Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Reverse (-)

46983403 .. 46985870

Gene Structure 2468 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG344300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGAGGGAAGACGACTCCAATTGGTTCTCAAGATGGGAAGAACAACTCCCATCTCCTGAGGAGCTTATGCCCTTGTCCCAAACCCTAATAAGTCCTGATCTTGCTCTGGCTTTTGACATCAGATCAAACCCCAATCCTACTCCCAATCCCATTACCAATACCAATACCACCAGTAGCCCACAGCACGCGCCCACACCTCCACCCCCACCGGTCAGTTCTTTGCCTCCTGCTACCCCGACCCACCCCAACTCCTCTGCTGATTTTGCCGATTCTGCTGACTTGGGCTCCGGCGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGCCCGGCGATGAGCCTGCCCGCACCCTTAAGCGGCCCCGCCTGGTGTGGACCCCACAGCTCCACAAGCGCTTTGTGGATGCCGTCGCCCACTTGGGGATCAAGAATGCCGTCCCCAAGACCATAATGCAGCTGATGAGTGTGGATGGGTTGACTAGGGAGAACGTTGCCAGCCATTTGCAGAAGTACCGCCTTTATCTCAAACGAATGCAGGGATTATCTGCTGGGACTGGTGGCGGCGGCGGCGGTGGAGGTTCCGCTGATCCTGCCACTGACCATTTATTTGCCAGCTCACCAGTTCCAGCTCATTTCTTACACCCAGGAAGGCCCAATTCCGACCATTTCCTGCCGTTTGTTCCGGTGGCTATGCAGCATCACCAGCAGCAGCAGCAGCACATGGCAGCAGCTGCGGCCGTAGCTGCCACCCATCCGCAGATGCAGCAGACTCCTCAGTATCACCATCACAGGCAGCCGCAGGTGGGGCATTTTGGCTCTCCACCAAATCCAAATGGGCAATTTGAACATCCATTCCTGGCGAGGCAGTCACAGGCAGTGCATAGGATGGGGGCACCAATTCACAGTCCAGCTGTGCCAGGGTATATTGAGGACATGGAATCAGCTAATGCAACTGGTGCAACTGGCAGGAAAGTTCTTACTCTTTTTCCTACTGGGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

332

Amino Acids

35.33

Weight (kDa)

6.56

Isoelectric Point (pI)

60.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	121 - 170	1.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	784
Acc36I	ACCTGC	1 cut(s)	784
AccB1I	GGYRCC	1 cut(s)	886
AccII	CGCG	1 cut(s)	188
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	2 cut(s)	425, 575
AcoI	YGGCCR	1 cut(s)	729
AfaI	GTAC	1 cut(s)	506
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	351, 414, 797
AflII	CTTAAG	1 cut(s)	347
AgeI	ACCGGT	1 cut(s)	208
AgsI	TTSAA	1 cut(s)	839
AjnI	CCWGG	4 cut(s)	360, 637, 849, 910
AloI	GAACNNNNNNTCC	2 cut(s)	831, 863
AluBI	AGCT	9 cut(s)	64, 379, 451, 609, 623, 725, 737, 905, 938
AluI	AGCT	9 cut(s)	64, 379, 451, 609, 623, 725, 737, 905, 938
AlwI	GGATC	2 cut(s)	425, 575
AlwNI	CAGNNNCTG	1 cut(s)	725
Aor51HI	AGCGCT	1 cut(s)	389
AoxI	GGCC	3 cut(s)	353, 644, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	584, 616
AsiGI	ACCGGT	1 cut(s)	208
AspLEI	GCGC	3 cut(s)	190, 322, 390
AspS9I	GGNCC	3 cut(s)	354, 369, 645
AsuC2I	CCSGG	1 cut(s)	324
AsuHPI	GGTGA	3 cut(s)	603, 686, 767
AvaII	GGWCC	1 cut(s)	369
AxyI	CCTNAGG	1 cut(s)	57
BaeGI	GKGCMC	1 cut(s)	889
BanI	GGYRCC	1 cut(s)	886
BanII	GRGCYC	1 cut(s)	287
BbsI	GAAGAC	1 cut(s)	15
BccI	CCATC	6 cut(s)	27, 58, 458, 753, 786, 874
BceAI	ACGGC	4 cut(s)	386, 413, 652, 716
BcgI	CGANNNNNNTGC	2 cut(s)	317, 351
BciT130I	CCWGG	4 cut(s)	362, 639, 851, 912
BcnI	CCSGG	1 cut(s)	324
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	2 cut(s)	323, 391
BfrI	CTTAAG	1 cut(s)	347
BfuAI	ACCTGC	1 cut(s)	784
Bme1390I	CCNGG	5 cut(s)	324, 362, 639, 851, 912
Bme18I	GGWCC	1 cut(s)	369
BmgT120I	GGNCC	3 cut(s)	354, 369, 645
BmiI	GGNNCC	5 cut(s)	286, 356, 371, 574, 888
BmrFI	CCNGG	5 cut(s)	324, 362, 639, 851, 912
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	3 cut(s)	388, 700, 744
BmuI	ACTGGG	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	13
BpuMI	CCSGG	1 cut(s)	324
BsaJI	CCNNGG	2 cut(s)	637, 911
BsaWI	WCCGGW	2 cut(s)	208, 676
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 269, 299
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 414, 797
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	6 cut(s)	171, 553, 614, 952, 961, 991
Bse21I	CCTNAGG	1 cut(s)	57
BseBI	CCWGG	4 cut(s)	362, 639, 851, 912
BseDI	CCNNGG	2 cut(s)	637, 911
BseGI	GGATG	6 cut(s)	403, 469, 745, 841, 885, 997
BseLI	CCNNNNNNNGG	3 cut(s)	351, 414, 797
BseMII	CTCAG	2 cut(s)	48, 782
BseNI	ACTGG	6 cut(s)	171, 553, 614, 952, 961, 991
BseSI	GKGCMC	1 cut(s)	889
BseX3I	CGGCCG	1 cut(s)	729
BseYI	CCCAGC	1 cut(s)	542
Bsh1236I	CGCG	1 cut(s)	188
Bsh1285I	CGRYCG	1 cut(s)	732
BshFI	GGCC	3 cut(s)	355, 646, 731
BshNI	GGYRCC	1 cut(s)	886
BshTI	ACCGGT	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	732
BsiSI	CCGG	4 cut(s)	209, 288, 324, 677
BslFI	GGGAC	3 cut(s)	61, 416, 559
BslI	CCNNNNNNNGG	3 cut(s)	351, 414, 797
BsmFI	GGGAC	3 cut(s)	61, 416, 559
BsmI	GAATGC	2 cut(s)	430, 531
BsnI	GGCC	3 cut(s)	355, 646, 731
Bsp1286I	GDGCHC	2 cut(s)	287, 889
Bsp143I	GATC	4 cut(s)	97, 122, 417, 580
BspANI	GGCC	3 cut(s)	355, 646, 731
BspCNI	CTCAG	2 cut(s)	49, 781
BspFNI	CGCG	1 cut(s)	188
BspLI	GGNNCC	5 cut(s)	286, 356, 371, 574, 888
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	2 cut(s)	425, 575
BspT107I	GGYRCC	1 cut(s)	886
BspTI	CTTAAG	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	6 cut(s)	171, 553, 614, 952, 961, 991
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	637, 911
BssMI	GATC	4 cut(s)	97, 122, 417, 580
Bst2UI	CCWGG	4 cut(s)	362, 639, 851, 912
Bst4CI	ACNGT	1 cut(s)	899
BstAFI	CTTAAG	1 cut(s)	347
BstAPI	GCANNNNNTGC	2 cut(s)	725, 950
BstC8I	GCNNGC	5 cut(s)	186, 336, 340, 490, 607
BstDEI	CTNAG	2 cut(s)	57, 768
BstF5I	GGATG	6 cut(s)	403, 469, 745, 841, 885, 997
BstFNI	CGCG	1 cut(s)	188
BstH2I	RGCGCY	2 cut(s)	323, 391
BstHHI	GCGC	3 cut(s)	190, 322, 390
BstKTI	GATC	4 cut(s)	100, 125, 420, 583
BstMBI	GATC	4 cut(s)	97, 122, 417, 580
BstMCI	CGRYCG	1 cut(s)	732
BstNI	CCWGG	4 cut(s)	362, 639, 851, 912
BstSCI	CCNGG	5 cut(s)	322, 360, 637, 849, 910
BstSLI	GKGCMC	1 cut(s)	889
BstUI	CGCG	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	15
BstZI	CGGCCG	1 cut(s)	729
Bsu36I	CCTNAGG	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	355, 646, 731
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	6 cut(s)	403, 469, 745, 841, 885, 997
BtsI	GCAGTG	1 cut(s)	876
BtsIMutI	CAGTG	2 cut(s)	588, 876
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	5 cut(s)	186, 336, 340, 490, 607
CaiI	CAGNNNCTG	1 cut(s)	725
CfoI	GCGC	3 cut(s)	190, 322, 390
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	354, 369, 645
Csp6I	GTAC	1 cut(s)	505
CspAI	ACCGGT	1 cut(s)	208
CviAII	CATG	2 cut(s)	715, 928
CviQI	GTAC	1 cut(s)	505
DdeI	CTNAG	2 cut(s)	57, 768
DpnI	GATC	4 cut(s)	99, 124, 419, 582
DpnII	GATC	4 cut(s)	97, 122, 417, 580
EaeI	YGGCCR	1 cut(s)	729
EagI	CGGCCG	1 cut(s)	729
EciI	GGCGGA	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	369
Eco47III	AGCGCT	1 cut(s)	389
Eco52I	CGGCCG	1 cut(s)	729
Eco81I	CCTNAGG	1 cut(s)	57
EcoRII	CCWGG	4 cut(s)	360, 637, 849, 910
EcoT38I	GRGCYC	1 cut(s)	287
FaeI	CATG	2 cut(s)	718, 931
FaiI	YATR	7 cut(s)	68, 443, 686, 716, 876, 918, 929
FaqI	GGGAC	3 cut(s)	61, 416, 559
FatI	CATG	2 cut(s)	714, 927
FauI	CCCGC	2 cut(s)	347, 365
FokI	GGATG	5 cut(s)	410, 476, 732, 828, 892
FriOI	GRGCYC	1 cut(s)	287
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	3 cut(s)	189, 321, 389
GsaI	CCCAGC	1 cut(s)	546
HaeII	RGCGCY	2 cut(s)	323, 391
HaeIII	GGCC	3 cut(s)	355, 646, 731
HapII	CCGG	4 cut(s)	209, 288, 324, 677
HhaI	GCGC	3 cut(s)	190, 322, 390
Hin1II	CATG	2 cut(s)	718, 931
Hin6I	GCGC	3 cut(s)	188, 320, 388
HinP1I	GCGC	3 cut(s)	188, 320, 388
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	4 cut(s)	14, 269, 763, 932
HpaII	CCGG	4 cut(s)	209, 288, 324, 677
HphI	GGTGA	3 cut(s)	603, 686, 767
Hpy166II	GTNNAC	2 cut(s)	369, 471
Hpy188I	TCNGA	2 cut(s)	122, 655
Hpy188III	TCNNGA	4 cut(s)	30, 56, 95, 421
Hpy8I	GTNNAC	2 cut(s)	369, 471
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	1 cut(s)	636
HpyCH4III	ACNGT	1 cut(s)	899
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	8 cut(s)	448, 499, 529, 688, 757, 874, 944, 953
HpyF3I	CTNAG	2 cut(s)	57, 768
HpySE526I	ACGT	1 cut(s)	483
Hsp92II	CATG	2 cut(s)	718, 931
HspAI	GCGC	3 cut(s)	188, 320, 388
Kzo9I	GATC	4 cut(s)	97, 122, 417, 580
LmnI	GCTCC	4 cut(s)	61, 290, 317, 384
LweI	GCATC	3 cut(s)	388, 700, 744
MaeI	CTAG	1 cut(s)	474
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	1 cut(s)	861
MalI	GATC	4 cut(s)	99, 124, 419, 582
MboI	GATC	4 cut(s)	97, 122, 417, 580
MboII	GAAGA	2 cut(s)	20, 50
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	287, 889
MluCI	AATT	4 cut(s)	19, 649, 833, 891
MlyI	GAGTC	2 cut(s)	8, 757
MmeI	TCCRAC	1 cut(s)	678
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	4 cut(s)	451, 578, 725, 905
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	4 cut(s)	209, 288, 324, 677
MspR9I	CCNGG	5 cut(s)	324, 362, 639, 851, 912
MunI	CAATTG	1 cut(s)	19
Mva1269I	GAATGC	2 cut(s)	430, 531
MvaI	CCWGG	4 cut(s)	362, 639, 851, 912
MvnI	CGCG	1 cut(s)	188
NciI	CCSGG	1 cut(s)	324
NdeII	GATC	4 cut(s)	97, 122, 417, 580
NlaIII	CATG	2 cut(s)	718, 931
NlaIV	GGNNCC	5 cut(s)	286, 356, 371, 574, 888
NmuCI	GTSAC	1 cut(s)	861
PaqCI	CACCTGC	1 cut(s)	784
PctI	GAATGC	2 cut(s)	430, 531
PfeI	GAWTC	2 cut(s)	269, 932
PinAI	ACCGGT	1 cut(s)	208
PleI	GAGTC	2 cut(s)	8, 757
PpsI	GAGTC	2 cut(s)	8, 757
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	4 cut(s)	360, 637, 849, 910
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	4 cut(s)	360, 637, 849, 910
PspN4I	GGNNCC	5 cut(s)	286, 356, 371, 574, 888
PspPI	GGNCC	3 cut(s)	354, 369, 645
PstNI	CAGNNNCTG	1 cut(s)	725
PvuII	CAGCTG	3 cut(s)	451, 725, 905
RsaI	GTAC	1 cut(s)	506
RsaNI	GTAC	1 cut(s)	505
SaqAI	TTAA	1 cut(s)	348
Sau3AI	GATC	4 cut(s)	97, 122, 417, 580
Sau96I	GGNCC	3 cut(s)	354, 369, 645
SchI	GAGTC	2 cut(s)	8, 757
ScrFI	CCNGG	5 cut(s)	324, 362, 639, 851, 912
SduI	GDGCHC	2 cut(s)	287, 889
SfaNI	GCATC	3 cut(s)	388, 700, 744
SinI	GGWCC	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	28, 347
SmoI	CTYRAG	2 cut(s)	28, 347
Sse9I	AATT	4 cut(s)	19, 649, 833, 891
SspMI	CTAG	1 cut(s)	474
StyD4I	CCNGG	5 cut(s)	322, 360, 637, 849, 910
TaaI	ACNGT	1 cut(s)	899
TaiI	ACGT	1 cut(s)	486
TasI	AATT	4 cut(s)	19, 649, 833, 891
TauI	GCSGC	6 cut(s)	355, 558, 561, 564, 731, 793
TfiI	GAWTC	2 cut(s)	269, 932
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TscAI	CASTG	2 cut(s)	595, 876
TseFI	GTSAC	1 cut(s)	861
Tsp45I	GTSAC	1 cut(s)	861
TspRI	CASTG	2 cut(s)	595, 876
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	369
XspI	CTAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.