Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008991

Physical Location & Seq

Genomic Coordinates Reverse (-)

6519725 .. 6520306

Gene Structure 582 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g08690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCCCAAGTTGGTCAAGATTGATACAAGACGGGATGGACCTAATCCTGTGGCCGAGACTCTTGCAAAGTGGAAAGAGTACAACGACCATTTGGATTCATGCAATGATGAGGTTGGACCGTTCCGTAGAGTACCAGCCAAGGGATCAAAGAAGGGATGTATGAAGGGTAAGGGAGGACCTGAGAACTCTCGCTGTAACTACAGAGGTGTTAGACAGAGGACATGGGGCAAGTGGGTTGCAGAGATCCGGACACCCAACAGGGGAAGTAGGCTCTGGCTAGGCACTTTTCCAACTGCCATTGAAGCTGCTCTTGCTTATGATGAAGCGGCAAGGGCCGTGTATTGTTCTGCTGCCCGGCTTAACTTCCCTAATATCTCAATTTCCACTTTATCAAAGGATTCTTCATCAACAAAAACTCTGTCCTCCCTTCCTTTGTTAGCATCATCTGCAGGTTCAGAATCCTCAACGAGATCAGACCACTCGGGGGATTGTGCTGATCAGGTGAATGGTCTTTCATCTAATGTAGAGAATGATGATACGACAAATGTAGATCGAACAAATGAGGATCGAGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

194

Amino Acids

21.11

Weight (kDa)

7.61

Isoelectric Point (pI)

39.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	66 - 113	2.3e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008991)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40340 AT2G40350 AT2G40350
fragaria_vesca	FvH4_6g43870
malus_domestica	MD17G1089700.v1.1
prunus_persica	Prupe.3G223300_v2.0.a1
pyrus_communis	pycom17g08690
rosa_chinensis	RchiOBHm_Chr2g0160621
rosa_laevigata	RLG00000021227
rosa_multiflora	Rmu_sc0000674.1_g000028
rosa_roxburghii	Rroxscaffold_2G00089550
rosa_rugosa	Rorug02G0484300
rosa_samantha	Rh2AG549400 Rh2BG563800 Rh2CG534000 Rh2DG572800
rosa_wichuraiana	Rw2G045510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	440
AccIII	TCCGGA	1 cut(s)	246
AciI	CCGC	1 cut(s)	326
AclWI	GGATC	3 cut(s)	151, 238, 573
AcoI	YGGCCR	1 cut(s)	51
AfaI	GTAC	2 cut(s)	80, 132
AfiI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
AgsI	TTSAA	1 cut(s)	302
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
Alw26I	GTCTC	1 cut(s)	50
AlwI	GGATC	3 cut(s)	151, 238, 573
Ama87I	CYCGRG	1 cut(s)	481
Aor13HI	TCCGGA	1 cut(s)	246
AoxI	GGCC	2 cut(s)	51, 333
ApeKI	GCWGC	2 cut(s)	305, 350
ArsI	GACNNNNNNTTYG	2 cut(s)	404, 436
AspS9I	GGNCC	4 cut(s)	38, 116, 176, 333
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	514
AvaI	CYCGRG	1 cut(s)	481
AvaII	GGWCC	3 cut(s)	38, 116, 176
BbvI	GCAGC	2 cut(s)	292, 337
BccI	CCATC	1 cut(s)	29
BceAI	ACGGC	1 cut(s)	320
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	1 cut(s)	50
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	2 cut(s)	199, 447
BfuAI	ACCTGC	1 cut(s)	440
BisI	GCNGC	3 cut(s)	306, 327, 351
BlsI	GCNGC	3 cut(s)	307, 328, 352
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	3 cut(s)	38, 116, 176
BmeT110I	CYCGRG	1 cut(s)	481
BmgT120I	GGNCC	4 cut(s)	38, 116, 176, 333
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	138
BsaWI	WCCGGW	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 260, 484
Bse3DI	GCAATG	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	246
BseDI	CCNNGG	1 cut(s)	138
BseGI	GGATG	2 cut(s)	40, 161
BseLI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	171
BseXI	GCAGC	2 cut(s)	292, 337
BshFI	GGCC	2 cut(s)	53, 335
BsiHKCI	CYCGRG	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	247, 355
BslI	CCNNNNNNNGG	3 cut(s)	140, 260, 484
BsmAI	GTCTC	1 cut(s)	50
BsnI	GGCC	2 cut(s)	53, 335
BsoBI	CYCGRG	1 cut(s)	481
Bsp13I	TCCGGA	1 cut(s)	246
Bsp143I	GATC	6 cut(s)	143, 243, 470, 496, 550, 565
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	2 cut(s)	53, 335
BspCNI	CTCAG	1 cut(s)	172
BspEI	TCCGGA	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	3 cut(s)	151, 238, 573
BsrDI	GCAATG	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	138
BssMI	GATC	6 cut(s)	143, 243, 470, 496, 550, 565
BssT1I	CCWWGG	1 cut(s)	138
Bst4CI	ACNGT	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	2 cut(s)	40, 161
BstKTI	GATC	6 cut(s)	146, 246, 473, 499, 553, 568
BstMAI	GTCTC	1 cut(s)	50
BstMBI	GATC	6 cut(s)	143, 243, 470, 496, 550, 565
BstMWI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
BstSCI	CCNGG	1 cut(s)	353
BstSFI	CTRYAG	2 cut(s)	199, 447
BstV1I	GCAGC	2 cut(s)	292, 337
BstX2I	RGATCY	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	53, 335
BtsCI	GGATG	2 cut(s)	40, 161
BveI	ACCTGC	1 cut(s)	440
Cfr13I	GGNCC	4 cut(s)	38, 116, 176, 333
Csp6I	GTAC	2 cut(s)	79, 131
CviAII	CATG	2 cut(s)	99, 222
CviJI	RGCY	7 cut(s)	53, 137, 271, 277, 305, 335, 358
CviKI_1	RGCY	7 cut(s)	53, 137, 271, 277, 305, 335, 358
CviQI	GTAC	2 cut(s)	79, 131
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	6 cut(s)	145, 245, 472, 498, 552, 567
DpnII	GATC	6 cut(s)	143, 243, 470, 496, 550, 565
EaeI	YGGCCR	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	138
Eco47I	GGWCC	3 cut(s)	38, 116, 176
Eco88I	CYCGRG	1 cut(s)	481
EcoO109I	RGGNCCY	1 cut(s)	176
EcoT14I	CCWWGG	1 cut(s)	138
ErhI	CCWWGG	1 cut(s)	138
FaeI	CATG	2 cut(s)	102, 225
FaiI	YATR	4 cut(s)	100, 161, 223, 318
FalI	AAGNNNNNCTT	2 cut(s)	294, 326
FatI	CATG	2 cut(s)	98, 221
FbaI	TGATCA	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	306, 327, 351
FokI	GGATG	2 cut(s)	47, 168
Fsp4HI	GCNGC	3 cut(s)	306, 327, 351
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	3 cut(s)	306, 327, 351
HaeIII	GGCC	2 cut(s)	53, 335
HapII	CCGG	2 cut(s)	247, 355
Hin1II	CATG	2 cut(s)	102, 225
HinfI	GANTC	4 cut(s)	58, 95, 398, 458
HpaII	CCGG	2 cut(s)	247, 355
HphI	GGTGA	1 cut(s)	514
Hpy188I	TCNGA	2 cut(s)	457, 475
Hpy188III	TCNNGA	3 cut(s)	16, 247, 569
HpyAV	CCTTC	3 cut(s)	145, 157, 437
HpyCH4III	ACNGT	1 cut(s)	120
HpyCH4V	TGCA	4 cut(s)	65, 102, 239, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	102, 225
Kpn2I	TCCGGA	1 cut(s)	246
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	6 cut(s)	143, 243, 470, 496, 550, 565
LpnPI	CCDG	9 cut(s)	60, 147, 192, 244, 259, 260, 368, 435, 485
Lsp1109I	GCAGC	2 cut(s)	292, 337
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	6 cut(s)	145, 245, 472, 498, 552, 567
MboI	GATC	6 cut(s)	143, 243, 470, 496, 550, 565
MboII	GAAGA	1 cut(s)	393
MflI	RGATCY	1 cut(s)	243
MluCI	AATT	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	52
MmeI	TCCRAC	2 cut(s)	94, 314
MnlI	CCTC	7 cut(s)	103, 167, 197, 210, 433, 472, 556
MroI	TCCGGA	1 cut(s)	246
MseI	TTAA	1 cut(s)	360
MspI	CCGG	2 cut(s)	247, 355
MspR9I	CCNGG	1 cut(s)	355
MwoI	GCNNNNNNNGC	4 cut(s)	302, 311, 332, 446
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	6 cut(s)	143, 243, 470, 496, 550, 565
NlaIII	CATG	2 cut(s)	102, 225
NmeAIII	GCCGAG	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	95, 398, 458
PkrI	GCNGC	3 cut(s)	307, 328, 352
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PpuMI	RGGWCCY	1 cut(s)	176
Psp5II	RGGWCCY	1 cut(s)	176
PspPI	GGNCC	4 cut(s)	38, 116, 176, 333
PspPPI	RGGWCCY	1 cut(s)	176
PstI	CTGCAG	1 cut(s)	451
PsuI	RGATCY	1 cut(s)	243
RsaI	GTAC	2 cut(s)	80, 132
RsaNI	GTAC	2 cut(s)	79, 131
SaqAI	TTAA	1 cut(s)	360
SatI	GCNGC	3 cut(s)	306, 327, 351
Sau3AI	GATC	6 cut(s)	143, 243, 470, 496, 550, 565
Sau96I	GGNCC	4 cut(s)	38, 116, 176, 333
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	355
SetI	ASST	7 cut(s)	43, 114, 181, 208, 307, 454, 504
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	2 cut(s)	199, 447
SinI	GGWCC	3 cut(s)	38, 116, 176
Sse9I	AATT	1 cut(s)	378
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	1 cut(s)	120
TaqI	TCGA	2 cut(s)	553, 568
TasI	AATT	1 cut(s)	378
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	3 cut(s)	95, 398, 458
Tru1I	TTAA	1 cut(s)	360
Tru9I	TTAA	1 cut(s)	360
TseI	GCWGC	2 cut(s)	305, 350
TspDTI	ATGAA	5 cut(s)	87, 176, 336, 393, 504
TspGWI	ACGGA	1 cut(s)	113
VpaK11BI	GGWCC	3 cut(s)	38, 116, 176
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.