Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Forward (+)

8756485 .. 8757435

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGGGAAGATGATGAGTCCAATTGGTTCTCCAGATGGGAGGAAGAGCTGCCTACTCCCGACGAACTCATGCCCTTATCCCAAACCCTAATCACTCCTGATCTTGCCCTCGCCTTTGACATTTCCCACCAGCACCCCCCTCCTCCCCATTCCCAATCTCAACCCCAACCTCAACCCCCCCACACACCCCCTCCCCCTCCTCCTCCTCCCAATTCCCTCCCTCCCGCTACCCCCACCCACCCCAACTCCTCCGCCGACTTCGCCGATTCCGCTGACTTGGGCTCCGGTGCCGCCGGCGATGAGCCCGCCCGCACCCTCAAGCGCCCCCGCCTCGTCTGGACCCCCCAGCTCCACAAGCGCTTCGTCGACGCTGTCGCCCACCTCGGTATCAAGAACGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGACGGCCTCACCCGCGAGAATGTTGCCAGCCATCTGCAGAAGTACCGTCTTTATCTCAAGCGGATGCAGGGCTTGTCTGGAGGTTCTGCCGGGGCTGCCGGCGCGGGTGCTGCTGGCTTGGCCGCCTCTGCCGATCCCGCCACTGACCATTTGTTCGCCAGCTCCCCAGTTCCGGCTCATCTCCTGCACCCGCACCCAGGGGGCCGGCCCAATTCCGAGCATTTCTTGCCGTTTGTGCCGGTGGCTCTGCAGCAGCACCACCATCACCAGCAGCAGCAGCAGCAGATTGCAGCGGCAGTGGCAGCCCATCCGCATTATCACAGGCAGGTGGGGCATTTTGGGTCGCCACCAAATGGGCAATTCGAGCACCCATTCTTGGCGAGGCAGTCGTCACAGCCGGTTCATAGGATGGGGGCACCGCTGCACAATTCAGTGCCAGCCTATGTAGAGGACTTGGAATCAGCGAATGCAACTGAAGGCAGGAAAGTTCTTACTCTATTTCCAACTGGGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

317

Amino Acids

34.19

Weight (kDa)

6.29

Isoelectric Point (pI)

59.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	111 - 160	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	748
Acc36I	ACCTGC	1 cut(s)	748
AccB1I	GGYRCC	2 cut(s)	287, 847
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccI	GTMKAC	2 cut(s)	366, 432
AccII	CGCG	2 cut(s)	447, 536
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	552
AcuI	CTGAAG	1 cut(s)	927
AfaI	GTAC	1 cut(s)	476
AfeI	AGCGCT	1 cut(s)	359
AfiI	CCNNNNNNNGG	4 cut(s)	604, 629, 785, 808
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	4 cut(s)	49, 349, 421, 594
AluI	AGCT	4 cut(s)	49, 349, 421, 594
Alw21I	GWGCWC	1 cut(s)	801
AlwI	GGATC	1 cut(s)	560
Aor51HI	AGCGCT	1 cut(s)	359
AoxI	GGCC	4 cut(s)	436, 552, 634, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AspLEI	GCGC	3 cut(s)	324, 360, 536
AspS9I	GGNCC	3 cut(s)	339, 634, 639
AsuC2I	CCSGG	1 cut(s)	523
AsuHPI	GGTGA	2 cut(s)	433, 689
AvaII	GGWCC	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	850
BaeI	ACNNNNGTAYC	2 cut(s)	370, 403
BanI	GGYRCC	2 cut(s)	287, 847
BanII	GRGCYC	2 cut(s)	284, 306
Bbv12I	GWGCWC	1 cut(s)	801
BccI	CCATC	5 cut(s)	30, 471, 702, 747, 835
BceAI	ACGGC	3 cut(s)	383, 451, 646
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	523
BfmI	CTRYAG	2 cut(s)	467, 680
BfoI	RGCGCY	2 cut(s)	325, 361
BfuAI	ACCTGC	1 cut(s)	748
Bme1390I	CCNGG	2 cut(s)	523, 630
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	3 cut(s)	339, 634, 639
BmiI	GGNNCC	5 cut(s)	283, 289, 341, 635, 849
BmrFI	CCNGG	2 cut(s)	523, 630
BmrI	ACTGGG	2 cut(s)	593, 948
BmsI	GCATC	1 cut(s)	486
BmuI	ACTGGG	2 cut(s)	593, 948
BpmI	CTGGAG	2 cut(s)	16, 531
BpuEI	CTTGAG	2 cut(s)	302, 473
BpuMI	CCSGG	1 cut(s)	523
BsaJI	CCNNGG	4 cut(s)	382, 522, 628, 629
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	6 cut(s)	175, 205, 230, 260, 266, 296
Bsc4I	CCNNNNNNNGG	4 cut(s)	604, 629, 785, 808
Bse118I	RCCGGY	5 cut(s)	293, 530, 636, 670, 829
Bse1I	ACTGG	2 cut(s)	599, 943
BseBI	CCWGG	1 cut(s)	630
BseDI	CCNNGG	4 cut(s)	382, 522, 628, 629
BseGI	GGATG	4 cut(s)	501, 739, 846, 949
BseLI	CCNNNNNNNGG	4 cut(s)	604, 629, 785, 808
BseNI	ACTGG	2 cut(s)	599, 943
BseRI	GAGGAG	5 cut(s)	132, 189, 192, 195, 238
BseSI	GKGCMC	1 cut(s)	850
BseYI	CCCAGC	1 cut(s)	345
BsgI	GTGCAG	2 cut(s)	602, 839
Bsh1236I	CGCG	2 cut(s)	447, 536
BshFI	GGCC	4 cut(s)	438, 554, 636, 640
BshNI	GGYRCC	2 cut(s)	287, 847
BsiHKAI	GWGCWC	1 cut(s)	801
BsiSI	CCGG	8 cut(s)	285, 294, 522, 531, 605, 637, 671, 830
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	4 cut(s)	604, 629, 785, 808
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	4 cut(s)	438, 554, 636, 640
Bsp1286I	GDGCHC	4 cut(s)	284, 306, 801, 850
Bsp143I	GATC	2 cut(s)	100, 565
BspANI	GGCC	4 cut(s)	438, 554, 636, 640
BspFNI	CGCG	2 cut(s)	447, 536
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	5 cut(s)	283, 289, 341, 635, 849
BspMAI	CTGCAG	2 cut(s)	471, 684
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	2 cut(s)	287, 847
BsrFI	RCCGGY	5 cut(s)	293, 530, 636, 670, 829
BsrI	ACTGG	2 cut(s)	599, 943
BssAI	RCCGGY	5 cut(s)	293, 530, 636, 670, 829
BssECI	CCNNGG	4 cut(s)	382, 522, 628, 629
BssMI	GATC	2 cut(s)	100, 565
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstC8I	GCNNGC	9 cut(s)	295, 306, 310, 460, 532, 547, 592, 638, 870
BstF5I	GGATG	4 cut(s)	501, 739, 846, 949
BstFNI	CGCG	2 cut(s)	447, 536
BstH2I	RGCGCY	2 cut(s)	325, 361
BstHHI	GCGC	3 cut(s)	324, 360, 536
BstKTI	GATC	2 cut(s)	103, 568
BstMBI	GATC	2 cut(s)	100, 565
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	2 cut(s)	521, 628
BstSFI	CTRYAG	2 cut(s)	467, 680
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	2 cut(s)	447, 536
BsuRI	GGCC	4 cut(s)	438, 554, 636, 640
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	4 cut(s)	501, 739, 846, 949
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	3 cut(s)	573, 735, 870
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	9 cut(s)	295, 306, 310, 460, 532, 547, 592, 638, 870
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	3 cut(s)	324, 360, 536
Cfr10I	RCCGGY	5 cut(s)	293, 530, 636, 670, 829
Cfr13I	GGNCC	3 cut(s)	339, 634, 639
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	70, 424
CviQI	GTAC	1 cut(s)	475
DpnI	GATC	2 cut(s)	102, 567
DpnII	GATC	2 cut(s)	100, 565
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	284, 306
Eco47I	GGWCC	1 cut(s)	339
Eco47III	AGCGCT	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	927
EcoRII	CCWGG	1 cut(s)	628
EcoT38I	GRGCYC	2 cut(s)	284, 306
FaeI	CATG	2 cut(s)	73, 427
FaiI	YATR	5 cut(s)	71, 413, 425, 837, 876
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	2 cut(s)	69, 423
FauI	CCCGC	8 cut(s)	232, 313, 317, 335, 452, 529, 577, 630
FblI	GTMKAC	2 cut(s)	366, 432
FokI	GGATG	3 cut(s)	508, 726, 853
FriOI	GRGCYC	2 cut(s)	284, 306
FseI	GGCCGGCC	1 cut(s)	640
GlaI	GCGC	3 cut(s)	323, 359, 535
GsaI	CCCAGC	1 cut(s)	349
GsuI	CTGGAG	2 cut(s)	16, 531
HaeII	RGCGCY	2 cut(s)	325, 361
HaeIII	GGCC	4 cut(s)	438, 554, 636, 640
HapII	CCGG	8 cut(s)	285, 294, 522, 531, 605, 637, 671, 830
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	3 cut(s)	324, 360, 536
Hin1II	CATG	2 cut(s)	73, 427
Hin6I	GCGC	3 cut(s)	322, 358, 534
HinP1I	GCGC	3 cut(s)	322, 358, 534
HincII	GTYRAC	2 cut(s)	367, 433
HindII	GTYRAC	2 cut(s)	367, 433
HinfI	GANTC	3 cut(s)	17, 266, 890
HpaII	CCGG	8 cut(s)	285, 294, 522, 531, 605, 637, 671, 830
HphI	GGTGA	2 cut(s)	433, 689
Hpy166II	GTNNAC	2 cut(s)	367, 433
Hpy188I	TCNGA	1 cut(s)	649
Hpy188III	TCNNGA	7 cut(s)	33, 59, 98, 337, 391, 424, 510
Hpy8I	GTNNAC	2 cut(s)	367, 433
Hpy99I	CGWCG	4 cut(s)	65, 368, 371, 437
HpyAV	CCTTC	1 cut(s)	902
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	8 cut(s)	418, 469, 499, 619, 682, 722, 856, 902
Hsp92II	CATG	2 cut(s)	73, 427
HspAI	GCGC	3 cut(s)	322, 358, 534
KroI	GCCGGC	3 cut(s)	293, 530, 636
KroNI	GCCGGC	3 cut(s)	295, 532, 638
Kzo9I	GATC	2 cut(s)	100, 565
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	287, 354, 599
LweI	GCATC	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	822
MalI	GATC	2 cut(s)	102, 567
MboI	GATC	2 cut(s)	100, 565
MboII	GAAGA	2 cut(s)	20, 56
MfeI	CAATTG	1 cut(s)	22
MhlI	GDGCHC	4 cut(s)	284, 306, 801, 850
MluCI	AATT	5 cut(s)	22, 211, 643, 791, 859
MlyI	GAGTC	1 cut(s)	26
MreI	CGCCGGCG	1 cut(s)	293
MroNI	GCCGGC	3 cut(s)	293, 530, 636
MspA1I	CMGCKG	3 cut(s)	272, 725, 853
MspI	CCGG	8 cut(s)	285, 294, 522, 531, 605, 637, 671, 830
MspR9I	CCNGG	2 cut(s)	523, 630
MunI	CAATTG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	2 cut(s)	447, 536
NaeI	GCCGGC	3 cut(s)	295, 532, 638
NciI	CCSGG	1 cut(s)	523
NdeII	GATC	2 cut(s)	100, 565
NgoMIV	GCCGGC	3 cut(s)	293, 530, 636
NlaIII	CATG	2 cut(s)	73, 427
NlaIV	GGNNCC	5 cut(s)	283, 289, 341, 635, 849
NmuCI	GTSAC	1 cut(s)	822
PagI	TCATGA	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	748
PasI	CCCWGGG	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	39
PctI	GAATGC	1 cut(s)	904
PdiI	GCCGGC	3 cut(s)	295, 532, 638
PfeI	GAWTC	2 cut(s)	266, 890
PflFI	GACNNNGTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	785
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp6I	CCWGG	1 cut(s)	628
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	5 cut(s)	283, 289, 341, 635, 849
PspPI	GGNCC	3 cut(s)	339, 634, 639
PstI	CTGCAG	2 cut(s)	471, 684
PsyI	GACNNNGTC	1 cut(s)	371
RigI	GGCCGGCC	1 cut(s)	640
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SalI	GTCGAC	2 cut(s)	365, 431
SapI	GCTCTTC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	100, 565
Sau96I	GGNCC	3 cut(s)	339, 634, 639
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	523, 630
SduI	GDGCHC	4 cut(s)	284, 306, 801, 850
SetI	ASST	8 cut(s)	51, 172, 351, 384, 423, 517, 596, 762
SfaNI	GCATC	1 cut(s)	486
SfcI	CTRYAG	2 cut(s)	467, 680
SgrAI	CRCCGGYG	1 cut(s)	293
SgrDI	CGTCGACG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	317, 488
SmoI	CTYRAG	2 cut(s)	317, 488
Sse9I	AATT	5 cut(s)	22, 211, 643, 791, 859
StyD4I	CCNGG	2 cut(s)	521, 628
TaaI	ACNGT	1 cut(s)	479
TaqI	TCGA	3 cut(s)	366, 432, 795
TasI	AATT	5 cut(s)	22, 211, 643, 791, 859
TauI	GCSGC	3 cut(s)	293, 557, 728
TfiI	GAWTC	2 cut(s)	266, 890
TscAI	CASTG	3 cut(s)	580, 735, 870
TseFI	GTSAC	1 cut(s)	822
Tsp45I	GTSAC	1 cut(s)	822
TspDTI	ATGAA	1 cut(s)	824
TspRI	CASTG	3 cut(s)	580, 735, 870
Tth111I	GACNNNGTC	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	339
XmiI	GTMKAC	2 cut(s)	366, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.