)	46, 172, 476, 511
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	5 cut(s)	17, 46, 151, 392, 405
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	138
BssHII	GCGCGC	1 cut(s)	353
BssMI	GATC	6 cut(s)	22, 38, 143, 397, 470, 559
BssT1I	CCWWGG	1 cut(s)	138
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	176, 355
BstDEI	CTNAG	4 cut(s)	54, 180, 463, 498
BstF5I	GGATG	3 cut(s)	40, 161, 580
BstFNI	CGCG	1 cut(s)	355
BstHHI	GCGC	2 cut(s)	355, 357
BstKTI	GATC	6 cut(s)	25, 41, 146, 400, 473, 562
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	6 cut(s)	22, 38, 143, 397, 470, 559
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
BstSFI	CTRYAG	2 cut(s)	199, 447
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	4 cut(s)	292, 313, 337, 481
BstX2I	RGATCY	3 cut(s)	22, 38, 397
BstYI	RGATCY	3 cut(s)	22, 38, 397
Bsu36I	CCTNAGG	1 cut(s)	463
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	178, 335
BtsCI	GGATG	3 cut(s)	40, 161, 580
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	176, 355
CfoI	GCGC	2 cut(s)	355, 357
Cfr13I	GGNCC	2 cut(s)	176, 333
Csp6I	GTAC	2 cut(s)	131, 282
CviAII	CATG	3 cut(s)	160, 222, 337
CviJI	RGCY	9 cut(s)	53, 137, 178, 271, 277, 305, 326, 335, 425
CviKI_1	RGCY	9 cut(s)	53, 137, 178, 271, 277, 305, 326, 335, 425
CviQI	GTAC	2 cut(s)	131, 282
DdeI	CTNAG	4 cut(s)	54, 180, 463, 498
DpnI	GATC	6 cut(s)	24, 40, 145, 399, 472, 561
DpnII	GATC	6 cut(s)	22, 38, 143, 397, 470, 559
Eco130I	CCWWGG	1 cut(s)	138
Eco81I	CCTNAGG	1 cut(s)	463
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	1 cut(s)	161
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	3 cut(s)	163, 225, 340
FaiI	YATR	8 cut(s)	79, 81, 161, 223, 318, 338, 342, 374
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	3 cut(s)	159, 221, 336
FauI	CCCGC	1 cut(s)	167
Fnu4HI	GCNGC	4 cut(s)	306, 327, 351, 495
FokI	GGATG	3 cut(s)	47, 168, 587
Fsp4HI	GCNGC	4 cut(s)	306, 327, 351, 495
FspBI	CTAG	2 cut(s)	408, 525
GlaI	GCGC	2 cut(s)	354, 356
GluI	GCNGC	4 cut(s)	306, 327, 351, 495
GsaI	CCCAGC	1 cut(s)	281
HaeIII	GGCC	2 cut(s)	178, 335
HhaI	GCGC	2 cut(s)	355, 357
Hin1II	CATG	3 cut(s)	163, 225, 340
Hin6I	GCGC	2 cut(s)	353, 355
HinP1I	GCGC	2 cut(s)	353, 355
HinfI	GANTC	4 cut(s)	58, 95, 458, 553
HphI	GGTGA	1 cut(s)	520
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	4 cut(s)	249, 457, 475, 484
Hpy188III	TCNNGA	3 cut(s)	92, 465, 557
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	3 cut(s)	145, 157, 411
HpyCH4V	TGCA	7 cut(s)	102, 159, 239, 296, 308, 329, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
HpyF3I	CTNAG	4 cut(s)	54, 180, 463, 498
Hsp92II	CATG	3 cut(s)	163, 225, 340
HspAI	GCGC	2 cut(s)	353, 355
Kzo9I	GATC	6 cut(s)	22, 38, 143, 397, 470, 559
Lsp1109I	GCAGC	4 cut(s)	292, 313, 337, 481
LweI	GCATC	1 cut(s)	146
MaeI	CTAG	2 cut(s)	408, 525
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	6 cut(s)	24, 40, 145, 399, 472, 561
MboI	GATC	6 cut(s)	22, 38, 143, 397, 470, 559
MboII	GAAGA	2 cut(s)	396, 480
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	3 cut(s)	22, 38, 397
MluCI	AATT	5 cut(s)	120, 243, 297, 378, 511
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	8 cut(s)	197, 210, 442, 454, 472, 478, 532, 565
Mph1103I	ATGCAT	1 cut(s)	161
MseI	TTAA	1 cut(s)	360
MspA1I	CMGCKG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
NdeII	GATC	6 cut(s)	22, 38, 143, 397, 470, 559
NlaIII	CATG	3 cut(s)	163, 225, 340
NlaIV	GGNNCC	1 cut(s)	399
NsiI	ATGCAT	1 cut(s)	161
PauI	GCGCGC	1 cut(s)	353
PfeI	GAWTC	3 cut(s)	95, 458, 553
PkrI	GCNGC	4 cut(s)	307, 328, 352, 496
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PspFI	CCCAGC	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	2 cut(s)	176, 333
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	22, 38, 397
PteI	GCGCGC	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	2 cut(s)	132, 283
RsaNI	GTAC	2 cut(s)	131, 282
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	4 cut(s)	306, 327, 351, 495
Sau3AI	GATC	6 cut(s)	22, 38, 143, 397, 470, 559
Sau96I	GGNCC	2 cut(s)	176, 333
SchI	GAGTC	1 cut(s)	52
SetI	ASST	7 cut(s)	208, 307, 328, 427, 446, 454, 510
SfaNI	GCATC	1 cut(s)	146
SfcI	CTRYAG	2 cut(s)	199, 447
Sse9I	AATT	5 cut(s)	120, 243, 297, 378, 511
SsiI	CCGC	1 cut(s)	174
SspMI	CTAG	2 cut(s)	408, 525
StyI	CCWWGG	1 cut(s)	138
TaqI	TCGA	1 cut(s)	556
TasI	AATT	5 cut(s)	120, 243, 297, 378, 511
TfiI	GAWTC	3 cut(s)	95, 458, 553
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseI	GCWGC	4 cut(s)	305, 326, 350, 494
TspDTI	ATGAA	4 cut(s)	123, 176, 336, 566
XapI	RAATTY	1 cut(s)	243
XspI	CTAG	2 cut(s)	408, 525
Zsp2I	ATGCAT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.