Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Reverse (-)

45079710 .. 45082474

Gene Structure 2765 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG318000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGGGAAGACGACTCCAATTGGTTCTCAAGATGGGAAGAACAACTCCCATCTCCTGAGGAGCTTATGCCCTTGTCCCAAACCCTAATAAGTCCTGATCTTGCTCTGGCTTTTGACATCAGATCAAACCCCAATCCTACTCCCAATCCCATTACCAATACCAATACCACCAGTAGCCCACAGCACGCGCCCACACCTCCACCCCCACCGGTCAGTTCTTTGCCTCCTGCTACCCCGACCCACCCCAACTCCTCTGCTGATTTTGCCGATTCTGCTGACTTGGGCTCCGGCGGAGGAGGAGGAGGAGGAGCGCCCGGCGATGAGCCTGCCCGCACCCTTAAGCGGCCCCGCCTGGTGTGGACCCCACAGCTCCACAAGCGCTTTGTGGATGCCGTCGCCCACTTGGGGATCAAGAATGCCGTCCCCAAGACCATAATGCAGTTGATGAGTGTGGATGGGTTGACTAGGGAGAATGTTGCCAGCCATTTGCAGAAGTACCGCCTTTATCTCAAACGAATGCAGGGATTATCTGCTGGGACTGGTGGCGGCGGCGGCGGTGGAGGTTCGGCTGATCCTGCCACTGACCATTTATTTGCCAGCTCACCAGTTCCAGCTCATTTCTTACACCCAGGAAGGCCCAATTCCGACCATTTCCTGCCGTTTGTTCCGGTGGCTCTGCAGCATCACCATCAGCAGCAGCAGCAGCAGCAGCACATGGCAGCAGCTGCGGCCGTAGCTGCCACCCATCCGCAGATGCAGCAGACTCCTCAGTATCACCATCACAGGCAGCCACAGGTGGGGCATTTTGGCTCTCCACCAAATCCAAATGGGCAATTTGAACATTCATTCCTGGCGAGGCAGTCACAGGCAGTGCATAGGATGGGGGCACCAATTCACAGTACAGCTGTGCCAGGGTATATTGAGGACATGGAATCAGCTAATGCAACTGGTGCAACTGGCAGGAAAGTTCTTACTCTTTTTCCTACTGGGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

332

Amino Acids

35.53

Weight (kDa)

6.59

Isoelectric Point (pI)

58.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	118 - 167	1.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	886
AccII	CGCG	1 cut(s)	188
AclWI	GGATC	2 cut(s)	416, 566
AcoI	YGGCCR	1 cut(s)	729
AfaI	GTAC	2 cut(s)	497, 901
AfeI	AGCGCT	1 cut(s)	380
AfiI	CCNNNNNNNGG	3 cut(s)	342, 405, 797
AflII	CTTAAG	1 cut(s)	338
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	839
AjnI	CCWGG	4 cut(s)	351, 628, 849, 910
AloI	GAACNNNNNNTCC	2 cut(s)	831, 863
AluBI	AGCT	8 cut(s)	64, 370, 600, 614, 725, 737, 905, 938
AluI	AGCT	8 cut(s)	64, 370, 600, 614, 725, 737, 905, 938
AlwI	GGATC	2 cut(s)	416, 566
AlwNI	CAGNNNCTG	1 cut(s)	725
Aor51HI	AGCGCT	1 cut(s)	380
AoxI	GGCC	3 cut(s)	344, 635, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	3 cut(s)	190, 313, 381
AspS9I	GGNCC	3 cut(s)	345, 360, 636
AsuC2I	CCSGG	1 cut(s)	315
AsuHPI	GGTGA	3 cut(s)	594, 677, 767
AvaII	GGWCC	1 cut(s)	360
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	889
BanI	GGYRCC	1 cut(s)	886
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	15
BccI	CCATC	7 cut(s)	27, 58, 449, 696, 753, 786, 874
BceAI	ACGGC	4 cut(s)	377, 404, 643, 716
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BciT130I	CCWGG	4 cut(s)	353, 630, 851, 912
BcnI	CCSGG	1 cut(s)	315
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	1 cut(s)	677
BfoI	RGCGCY	2 cut(s)	314, 382
BfrI	CTTAAG	1 cut(s)	338
Bme1390I	CCNGG	5 cut(s)	315, 353, 630, 851, 912
Bme18I	GGWCC	1 cut(s)	360
BmgT120I	GGNCC	3 cut(s)	345, 360, 636
BmiI	GGNNCC	4 cut(s)	286, 347, 362, 888
BmrFI	CCNGG	5 cut(s)	315, 353, 630, 851, 912
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	3 cut(s)	379, 691, 744
BmuI	ACTGGG	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	628, 911
BsaWI	WCCGGW	2 cut(s)	208, 667
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	342, 405, 797
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	6 cut(s)	171, 544, 605, 952, 961, 991
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	4 cut(s)	353, 630, 851, 912
BseDI	CCNNGG	2 cut(s)	628, 911
BseGI	GGATG	5 cut(s)	394, 460, 745, 885, 997
BseLI	CCNNNNNNNGG	3 cut(s)	342, 405, 797
BseMII	CTCAG	2 cut(s)	48, 782
BseNI	ACTGG	6 cut(s)	171, 544, 605, 952, 961, 991
BseRI	GAGGAG	8 cut(s)	74, 241, 309, 312, 315, 318, 321, 756
BseSI	GKGCMC	1 cut(s)	889
BseX3I	CGGCCG	1 cut(s)	729
BseYI	CCCAGC	1 cut(s)	533
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	732
BshFI	GGCC	3 cut(s)	346, 637, 731
BshNI	GGYRCC	1 cut(s)	886
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	732
BsiSI	CCGG	4 cut(s)	209, 288, 315, 668
BslFI	GGGAC	3 cut(s)	61, 407, 550
BslI	CCNNNNNNNGG	3 cut(s)	342, 405, 797
BsmFI	GGGAC	3 cut(s)	61, 407, 550
BsmI	GAATGC	2 cut(s)	421, 522
BsnI	GGCC	3 cut(s)	346, 637, 731
Bsp1286I	GDGCHC	2 cut(s)	287, 889
Bsp143I	GATC	4 cut(s)	97, 122, 408, 571
BspANI	GGCC	3 cut(s)	346, 637, 731
BspCNI	CTCAG	2 cut(s)	49, 781
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	4 cut(s)	286, 347, 362, 888
BspMAI	CTGCAG	1 cut(s)	681
BspPI	GGATC	2 cut(s)	416, 566
BspT107I	GGYRCC	1 cut(s)	886
BspTI	CTTAAG	1 cut(s)	338
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	6 cut(s)	171, 544, 605, 952, 961, 991
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	628, 911
BssMI	GATC	4 cut(s)	97, 122, 408, 571
Bst2UI	CCWGG	4 cut(s)	353, 630, 851, 912
Bst4CI	ACNGT	1 cut(s)	899
BstAFI	CTTAAG	1 cut(s)	338
BstAPI	GCANNNNNTGC	2 cut(s)	725, 950
BstC8I	GCNNGC	5 cut(s)	186, 327, 331, 481, 598
BstDEI	CTNAG	2 cut(s)	57, 768
BstF5I	GGATG	5 cut(s)	394, 460, 745, 885, 997
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	2 cut(s)	314, 382
BstHHI	GCGC	3 cut(s)	190, 313, 381
BstKTI	GATC	4 cut(s)	100, 125, 411, 574
BstMBI	GATC	4 cut(s)	97, 122, 408, 571
BstMCI	CGRYCG	1 cut(s)	732
BstNI	CCWGG	4 cut(s)	353, 630, 851, 912
BstSCI	CCNGG	5 cut(s)	313, 351, 628, 849, 910
BstSFI	CTRYAG	1 cut(s)	677
BstSLI	GKGCMC	1 cut(s)	889
BstUI	CGCG	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	15
BstZI	CGGCCG	1 cut(s)	729
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	346, 637, 731
BtgZI	GCGATG	1 cut(s)	333
BtsCI	GGATG	5 cut(s)	394, 460, 745, 885, 997
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	2 cut(s)	579, 876
Cac8I	GCNNGC	5 cut(s)	186, 327, 331, 481, 598
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	3 cut(s)	190, 313, 381
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	345, 360, 636
Csp6I	GTAC	2 cut(s)	496, 900
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	715, 928
CviQI	GTAC	2 cut(s)	496, 900
DdeI	CTNAG	2 cut(s)	57, 768
DpnI	GATC	4 cut(s)	99, 124, 410, 573
DpnII	GATC	4 cut(s)	97, 122, 408, 571
EaeI	YGGCCR	1 cut(s)	729
EagI	CGGCCG	1 cut(s)	729
EciI	GGCGGA	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	360
Eco47III	AGCGCT	1 cut(s)	380
Eco52I	CGGCCG	1 cut(s)	729
Eco81I	CCTNAGG	1 cut(s)	57
EcoRII	CCWGG	4 cut(s)	351, 628, 849, 910
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	2 cut(s)	718, 931
FaiI	YATR	6 cut(s)	68, 434, 716, 876, 918, 929
FaqI	GGGAC	3 cut(s)	61, 407, 550
FatI	CATG	2 cut(s)	714, 927
FauI	CCCGC	2 cut(s)	338, 356
FokI	GGATG	4 cut(s)	401, 467, 732, 892
FriOI	GRGCYC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	465
GlaI	GCGC	3 cut(s)	189, 312, 380
GsaI	CCCAGC	1 cut(s)	537
HaeII	RGCGCY	2 cut(s)	314, 382
HaeIII	GGCC	3 cut(s)	346, 637, 731
HapII	CCGG	4 cut(s)	209, 288, 315, 668
HhaI	GCGC	3 cut(s)	190, 313, 381
Hin1II	CATG	2 cut(s)	718, 931
Hin6I	GCGC	3 cut(s)	188, 311, 379
HinP1I	GCGC	3 cut(s)	188, 311, 379
HincII	GTYRAC	1 cut(s)	462
HindII	GTYRAC	1 cut(s)	462
HinfI	GANTC	4 cut(s)	14, 269, 763, 932
HpaII	CCGG	4 cut(s)	209, 288, 315, 668
HphI	GGTGA	3 cut(s)	594, 677, 767
Hpy166II	GTNNAC	2 cut(s)	360, 462
Hpy188I	TCNGA	2 cut(s)	122, 646
Hpy188III	TCNNGA	4 cut(s)	30, 56, 95, 412
Hpy8I	GTNNAC	2 cut(s)	360, 462
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	627
HpyCH4III	ACNGT	1 cut(s)	899
HpyCH4V	TGCA	8 cut(s)	439, 490, 520, 679, 757, 874, 944, 953
HpyF3I	CTNAG	2 cut(s)	57, 768
Hsp92II	CATG	2 cut(s)	718, 931
HspAI	GCGC	3 cut(s)	188, 311, 379
Kzo9I	GATC	4 cut(s)	97, 122, 408, 571
LmnI	GCTCC	4 cut(s)	61, 290, 308, 375
LweI	GCATC	3 cut(s)	379, 691, 744
MaeI	CTAG	1 cut(s)	465
MaeIII	GTNAC	1 cut(s)	861
MalI	GATC	4 cut(s)	99, 124, 410, 573
MboI	GATC	4 cut(s)	97, 122, 408, 571
MboII	GAAGA	2 cut(s)	20, 50
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	287, 889
MluCI	AATT	4 cut(s)	19, 640, 833, 891
MlyI	GAGTC	2 cut(s)	8, 757
MmeI	TCCRAC	1 cut(s)	669
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	2 cut(s)	725, 905
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	4 cut(s)	209, 288, 315, 668
MspR9I	CCNGG	5 cut(s)	315, 353, 630, 851, 912
MunI	CAATTG	1 cut(s)	19
Mva1269I	GAATGC	2 cut(s)	421, 522
MvaI	CCWGG	4 cut(s)	353, 630, 851, 912
MvnI	CGCG	1 cut(s)	188
NciI	CCSGG	1 cut(s)	315
NdeII	GATC	4 cut(s)	97, 122, 408, 571
NlaIII	CATG	2 cut(s)	718, 931
NlaIV	GGNNCC	4 cut(s)	286, 347, 362, 888
NmuCI	GTSAC	1 cut(s)	861
PctI	GAATGC	2 cut(s)	421, 522
PfeI	GAWTC	2 cut(s)	269, 932
PinAI	ACCGGT	1 cut(s)	208
PleI	GAGTC	2 cut(s)	8, 757
PpsI	GAGTC	2 cut(s)	8, 757
Psp6I	CCWGG	4 cut(s)	351, 628, 849, 910
PspFI	CCCAGC	1 cut(s)	533
PspGI	CCWGG	4 cut(s)	351, 628, 849, 910
PspN4I	GGNNCC	4 cut(s)	286, 347, 362, 888
PspPI	GGNCC	3 cut(s)	345, 360, 636
PstI	CTGCAG	1 cut(s)	681
PstNI	CAGNNNCTG	1 cut(s)	725
PvuII	CAGCTG	2 cut(s)	725, 905
RsaI	GTAC	2 cut(s)	497, 901
RsaNI	GTAC	2 cut(s)	496, 900
SaqAI	TTAA	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	97, 122, 408, 571
Sau96I	GGNCC	3 cut(s)	345, 360, 636
SchI	GAGTC	2 cut(s)	8, 757
ScrFI	CCNGG	5 cut(s)	315, 353, 630, 851, 912
SduI	GDGCHC	2 cut(s)	287, 889
SfaNI	GCATC	3 cut(s)	379, 691, 744
SfcI	CTRYAG	1 cut(s)	677
SinI	GGWCC	1 cut(s)	360
SmlI	CTYRAG	2 cut(s)	28, 338
SmoI	CTYRAG	2 cut(s)	28, 338
Sse9I	AATT	4 cut(s)	19, 640, 833, 891
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	5 cut(s)	313, 351, 628, 849, 910
TaaI	ACNGT	1 cut(s)	899
TasI	AATT	4 cut(s)	19, 640, 833, 891
TatI	WGTACW	1 cut(s)	899
TauI	GCSGC	5 cut(s)	346, 549, 552, 555, 731
TfiI	GAWTC	2 cut(s)	269, 932
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	586, 876
TseFI	GTSAC	1 cut(s)	861
Tsp45I	GTSAC	1 cut(s)	861
TspDTI	ATGAA	1 cut(s)	834
TspRI	CASTG	2 cut(s)	586, 876
Vha464I	CTTAAG	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	360
XspI	CTAG	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.