FvH4_6g25730
MYB Family

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
19705124 .. 19706722
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g25730.t1

Sequence Viewer

Length: 963 bp
ATGAGGGAAGACGACTCCAATTGGTTCTCCAGATGGGAAGAACAACTCCCATCTCCTGAGGAGCTTATGCCCTTATCCCAAACCCTAATAAGTCCTGATCTTGCTCTGGCCTTTGACATCAGATCAAATCCCAATCCAAATACCAATACCAATGCTAACGATAGCCCACAGCACACGCCCACACCTCCACCCCCACCCCCACCGGCCAGTTCTTTGCCTCCTGCTACTCCTGCCCATCCCAACTCGTCTGCTGATTTCGCTGACTCCGCTGACCTGGGCTCCGGAGGAGGAGGGCCCGGGGATGAGCCCGCCCGCACCCTTAAGCGGCCCCGCCTAGTGTGGACTCCACAGCTCCACAAGCGCTTTGTCGATGCCGTCGCCCATTTGGGGATCAAGAATGCCGTTCCCAAGACGATAATGCAGCTTATGAGTGTGGATGGGTTGACTAGGGAGAATGTTGCCAGCCATTTGCAGAAGTACCGCCTTTATCTCAAACGAATGCAGGGATTATCTGCTGGGGTTGGTGCTGGCGCCGGTGGAGGAGGTTCCGCTGATCCTGCCACTGATCATTTATTCGCCAGCTCACCAGTTCCAGCTCATTTCTTACACCCAGGAAGGCCTAATTCCGACCATTTCCTGCCGTTTGTTCCTGTGACTATTCAGCATCACCATCAGCAGCAACAGCAGCACATGACAGCAGCTGCCACCCATCCCCAGATGCAGCAGACTCCTCAGTATCACCATCACAGGCAGCCCCAGGTGGGGCATTTTGGTTCCCCACCAAATCCAAACGGTCAATTTGAGCATCCGTTCCTGGCTAGGCAGTCTCAGCCAGTGCATAGGATGGGGGCACCAATTCACAGTCCAGCAGTGCCAGGGTATATTGAGGACATGGAATCAGCGAATGCAACTGGTGCTACTGGCAGGAAAGTTCTTACTCTTTTTCCTACTGGGGATAATTGA

Protein Analysis

321

Amino Acids

34.6

Weight (kDa)

6.59

Isoelectric Point (pI)

59.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 112 - 161 1.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012989)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40970 AT3G10760 AT5G05090
fragaria_vesca FvH4_6g25730
malus_domestica MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica Prupe.7G027500_v2.0.a1
pyrus_communis pycom12g07980
rosa_chinensis RchiOBHm_Chr2g0125991
rosa_laevigata RLG00000018885
rosa_multiflora Rmu_sc0006201.1_g000002
rosa_roxburghii Rroxscaffold_2G00117470
rosa_rugosa Rorug02G0260200
rosa_samantha Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana Rw2G025740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 530, 850
AccIII TCCGGA 1 cut(s) 281
AciI CCGC 7 cut(s) 267, 309, 313, 325, 331, 481, 549
AclWI GGATC 2 cut(s) 398, 548
AcoI YGGCCR 1 cut(s) 204
AcyI GRCGYC 1 cut(s) 531
AfaI GTAC 1 cut(s) 479
AfeI AGCGCT 1 cut(s) 362
AfiI CCNNNNNNNGG 4 cut(s) 324, 387, 761, 762
AflII CTTAAG 1 cut(s) 320
AjnI CCWGG 5 cut(s) 273, 610, 756, 813, 874
AluBI AGCT 6 cut(s) 64, 352, 424, 582, 596, 701
AluI AGCT 6 cut(s) 64, 352, 424, 582, 596, 701
Alw26I GTCTC 1 cut(s) 831
AlwI GGATC 2 cut(s) 398, 548
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 281
Aor51HI AGCGCT 1 cut(s) 362
AoxI GGCC 5 cut(s) 108, 204, 293, 326, 617
ApaI GGGCCC 1 cut(s) 297
ApeKI GCWGC 7 cut(s) 421, 676, 685, 698, 701, 721, 751
AspLEI GCGC 2 cut(s) 363, 533
AspS9I GGNCC 3 cut(s) 293, 294, 327
AsuC2I CCSGG 2 cut(s) 297, 298
AsuHPI GGTGA 3 cut(s) 576, 659, 731
AvaI CYCGRG 1 cut(s) 296
AxyI CCTNAGG 1 cut(s) 57
BaeGI GKGCMC 2 cut(s) 297, 853
BanI GGYRCC 2 cut(s) 530, 850
BanII GRGCYC 3 cut(s) 281, 297, 309
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 7 cut(s) 433, 688, 688, 697, 710, 733, 763
BccI CCATC 8 cut(s) 27, 58, 243, 431, 678, 717, 750, 838
BceAI ACGGC 3 cut(s) 359, 386, 625
BciT130I CCWGG 5 cut(s) 275, 612, 758, 815, 876
BclI TGATCA 1 cut(s) 565
BcnI CCSGG 2 cut(s) 297, 298
BcoDI GTCTC 1 cut(s) 831
BfaI CTAG 3 cut(s) 335, 447, 819
BfoI RGCGCY 2 cut(s) 364, 534
BfrI CTTAAG 1 cut(s) 320
BisI GCNGC 8 cut(s) 326, 422, 677, 686, 699, 702, 722, 752
BlsI GCNGC 8 cut(s) 327, 423, 678, 687, 700, 703, 723, 753
Bme1390I CCNGG 7 cut(s) 275, 297, 298, 612, 758, 815, 876
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 293, 294, 327
BmiI GGNNCC 7 cut(s) 280, 295, 329, 532, 547, 775, 852
BmrFI CCNGG 7 cut(s) 275, 297, 298, 612, 758, 815, 876
BmrI ACTGGG 1 cut(s) 960
BmsI GCATC 4 cut(s) 361, 673, 708, 814
BmuI ACTGGG 1 cut(s) 960
BpiI GAAGAC 1 cut(s) 15
BpmI CTGGAG 1 cut(s) 13
BpuMI CCSGG 2 cut(s) 297, 298
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 6 cut(s) 274, 296, 297, 610, 756, 875
BsaWI WCCGGW 1 cut(s) 281
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bsc4I CCNNNNNNNGG 4 cut(s) 324, 387, 761, 762
Bse118I RCCGGY 2 cut(s) 202, 533
Bse1I ACTGG 6 cut(s) 207, 587, 833, 916, 925, 955
Bse21I CCTNAGG 1 cut(s) 57
BseAI TCCGGA 1 cut(s) 281
BseBI CCWGG 5 cut(s) 275, 612, 758, 815, 876
BseDI CCNNGG 6 cut(s) 274, 296, 297, 610, 756, 875
BseGI GGATG 6 cut(s) 235, 307, 442, 709, 805, 849
BseLI CCNNNNNNNGG 4 cut(s) 324, 387, 761, 762
BseMII CTCAG 3 cut(s) 48, 746, 842
BseNI ACTGG 6 cut(s) 207, 587, 833, 916, 925, 955
BseRI GAGGAG 5 cut(s) 74, 300, 303, 555, 720
BseSI GKGCMC 2 cut(s) 297, 853
BseXI GCAGC 7 cut(s) 433, 688, 688, 697, 710, 733, 763
BseYI CCCAGC 1 cut(s) 515
BshFI GGCC 5 cut(s) 110, 206, 295, 328, 619
BshNI GGYRCC 2 cut(s) 530, 850
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 4 cut(s) 203, 282, 297, 534
BslI CCNNNNNNNGG 4 cut(s) 324, 387, 761, 762
BsmAI GTCTC 1 cut(s) 831
BsmI GAATGC 3 cut(s) 403, 504, 910
BsnI GGCC 5 cut(s) 110, 206, 295, 328, 619
BsoBI CYCGRG 1 cut(s) 296
Bsp120I GGGCCC 1 cut(s) 293
Bsp1286I GDGCHC 4 cut(s) 281, 297, 309, 853
Bsp13I TCCGGA 1 cut(s) 281
Bsp143I GATC 5 cut(s) 97, 122, 390, 553, 565
BspACI CCGC 7 cut(s) 267, 309, 313, 325, 331, 481, 549
BspANI GGCC 5 cut(s) 110, 206, 295, 328, 619
BspCNI CTCAG 3 cut(s) 49, 745, 841
BspEI TCCGGA 1 cut(s) 281
BspLI GGNNCC 7 cut(s) 280, 295, 329, 532, 547, 775, 852
BspPI GGATC 2 cut(s) 398, 548
BspT107I GGYRCC 2 cut(s) 530, 850
BspTI CTTAAG 1 cut(s) 320
BsrFI RCCGGY 2 cut(s) 202, 533
BsrI ACTGG 6 cut(s) 207, 587, 833, 916, 925, 955
BssAI RCCGGY 2 cut(s) 202, 533
BssECI CCNNGG 6 cut(s) 274, 296, 297, 610, 756, 875
BssMI GATC 5 cut(s) 97, 122, 390, 553, 565
BssNI GRCGYC 1 cut(s) 531
Bst2UI CCWGG 5 cut(s) 275, 612, 758, 815, 876
Bst4CI ACNGT 2 cut(s) 794, 863
BstACI GRCGYC 1 cut(s) 531
BstAFI CTTAAG 1 cut(s) 320
BstAPI GCANNNNNTGC 1 cut(s) 914
BstC8I GCNNGC 5 cut(s) 309, 313, 463, 529, 580
BstDEI CTNAG 3 cut(s) 57, 732, 828
BstF5I GGATG 6 cut(s) 235, 307, 442, 709, 805, 849
BstH2I RGCGCY 2 cut(s) 364, 534
BstHHI GCGC 2 cut(s) 363, 533
BstKTI GATC 5 cut(s) 100, 125, 393, 556, 568
BstMAI GTCTC 1 cut(s) 831
BstMBI GATC 5 cut(s) 97, 122, 390, 553, 565
BstMWI GCNNNNNNNGC 9 cut(s) 230, 257, 266, 358, 557, 682, 685, 829, 914
BstNI CCWGG 5 cut(s) 275, 612, 758, 815, 876
BstSCI CCNGG 7 cut(s) 273, 295, 296, 610, 756, 813, 874
BstSLI GKGCMC 2 cut(s) 297, 853
BstV1I GCAGC 7 cut(s) 433, 688, 688, 697, 710, 733, 763
BstV2I GAAGAC 1 cut(s) 15
Bsu36I CCTNAGG 1 cut(s) 57
BsuRI GGCC 5 cut(s) 110, 206, 295, 328, 619
BtsCI GGATG 6 cut(s) 235, 307, 442, 709, 805, 849
BtsI GCAGTG 1 cut(s) 876
BtsIMutI CAGTG 3 cut(s) 561, 840, 876
Cac8I GCNNGC 5 cut(s) 309, 313, 463, 529, 580
CaiI CAGNNNCTG 1 cut(s) 701
CfoI GCGC 2 cut(s) 363, 533
Cfr10I RCCGGY 2 cut(s) 202, 533
Cfr13I GGNCC 3 cut(s) 293, 294, 327
Cfr9I CCCGGG 1 cut(s) 296
Csp6I GTAC 1 cut(s) 478
CviAII CATG 2 cut(s) 691, 892
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 3 cut(s) 57, 732, 828
DinI GGCGCC 1 cut(s) 532
DpnI GATC 5 cut(s) 99, 124, 392, 555, 567
DpnII GATC 5 cut(s) 97, 122, 390, 553, 565
EaeI YGGCCR 1 cut(s) 204
Eco147I AGGCCT 1 cut(s) 619
Eco24I GRGCYC 3 cut(s) 281, 297, 309
Eco47III AGCGCT 1 cut(s) 362
Eco81I CCTNAGG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 296
EcoO109I RGGNCCY 1 cut(s) 293
EcoRII CCWGG 5 cut(s) 273, 610, 756, 813, 874
EcoT38I GRGCYC 3 cut(s) 281, 297, 309
EgeI GGCGCC 1 cut(s) 532
EheI GGCGCC 1 cut(s) 532
FaeI CATG 2 cut(s) 694, 895
FaiI YATR 6 cut(s) 68, 428, 692, 840, 882, 893
FatI CATG 2 cut(s) 690, 891
FauI CCCGC 3 cut(s) 316, 320, 338
FbaI TGATCA 1 cut(s) 565
Fnu4HI GCNGC 8 cut(s) 326, 422, 677, 686, 699, 702, 722, 752
FokI GGATG 6 cut(s) 222, 314, 449, 696, 792, 856
FriOI GRGCYC 3 cut(s) 281, 297, 309
Fsp4HI GCNGC 8 cut(s) 326, 422, 677, 686, 699, 702, 722, 752
FspBI CTAG 3 cut(s) 335, 447, 819
GlaI GCGC 2 cut(s) 362, 532
GluI GCNGC 8 cut(s) 326, 422, 677, 686, 699, 702, 722, 752
GsaI CCCAGC 1 cut(s) 519
GsuI CTGGAG 1 cut(s) 13
HaeII RGCGCY 2 cut(s) 364, 534
HaeIII GGCC 5 cut(s) 110, 206, 295, 328, 619
HapII CCGG 4 cut(s) 203, 282, 297, 534
HhaI GCGC 2 cut(s) 363, 533
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 2 cut(s) 694, 895
Hin6I GCGC 2 cut(s) 361, 531
HinP1I GCGC 2 cut(s) 361, 531
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 5 cut(s) 14, 263, 343, 727, 896
HpaII CCGG 4 cut(s) 203, 282, 297, 534
HphI GGTGA 3 cut(s) 576, 659, 731
Hpy166II GTNNAC 2 cut(s) 342, 444
Hpy188I TCNGA 2 cut(s) 122, 628
Hpy188III TCNNGA 5 cut(s) 30, 56, 95, 282, 394
Hpy8I GTNNAC 2 cut(s) 342, 444
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 1 cut(s) 609
HpyCH4III ACNGT 2 cut(s) 794, 863
HpyCH4V TGCA 6 cut(s) 421, 472, 502, 721, 838, 908
HpyF10VI GCNNNNNNNGC 9 cut(s) 230, 257, 266, 358, 557, 682, 685, 829, 914
HpyF3I CTNAG 3 cut(s) 57, 732, 828
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 2 cut(s) 694, 895
HspAI GCGC 2 cut(s) 361, 531
KasI GGCGCC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 281
Ksp22I TGATCA 1 cut(s) 565
Kzo9I GATC 5 cut(s) 97, 122, 390, 553, 565
LmnI GCTCC 3 cut(s) 61, 284, 357
Lsp1109I GCAGC 7 cut(s) 433, 688, 688, 697, 710, 733, 763
LweI GCATC 4 cut(s) 361, 673, 708, 814
MaeI CTAG 3 cut(s) 335, 447, 819
MaeIII GTNAC 1 cut(s) 652
MalI GATC 5 cut(s) 99, 124, 392, 555, 567
MboI GATC 5 cut(s) 97, 122, 390, 553, 565
MboII GAAGA 2 cut(s) 20, 50
MfeI CAATTG 1 cut(s) 19
MhlI GDGCHC 4 cut(s) 281, 297, 309, 853
MluCI AATT 5 cut(s) 19, 622, 797, 855, 958
Mly113I GGCGCC 1 cut(s) 531
MlyI GAGTC 4 cut(s) 8, 257, 337, 721
MmeI TCCRAC 1 cut(s) 651
MroI TCCGGA 1 cut(s) 281
MseI TTAA 1 cut(s) 321
MspA1I CMGCKG 3 cut(s) 269, 551, 701
MspCI CTTAAG 1 cut(s) 320
MspI CCGG 4 cut(s) 203, 282, 297, 534
MspR9I CCNGG 7 cut(s) 275, 297, 298, 612, 758, 815, 876
MunI CAATTG 1 cut(s) 19
Mva1269I GAATGC 3 cut(s) 403, 504, 910
MvaI CCWGG 5 cut(s) 275, 612, 758, 815, 876
MwoI GCNNNNNNNGC 9 cut(s) 230, 257, 266, 358, 557, 682, 685, 829, 914
NarI GGCGCC 1 cut(s) 531
NciI CCSGG 2 cut(s) 297, 298
NdeII GATC 5 cut(s) 97, 122, 390, 553, 565
NlaIII CATG 2 cut(s) 694, 895
NlaIV GGNNCC 7 cut(s) 280, 295, 329, 532, 547, 775, 852
NmuCI GTSAC 1 cut(s) 652
PceI AGGCCT 1 cut(s) 619
PctI GAATGC 3 cut(s) 403, 504, 910
PfeI GAWTC 1 cut(s) 896
PkrI GCNGC 8 cut(s) 327, 423, 678, 687, 700, 703, 723, 753
PleI GAGTC 4 cut(s) 8, 257, 337, 721
PluTI GGCGCC 1 cut(s) 534
PpsI GAGTC 4 cut(s) 8, 257, 337, 721
Psp6I CCWGG 5 cut(s) 273, 610, 756, 813, 874
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 5 cut(s) 273, 610, 756, 813, 874
PspN4I GGNNCC 7 cut(s) 280, 295, 329, 532, 547, 775, 852
PspOMI GGGCCC 1 cut(s) 293
PspPI GGNCC 3 cut(s) 293, 294, 327
PstNI CAGNNNCTG 1 cut(s) 701
PvuII CAGCTG 1 cut(s) 701
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 8 cut(s) 326, 422, 677, 686, 699, 702, 722, 752
Sau3AI GATC 5 cut(s) 97, 122, 390, 553, 565
Sau96I GGNCC 3 cut(s) 293, 294, 327
SchI GAGTC 4 cut(s) 8, 257, 337, 721
ScrFI CCNGG 7 cut(s) 275, 297, 298, 612, 758, 815, 876
SduI GDGCHC 4 cut(s) 281, 297, 309, 853
SfaNI GCATC 4 cut(s) 361, 673, 708, 814
SfoI GGCGCC 1 cut(s) 532
SgrAI CRCCGGYG 1 cut(s) 533
SmaI CCCGGG 1 cut(s) 298
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 5 cut(s) 19, 622, 797, 855, 958
SseBI AGGCCT 1 cut(s) 619
SsiI CCGC 7 cut(s) 267, 309, 313, 325, 331, 481, 549
SspDI GGCGCC 1 cut(s) 530
SspMI CTAG 3 cut(s) 335, 447, 819
StuI AGGCCT 1 cut(s) 619
StyD4I CCNGG 7 cut(s) 273, 295, 296, 610, 756, 813, 874
TaaI ACNGT 2 cut(s) 794, 863
TaqI TCGA 1 cut(s) 369
TasI AATT 5 cut(s) 19, 622, 797, 855, 958
TauI GCSGC 1 cut(s) 328
TfiI GAWTC 1 cut(s) 896
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 3 cut(s) 568, 840, 876
TseFI GTSAC 1 cut(s) 652
TseI GCWGC 7 cut(s) 421, 676, 685, 698, 701, 721, 751
Tsp45I GTSAC 1 cut(s) 652
TspGWI ACGGA 1 cut(s) 798
TspMI CCCGGG 1 cut(s) 296
TspRI CASTG 3 cut(s) 568, 840, 876
Vha464I CTTAAG 1 cut(s) 320
XmaI CCCGGG 1 cut(s) 296
XspI CTAG 3 cut(s) 335, 447, 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.