Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Reverse (-)

41961361 .. 41963835

Gene Structure 2475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG326400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAGGGAAGACGACTCCAATTGGTTCTCAAGATGGGAAGAACAACTCCCATCTCCTGAGGAGCTTATGCCCTTGTCCCAAACCCTAATAAGTCCTGATCTTGCTCTGGCTTTTGACATCAGATCAAACCCCAATCCTACTCCCAATCCCATTACCAATACCAATACCACCAGTAGCCCACAGCACGCGCCCACACCTCCACCCCCACCGGTCAGTTCTTTGCCTCCTGCTACCCCGACCCACCCCAACTCCTCTGCTGATTTTGCCGATTCTGCTGACTTGGGCTCCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGCCCGGCGATGAGCCTGCCCGCACCCTTAAGCGGCCCCGCCTGGTGTGGACCCCACAGCTCCACAAGCGCTTTGTGGATGCCGTCGCCCACTTGGGGATCAAGAATGCCGTCCCCAAGACCATAATGCAGCTGATGAGCGTGGATGGGTTGACTAGGGAGAACGTTGCCAGCCATTTGCAGAAGTACCGCCTTTACCTCAAACGAATGCAGGGATTATCTGCTGGGACTGGTGGCGGCGGCGGCGGTGGAGGCTCCGCTGATCCTGCCACTGACCATTTATTTGCCAGCTCACCAGTTCCAGCTCATTTCTTACACCCAGGAAGGCCCAATTCCGACCATTTCCTGCCGTTTGTTCCGGTGGCTCTGCAGCACCACCACCAGCAGCAGCAGCACATGGCAGCAGCTGCGGCCGTAGCTGCCACCCATCCGCAGATGCAGCAGACTCCTCAGTATCACCATCACAGGCAGCCGCAGGTGGGGCATTTTGGCTCTCCACCAAATCCAAATGGGCAATTTGAACATCCATTCCTGGCGAGGCAGTCACAGGCAGTGCATAGGATGGGGGCACCAATTCACAGTCCAGCTGTGCCAGGGTATATTGAGGACATGGAATCAGCTAATGCAACTGGTGCAACTGGCAGGAAAGTTCTTACTCTTTTTCCTACTGGGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

333

Amino Acids

35.37

Weight (kDa)

6.59

Isoelectric Point (pI)

60.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	122 - 171	1.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	787
Acc36I	ACCTGC	1 cut(s)	787
AccB1I	GGYRCC	1 cut(s)	889
AccII	CGCG	1 cut(s)	188
AclI	AACGTT	1 cut(s)	486
AclWI	GGATC	2 cut(s)	428, 578
AcoI	YGGCCR	1 cut(s)	732
AfaI	GTAC	1 cut(s)	509
AfeI	AGCGCT	1 cut(s)	392
AfiI	CCNNNNNNNGG	3 cut(s)	354, 417, 800
AflII	CTTAAG	1 cut(s)	350
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	842
AjnI	CCWGG	4 cut(s)	363, 640, 852, 913
AloI	GAACNNNNNNTCC	2 cut(s)	834, 866
AluBI	AGCT	9 cut(s)	64, 382, 454, 612, 626, 728, 740, 908, 941
AluI	AGCT	9 cut(s)	64, 382, 454, 612, 626, 728, 740, 908, 941
AlwI	GGATC	2 cut(s)	428, 578
AlwNI	CAGNNNCTG	1 cut(s)	728
Aor51HI	AGCGCT	1 cut(s)	392
AoxI	GGCC	3 cut(s)	356, 647, 732
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	3 cut(s)	190, 325, 393
AspS9I	GGNCC	3 cut(s)	357, 372, 648
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	2 cut(s)	606, 770
AvaII	GGWCC	1 cut(s)	372
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	892
BanI	GGYRCC	1 cut(s)	889
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	15
BccI	CCATC	6 cut(s)	27, 58, 461, 756, 789, 877
BceAI	ACGGC	4 cut(s)	389, 416, 655, 719
BcgI	CGANNNNNNTGC	2 cut(s)	320, 354
BciT130I	CCWGG	4 cut(s)	365, 642, 854, 915
BcnI	CCSGG	1 cut(s)	327
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	689
BfoI	RGCGCY	2 cut(s)	326, 394
BfrI	CTTAAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	787
Bme1390I	CCNGG	5 cut(s)	327, 365, 642, 854, 915
Bme18I	GGWCC	1 cut(s)	372
BmgT120I	GGNCC	3 cut(s)	357, 372, 648
BmiI	GGNNCC	5 cut(s)	286, 359, 374, 577, 891
BmrFI	CCNGG	5 cut(s)	327, 365, 642, 854, 915
BmrI	ACTGGG	1 cut(s)	999
BmsI	GCATC	2 cut(s)	391, 747
BmuI	ACTGGG	1 cut(s)	999
BpiI	GAAGAC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	640, 914
BsaWI	WCCGGW	2 cut(s)	208, 679
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	354, 417, 800
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	6 cut(s)	171, 556, 617, 955, 964, 994
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	4 cut(s)	365, 642, 854, 915
BseDI	CCNNGG	2 cut(s)	640, 914
BseGI	GGATG	6 cut(s)	406, 472, 748, 844, 888, 1000
BseLI	CCNNNNNNNGG	3 cut(s)	354, 417, 800
BseMII	CTCAG	2 cut(s)	48, 785
BseNI	ACTGG	6 cut(s)	171, 556, 617, 955, 964, 994
BseSI	GKGCMC	1 cut(s)	892
BseX3I	CGGCCG	1 cut(s)	732
BseYI	CCCAGC	1 cut(s)	545
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	735
BshFI	GGCC	3 cut(s)	358, 649, 734
BshNI	GGYRCC	1 cut(s)	889
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	735
BsiSI	CCGG	4 cut(s)	209, 288, 327, 680
BslFI	GGGAC	3 cut(s)	61, 419, 562
BslI	CCNNNNNNNGG	3 cut(s)	354, 417, 800
BsmFI	GGGAC	3 cut(s)	61, 419, 562
BsmI	GAATGC	2 cut(s)	433, 534
BsnI	GGCC	3 cut(s)	358, 649, 734
Bsp1286I	GDGCHC	2 cut(s)	287, 892
Bsp143I	GATC	4 cut(s)	97, 122, 420, 583
BspANI	GGCC	3 cut(s)	358, 649, 734
BspCNI	CTCAG	2 cut(s)	49, 784
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	5 cut(s)	286, 359, 374, 577, 891
BspMAI	CTGCAG	1 cut(s)	693
BspMI	ACCTGC	1 cut(s)	787
BspPI	GGATC	2 cut(s)	428, 578
BspT107I	GGYRCC	1 cut(s)	889
BspTI	CTTAAG	1 cut(s)	350
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	6 cut(s)	171, 556, 617, 955, 964, 994
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	640, 914
BssMI	GATC	4 cut(s)	97, 122, 420, 583
Bst2UI	CCWGG	4 cut(s)	365, 642, 854, 915
Bst4CI	ACNGT	1 cut(s)	902
BstAFI	CTTAAG	1 cut(s)	350
BstAPI	GCANNNNNTGC	2 cut(s)	728, 953
BstC8I	GCNNGC	5 cut(s)	186, 339, 343, 493, 610
BstDEI	CTNAG	2 cut(s)	57, 771
BstF5I	GGATG	6 cut(s)	406, 472, 748, 844, 888, 1000
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	2 cut(s)	326, 394
BstHHI	GCGC	3 cut(s)	190, 325, 393
BstKTI	GATC	4 cut(s)	100, 125, 423, 586
BstMBI	GATC	4 cut(s)	97, 122, 420, 583
BstMCI	CGRYCG	1 cut(s)	735
BstNI	CCWGG	4 cut(s)	365, 642, 854, 915
BstSCI	CCNGG	5 cut(s)	325, 363, 640, 852, 913
BstSFI	CTRYAG	1 cut(s)	689
BstSLI	GKGCMC	1 cut(s)	892
BstUI	CGCG	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	15
BstZI	CGGCCG	1 cut(s)	732
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	358, 649, 734
BtgZI	GCGATG	1 cut(s)	345
BtsCI	GGATG	6 cut(s)	406, 472, 748, 844, 888, 1000
BtsI	GCAGTG	1 cut(s)	879
BtsIMutI	CAGTG	2 cut(s)	591, 879
BveI	ACCTGC	1 cut(s)	787
Cac8I	GCNNGC	5 cut(s)	186, 339, 343, 493, 610
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	3 cut(s)	190, 325, 393
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	357, 372, 648
Csp6I	GTAC	1 cut(s)	508
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	718, 931
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	2 cut(s)	57, 771
DpnI	GATC	4 cut(s)	99, 124, 422, 585
DpnII	GATC	4 cut(s)	97, 122, 420, 583
EaeI	YGGCCR	1 cut(s)	732
EagI	CGGCCG	1 cut(s)	732
EciI	GGCGGA	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	732
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	372
Eco47III	AGCGCT	1 cut(s)	392
Eco52I	CGGCCG	1 cut(s)	732
Eco81I	CCTNAGG	1 cut(s)	57
EcoRII	CCWGG	4 cut(s)	363, 640, 852, 913
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	2 cut(s)	721, 934
FaiI	YATR	6 cut(s)	68, 446, 719, 879, 921, 932
FaqI	GGGAC	3 cut(s)	61, 419, 562
FatI	CATG	2 cut(s)	717, 930
FauI	CCCGC	2 cut(s)	350, 368
FokI	GGATG	5 cut(s)	413, 479, 735, 831, 895
FriOI	GRGCYC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	3 cut(s)	189, 324, 392
GsaI	CCCAGC	1 cut(s)	549
HaeII	RGCGCY	2 cut(s)	326, 394
HaeIII	GGCC	3 cut(s)	358, 649, 734
HapII	CCGG	4 cut(s)	209, 288, 327, 680
HhaI	GCGC	3 cut(s)	190, 325, 393
Hin1II	CATG	2 cut(s)	721, 934
Hin6I	GCGC	3 cut(s)	188, 323, 391
HinP1I	GCGC	3 cut(s)	188, 323, 391
HincII	GTYRAC	1 cut(s)	474
HindII	GTYRAC	1 cut(s)	474
HinfI	GANTC	4 cut(s)	14, 269, 766, 935
HpaII	CCGG	4 cut(s)	209, 288, 327, 680
HphI	GGTGA	2 cut(s)	606, 770
Hpy166II	GTNNAC	2 cut(s)	372, 474
Hpy188I	TCNGA	2 cut(s)	122, 658
Hpy188III	TCNNGA	4 cut(s)	30, 56, 95, 424
Hpy8I	GTNNAC	2 cut(s)	372, 474
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	1 cut(s)	639
HpyCH4III	ACNGT	1 cut(s)	902
HpyCH4IV	ACGT	1 cut(s)	486
HpyCH4V	TGCA	8 cut(s)	451, 502, 532, 691, 760, 877, 947, 956
HpyF3I	CTNAG	2 cut(s)	57, 771
HpySE526I	ACGT	1 cut(s)	486
Hsp92II	CATG	2 cut(s)	721, 934
HspAI	GCGC	3 cut(s)	188, 323, 391
Kzo9I	GATC	4 cut(s)	97, 122, 420, 583
LmnI	GCTCC	5 cut(s)	61, 290, 320, 387, 581
LweI	GCATC	2 cut(s)	391, 747
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	864
MalI	GATC	4 cut(s)	99, 124, 422, 585
MboI	GATC	4 cut(s)	97, 122, 420, 583
MboII	GAAGA	2 cut(s)	20, 50
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	287, 892
MluCI	AATT	4 cut(s)	19, 652, 836, 894
MlyI	GAGTC	2 cut(s)	8, 760
MmeI	TCCRAC	1 cut(s)	681
MseI	TTAA	1 cut(s)	351
MspA1I	CMGCKG	4 cut(s)	454, 581, 728, 908
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	4 cut(s)	209, 288, 327, 680
MspR9I	CCNGG	5 cut(s)	327, 365, 642, 854, 915
MunI	CAATTG	1 cut(s)	19
Mva1269I	GAATGC	2 cut(s)	433, 534
MvaI	CCWGG	4 cut(s)	365, 642, 854, 915
MvnI	CGCG	1 cut(s)	188
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	4 cut(s)	97, 122, 420, 583
NlaIII	CATG	2 cut(s)	721, 934
NlaIV	GGNNCC	5 cut(s)	286, 359, 374, 577, 891
NmuCI	GTSAC	1 cut(s)	864
PaqCI	CACCTGC	1 cut(s)	787
PctI	GAATGC	2 cut(s)	433, 534
PfeI	GAWTC	2 cut(s)	269, 935
PinAI	ACCGGT	1 cut(s)	208
PleI	GAGTC	2 cut(s)	8, 760
PpsI	GAGTC	2 cut(s)	8, 760
Psp1406I	AACGTT	1 cut(s)	486
Psp6I	CCWGG	4 cut(s)	363, 640, 852, 913
PspFI	CCCAGC	1 cut(s)	545
PspGI	CCWGG	4 cut(s)	363, 640, 852, 913
PspN4I	GGNNCC	5 cut(s)	286, 359, 374, 577, 891
PspPI	GGNCC	3 cut(s)	357, 372, 648
PstI	CTGCAG	1 cut(s)	693
PstNI	CAGNNNCTG	1 cut(s)	728
PvuII	CAGCTG	3 cut(s)	454, 728, 908
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SaqAI	TTAA	1 cut(s)	351
Sau3AI	GATC	4 cut(s)	97, 122, 420, 583
Sau96I	GGNCC	3 cut(s)	357, 372, 648
SchI	GAGTC	2 cut(s)	8, 760
ScrFI	CCNGG	5 cut(s)	327, 365, 642, 854, 915
SduI	GDGCHC	2 cut(s)	287, 892
SfaNI	GCATC	2 cut(s)	391, 747
SfcI	CTRYAG	1 cut(s)	689
SinI	GGWCC	1 cut(s)	372
SmlI	CTYRAG	2 cut(s)	28, 350
SmoI	CTYRAG	2 cut(s)	28, 350
Sse9I	AATT	4 cut(s)	19, 652, 836, 894
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	5 cut(s)	325, 363, 640, 852, 913
TaaI	ACNGT	1 cut(s)	902
TaiI	ACGT	1 cut(s)	489
TasI	AATT	4 cut(s)	19, 652, 836, 894
TauI	GCSGC	6 cut(s)	358, 561, 564, 567, 734, 796
TfiI	GAWTC	2 cut(s)	269, 935
Tru1I	TTAA	1 cut(s)	351
Tru9I	TTAA	1 cut(s)	351
TscAI	CASTG	2 cut(s)	598, 879
TseFI	GTSAC	1 cut(s)	864
Tsp45I	GTSAC	1 cut(s)	864
TspRI	CASTG	2 cut(s)	598, 879
Vha464I	CTTAAG	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	372
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.