AT2G40970
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012989
Physical Location & Seq
Reverse (-)
17097550 .. 17098731
1182 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40970.1

Sequence Viewer

Length: 747 bp
ATGAGAGAAGATAATCCAAATTGGTTCCTTAGATGGGAAGAAGAGCTTCCATCTCCAGAAGAACTCATCCCTATCTCTCAAACCTTAATCACTCCTCATCTAGCTCTCGCTTTCCAAATCGGAAGTCCTAATCATCATCTCGGATCAAAGAGAACCACCGCGATTTATCACCAGAAGCTTCAATCCTCCACCACTCCAACAACTCCAACTCCAACTCCTCCACCGATGATGATGAATTCTGATTTCGGCGGTGGCGATTCCACGGATCTTGGTTCAGGATCAATAGGAGGAGAGCCAGCAAGAACGTTGAAACGGCCGCGTCTAGTGTGGACGCCTCAGCTACACAAACGTTTCGTGGATGCGGTTGGACACTTAGGGATCAAAAACGCAGTTCCAAAGACTATAATGCAGCTTATGAGCGTTGAAGGATTGACTAGAGAGAACGTTGCGAGTCATCTTCAGAAATATCGTCTTTACCTTAGGAGAATGCAAGGCGGGAACGGTAACGGAATCACTGGAGGACACGTCATCGTCTCTGATTCGGCTACTGATCGGCTATTTGCTAGCTCACCGGTTCCAGCTCATTTCTTGAGCCCGGATTACTTGATGCCGCCATTAGAGCATTCGTATATGGGGAAACATGTGATTACGCAGCAAAACCAAGTGGTTCGTAATCTGAGGTATGAAGATTCGGAATATGGTCATGGTAGTATGAAGATGCTTAAGCTCTTCCCTGCCGGAAATTAA

Protein Analysis

248

Amino Acids

27.55

Weight (kDa)

9.12

Isoelectric Point (pI)

52.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 108 - 157 5.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40970 AT3G10760 AT5G05090
fragaria_vesca FvH4_6g25730
malus_domestica MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica Prupe.7G027500_v2.0.a1
pyrus_communis pycom12g07980
rosa_chinensis RchiOBHm_Chr2g0125991
rosa_laevigata RLG00000018885
rosa_multiflora Rmu_sc0006201.1_g000002
rosa_roxburghii Rroxscaffold_2G00117470
rosa_rugosa Rorug02G0260200
rosa_samantha Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana Rw2G025740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 161, 319
AciI CCGC 6 cut(s) 159, 249, 317, 362, 495, 611
AclI AACGTT 3 cut(s) 305, 349, 444
AclWI GGATC 4 cut(s) 151, 273, 286, 386
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 34
AflII CTTAAG 1 cut(s) 722
AflIII ACRYGT 2 cut(s) 523, 640
AgeI ACCGGT 1 cut(s) 571
AgsI TTSAA 3 cut(s) 182, 310, 425
AjiI CACGTC 1 cut(s) 526
AluBI AGCT 8 cut(s) 46, 104, 178, 340, 412, 567, 581, 727
AluI AGCT 8 cut(s) 46, 104, 178, 340, 412, 567, 581, 727
Alw26I GTCTC 1 cut(s) 538
AlwI GGATC 4 cut(s) 151, 273, 286, 386
AoxI GGCC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 409, 652
ApoI RAATTY 1 cut(s) 235
ArsI GACNNNNNNTTYG 2 cut(s) 109, 141
AsiGI ACCGGT 1 cut(s) 571
Asp700I GAANNNNTTC 1 cut(s) 45
AsuC2I CCSGG 1 cut(s) 596
AsuHPI GGTGA 2 cut(s) 161, 561
AsuNHI GCTAGC 1 cut(s) 563
AxyI CCTNAGG 1 cut(s) 479
BanII GRGCYC 1 cut(s) 596
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 421, 664
BccI CCATC 2 cut(s) 27, 58
BceAI ACGGC 1 cut(s) 329
BcnI CCSGG 1 cut(s) 596
BcoDI GTCTC 1 cut(s) 538
BfaI CTAG 4 cut(s) 101, 323, 435, 564
BfrI CTTAAG 1 cut(s) 722
BisI GCNGC 4 cut(s) 317, 410, 611, 653
BlsI GCNGC 4 cut(s) 318, 411, 612, 654
Bme1390I CCNGG 1 cut(s) 596
BmgBI CACGTC 1 cut(s) 526
BmiI GGNNCC 2 cut(s) 26, 576
BmrFI CCNGG 1 cut(s) 596
BmsI GCATC 3 cut(s) 349, 597, 708
BmtI GCTAGC 1 cut(s) 567
BpmI CTGGAG 2 cut(s) 39, 537
Bpu10I CCTNAGC 1 cut(s) 336
BpuEI CTTGAG 1 cut(s) 610
BpuMI CCSGG 1 cut(s) 596
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 571
BsaXI ACNNNNNCTCC 6 cut(s) 193, 199, 223, 229, 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 34
Bse118I RCCGGY 1 cut(s) 571
Bse1I ACTGG 1 cut(s) 520
Bse21I CCTNAGG 1 cut(s) 479
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 66, 364
BseLI CCNNNNNNNGG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 350, 668
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 3 cut(s) 84, 207, 303
BseX3I CGGCCG 1 cut(s) 314
BseXI GCAGC 2 cut(s) 421, 664
Bsh1236I CGCG 2 cut(s) 161, 319
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 1 cut(s) 316
BshTI ACCGGT 1 cut(s) 571
BsiEI CGRYCG 1 cut(s) 317
BsiSI CCGG 3 cut(s) 572, 596, 738
BslI CCNNNNNNNGG 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 538
BsmBI CGTCTC 1 cut(s) 538
BsmI GAATGC 2 cut(s) 492, 622
BsnI GGCC 1 cut(s) 316
Bsp1286I GDGCHC 1 cut(s) 596
Bsp143I GATC 5 cut(s) 143, 265, 278, 378, 550
BspACI CCGC 6 cut(s) 159, 249, 317, 362, 495, 611
BspANI GGCC 1 cut(s) 316
BspCNI CTCAG 2 cut(s) 349, 669
BspFNI CGCG 2 cut(s) 161, 319
BspLI GGNNCC 2 cut(s) 26, 576
BspOI GCTAGC 1 cut(s) 567
BspPI GGATC 4 cut(s) 151, 273, 286, 386
BspQI GCTCTTC 2 cut(s) 36, 734
BspTI CTTAAG 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 571
BsrI ACTGG 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 571
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 5 cut(s) 143, 265, 278, 378, 550
BssNI GRCGYC 1 cut(s) 332
Bst4CI ACNGT 1 cut(s) 503
Bst6I CTCTTC 2 cut(s) 36, 734
BstACI GRCGYC 1 cut(s) 332
BstAFI CTTAAG 1 cut(s) 722
BstC8I GCNNGC 2 cut(s) 297, 565
BstDEI CTNAG 5 cut(s) 29, 336, 373, 479, 677
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 2 cut(s) 66, 364
BstFNI CGCG 2 cut(s) 161, 319
BstKTI GATC 5 cut(s) 146, 268, 281, 381, 553
BstMAI GTCTC 1 cut(s) 538
BstMBI GATC 5 cut(s) 143, 265, 278, 378, 550
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 1 cut(s) 619
BstNSI RCATGY 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 594
BstUI CGCG 2 cut(s) 161, 319
BstV1I GCAGC 2 cut(s) 421, 664
BstX2I RGATCY 1 cut(s) 265
BstYI RGATCY 1 cut(s) 265
BstZI CGGCCG 1 cut(s) 314
Bsu36I CCTNAGG 1 cut(s) 479
BsuRI GGCC 1 cut(s) 316
BtgI CCRYGG 1 cut(s) 261
BtrI CACGTC 1 cut(s) 526
BtsCI GGATG 2 cut(s) 66, 364
BtsIMutI CAGTG 1 cut(s) 513
Cac8I GCNNGC 2 cut(s) 297, 565
Cfr10I RCCGGY 1 cut(s) 571
CseI GACGC 2 cut(s) 308, 340
CspAI ACCGGT 1 cut(s) 571
CspCI CAANNNNNGTGG 2 cut(s) 250, 285
CviAII CATG 2 cut(s) 641, 704
DdeI CTNAG 5 cut(s) 29, 336, 373, 479, 677
DpnI GATC 5 cut(s) 145, 267, 280, 380, 552
DpnII GATC 5 cut(s) 143, 265, 278, 378, 550
EaeI YGGCCR 1 cut(s) 314
EagI CGGCCG 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 36, 734
EarI CTCTTC 2 cut(s) 36, 734
EclXI CGGCCG 1 cut(s) 314
Eco24I GRGCYC 1 cut(s) 596
Eco52I CGGCCG 1 cut(s) 314
Eco57I CTGAAG 1 cut(s) 443
Eco81I CCTNAGG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 596
Esp3I CGTCTC 1 cut(s) 538
FaeI CATG 2 cut(s) 644, 707
FaiI YATR 9 cut(s) 404, 416, 630, 632, 642, 684, 699, 705, 713
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 2 cut(s) 640, 703
FauI CCCGC 1 cut(s) 488
Fnu4HI GCNGC 4 cut(s) 317, 410, 611, 653
FokI GGATG 2 cut(s) 53, 371
FriOI GRGCYC 1 cut(s) 596
Fsp4HI GCNGC 4 cut(s) 317, 410, 611, 653
FspBI CTAG 4 cut(s) 101, 323, 435, 564
GluI GCNGC 4 cut(s) 317, 410, 611, 653
GsuI CTGGAG 2 cut(s) 39, 537
HaeIII GGCC 1 cut(s) 316
HapII CCGG 3 cut(s) 572, 596, 738
HgaI GACGC 2 cut(s) 308, 340
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 2 cut(s) 644, 707
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 5 cut(s) 257, 451, 510, 539, 689
HpaII CCGG 3 cut(s) 572, 596, 738
HphI GGTGA 2 cut(s) 161, 561
Hpy166II GTNNAC 1 cut(s) 330
Hpy188I TCNGA 7 cut(s) 122, 143, 241, 462, 538, 678, 694
Hpy188III TCNNGA 3 cut(s) 56, 276, 589
Hpy8I GTNNAC 1 cut(s) 330
HpyAV CCTTC 1 cut(s) 419
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 4 cut(s) 305, 349, 444, 525
HpyCH4V TGCA 2 cut(s) 409, 490
HpyF10VI GCNNNNNNNGC 1 cut(s) 619
HpyF3I CTNAG 5 cut(s) 29, 336, 373, 479, 677
HpySE526I ACGT 4 cut(s) 305, 349, 444, 525
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 2 cut(s) 644, 707
Kzo9I GATC 5 cut(s) 143, 265, 278, 378, 550
LguI GCTCTTC 2 cut(s) 36, 734
LpnPI CCDG 8 cut(s) 69, 185, 261, 309, 501, 585, 591, 609
Lsp1109I GCAGC 2 cut(s) 421, 664
LweI GCATC 3 cut(s) 349, 597, 708
MaeI CTAG 4 cut(s) 101, 323, 435, 564
MaeII ACGT 4 cut(s) 305, 349, 444, 525
MaeIII GTNAC 1 cut(s) 503
MalI GATC 5 cut(s) 145, 267, 280, 380, 552
MboI GATC 5 cut(s) 143, 265, 278, 378, 550
MboII GAAGA 8 cut(s) 20, 50, 53, 71, 449, 698, 721, 727
MflI RGATCY 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 596
MluCI AATT 3 cut(s) 19, 235, 742
MlyI GAGTC 1 cut(s) 460
MmeI TCCRAC 4 cut(s) 221, 230, 236, 346
MnlI CCTC 7 cut(s) 105, 196, 228, 281, 345, 512, 672
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 3 cut(s) 86, 723, 745
MspCI CTTAAG 1 cut(s) 722
MspI CCGG 3 cut(s) 572, 596, 738
MspR9I CCNGG 1 cut(s) 596
Mva1269I GAATGC 2 cut(s) 492, 622
MvnI CGCG 2 cut(s) 161, 319
MwoI GCNNNNNNNGC 1 cut(s) 619
NciI CCSGG 1 cut(s) 596
NdeII GATC 5 cut(s) 143, 265, 278, 378, 550
NheI GCTAGC 1 cut(s) 563
NlaIII CATG 2 cut(s) 644, 707
NlaIV GGNNCC 2 cut(s) 26, 576
NspI RCATGY 1 cut(s) 644
PciI ACATGT 1 cut(s) 640
PciSI GCTCTTC 2 cut(s) 36, 734
PcsI WCGNNNNNNNCGW 1 cut(s) 252
PctI GAATGC 2 cut(s) 492, 622
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 4 cut(s) 257, 510, 539, 689
PinAI ACCGGT 1 cut(s) 571
PkrI GCNGC 4 cut(s) 318, 411, 612, 654
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PscI ACATGT 1 cut(s) 640
Psp1406I AACGTT 3 cut(s) 305, 349, 444
PspN4I GGNNCC 2 cut(s) 26, 576
PsuI RGATCY 1 cut(s) 265
SapI GCTCTTC 2 cut(s) 36, 734
SaqAI TTAA 3 cut(s) 86, 723, 745
SatI GCNGC 4 cut(s) 317, 410, 611, 653
Sau3AI GATC 5 cut(s) 143, 265, 278, 378, 550
SchI GAGTC 1 cut(s) 460
ScrFI CCNGG 1 cut(s) 596
SduI GDGCHC 1 cut(s) 596
SfaNI GCATC 3 cut(s) 349, 597, 708
SmlI CTYRAG 2 cut(s) 589, 722
SmoI CTYRAG 2 cut(s) 589, 722
Sse9I AATT 3 cut(s) 19, 235, 742
SsiI CCGC 6 cut(s) 159, 249, 317, 362, 495, 611
SspMI CTAG 4 cut(s) 101, 323, 435, 564
StyD4I CCNGG 1 cut(s) 594
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 4 cut(s) 308, 352, 447, 528
TasI AATT 3 cut(s) 19, 235, 742
TauI GCSGC 2 cut(s) 319, 613
TfiI GAWTC 4 cut(s) 257, 510, 539, 689
Tru1I TTAA 3 cut(s) 86, 723, 745
Tru9I TTAA 3 cut(s) 86, 723, 745
TscAI CASTG 1 cut(s) 520
TseI GCWGC 2 cut(s) 409, 652
TspDTI ATGAA 3 cut(s) 248, 699, 728
TspGWI ACGGA 2 cut(s) 278, 522
TspRI CASTG 1 cut(s) 520
Vha464I CTTAAG 1 cut(s) 722
XapI RAATTY 1 cut(s) 235
XceI RCATGY 1 cut(s) 644
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 4 cut(s) 101, 323, 435, 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.