Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Forward (+)

3369479 .. 3371575

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G10760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGAGAGAAGACGATTCAGACTGGTTCGCAAGATGGGAAGAAGAACTTCCATCACCAGAAGAGCTCATGCCAATATCACAATCTCTAATCTCACCCGATCTAGCTCTAGCCTTCGATATACGAACCCCAAATCACGGAAACGGAAACTCAAACCAACCTCATCATCATCATCATCACCAAACCACACCTCCTACACCGTCTCAGCTTCAGCTTCCATCTTCTCAAGCCAATTCCTCAGCCGAATTCGCTGCAGATTCAGCAGATCTAGGCTCCGGAGGAGCTGCCGGAGACGAACCAGCTCGGACTTTAAAACGACCTCGTCTTGTCTGGACACCGCAGCTGCATAAACGTTTCGTTGATGCTGTTGCGCATTTAGGGATTAAGAACGCAGTTCCTAAAACGATTATGCAGCTTATGAGTGTTGATGGTTTAACTAGAGAAAACGTTGCGAGTCATTTGCAAAAGTATAGACTTTATCTTAAGAGAATGCAAGGTTTGTCTTCTGGTGGTGGTGCTGGTTCAGATCCAGCTACTGATCGTCTTTTCGCTAGCTCTCCTGTTCCTGCTCACTTTCTTCATCCTAATCGTGTTCCCAGTTCTGATCATTTCATGCCGTCTTTTGTTCCTATTGCTACTCTTCAACAACAACAACAAATGGCTGCTGCTGCGGCCGCTGCTGCAGCAGCTAATCCTCATTTACAACCGCCTCAGTTCCACCGTCAAATCGCAGCTGCGCATTTTGGTTCACCGACTAATGGTGGATTCAGTTCACCGACGAGTAATGGACAGTTTGGATCACCGACTAGTAATGGATTTGGATCACCGACGACTAATGGGAAGTTTGATCCTTCGTTCTTGGCGGTGAGGCAAACGCAGCAGCAACCAATTCAGAGAATGTCTACACCATCATTGCATAGTCCAGTTAGTAATTACGTTGAGGATTTGGAATCTGCAAACGCTAATGGAGGGAGAACTGTCTTAACTTTATTCCCAACTCGAGACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

335

Amino Acids

36.11

Weight (kDa)

6.48

Isoelectric Point (pI)

58.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	108 - 157	1.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	369, 735
AccI	GTMKAC	1 cut(s)	899
AccIII	TCCGGA	1 cut(s)	272
AciI	CCGC	5 cut(s)	335, 668, 672, 704, 860
AclI	AACGTT	2 cut(s)	349, 444
AclWI	GGATC	4 cut(s)	518, 802, 826, 839
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	191
AfiI	CCNNNNNNNGG	2 cut(s)	134, 755
AflII	CTTAAG	1 cut(s)	479
AgsI	TTSAA	1 cut(s)	641
AhlI	ACTAGT	1 cut(s)	803
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	3 cut(s)	204, 282, 993
AlwI	GGATC	4 cut(s)	518, 802, 826, 839
AlwNI	CAGNNNCTG	1 cut(s)	533
Ama87I	CYCGRG	1 cut(s)	996
Aor13HI	TCCGGA	1 cut(s)	272
AoxI	GGCC	1 cut(s)	669
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	370, 736
AsuHPI	GGTGA	8 cut(s)	45, 84, 167, 738, 762, 789, 813, 874
AsuNHI	GCTAGC	1 cut(s)	548
AvaI	CYCGRG	1 cut(s)	996
BanII	GRGCYC	1 cut(s)	66
BbsI	GAAGAC	2 cut(s)	15, 492
Bbv12I	GWGCWC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	235
BccI	CCATC	5 cut(s)	27, 58, 223, 419, 913
BceAI	ACGGC	1 cut(s)	598
BcgI	CGANNNNNNTGC	4 cut(s)	230, 264, 439, 473
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	3 cut(s)	204, 282, 993
BcuI	ACTAGT	1 cut(s)	803
BfaI	CTAG	6 cut(s)	101, 107, 266, 435, 549, 804
BfmI	CTRYAG	2 cut(s)	249, 678
BfrI	CTTAAG	1 cut(s)	479
BglII	AGATCT	1 cut(s)	262
BmeT110I	CYCGRG	1 cut(s)	996
BmiI	GGNNCC	1 cut(s)	271
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	1 cut(s)	349
BmtI	GCTAGC	1 cut(s)	552
BmuI	ACTGGG	1 cut(s)	588
BpiI	GAAGAC	2 cut(s)	15, 492
Bpu10I	CCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	207
BsaBI	GATNNNNATC	1 cut(s)	817
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 755
Bse1I	ACTGG	3 cut(s)	26, 594, 920
Bse3DI	GCAATG	1 cut(s)	908
Bse8I	GATNNNNATC	1 cut(s)	817
BseAI	TCCGGA	1 cut(s)	272
BseGI	GGATG	1 cut(s)	577
BseJI	GATNNNNATC	1 cut(s)	817
BseLI	CCNNNNNNNGG	2 cut(s)	134, 755
BseMI	GCAATG	1 cut(s)	908
BseMII	CTCAG	3 cut(s)	215, 249, 722
BseNI	ACTGG	3 cut(s)	26, 594, 920
BseRI	GAGGAG	1 cut(s)	291
BseX3I	CGGCCG	1 cut(s)	669
Bsh1285I	CGRYCG	1 cut(s)	672
BshFI	GGCC	1 cut(s)	671
BsiEI	CGRYCG	1 cut(s)	672
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	1 cut(s)	996
BsiSI	CCGG	2 cut(s)	273, 285
BslI	CCNNNNNNNGG	2 cut(s)	134, 755
BsmAI	GTCTC	3 cut(s)	204, 282, 993
BsmBI	CGTCTC	3 cut(s)	204, 282, 993
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	671
BsoBI	CYCGRG	1 cut(s)	996
Bsp1286I	GDGCHC	1 cut(s)	66
Bsp13I	TCCGGA	1 cut(s)	272
Bsp143I	GATC	8 cut(s)	97, 262, 523, 535, 601, 794, 818, 844
BspACI	CCGC	5 cut(s)	335, 668, 672, 704, 860
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	3 cut(s)	214, 248, 721
BspEI	TCCGGA	1 cut(s)	272
BspLI	GGNNCC	1 cut(s)	271
BspMAI	CTGCAG	2 cut(s)	253, 682
BspOI	GCTAGC	1 cut(s)	552
BspPI	GGATC	4 cut(s)	518, 802, 826, 839
BspQI	GCTCTTC	1 cut(s)	54
BspTI	CTTAAG	1 cut(s)	479
BsrDI	GCAATG	1 cut(s)	908
BsrI	ACTGG	3 cut(s)	26, 594, 920
BssMI	GATC	8 cut(s)	97, 262, 523, 535, 601, 794, 818, 844
Bst4CI	ACNGT	4 cut(s)	198, 719, 789, 976
Bst6I	CTCTTC	2 cut(s)	54, 642
BstAFI	CTTAAG	1 cut(s)	479
BstC8I	GCNNGC	1 cut(s)	550
BstDEI	CTNAG	3 cut(s)	201, 235, 708
BstF5I	GGATG	1 cut(s)	577
BstHHI	GCGC	2 cut(s)	370, 736
BstKTI	GATC	8 cut(s)	100, 265, 526, 538, 604, 797, 821, 847
BstMAI	GTCTC	3 cut(s)	204, 282, 993
BstMBI	GATC	8 cut(s)	97, 262, 523, 535, 601, 794, 818, 844
BstMCI	CGRYCG	1 cut(s)	672
BstSFI	CTRYAG	2 cut(s)	249, 678
BstV2I	GAAGAC	2 cut(s)	15, 492
BstX2I	RGATCY	2 cut(s)	262, 523
BstYI	RGATCY	2 cut(s)	262, 523
BstZI	CGGCCG	1 cut(s)	669
BsuRI	GGCC	1 cut(s)	671
BtsCI	GGATG	1 cut(s)	577
Cac8I	GCNNGC	1 cut(s)	550
CaiI	CAGNNNCTG	1 cut(s)	533
CciNI	GCGGCCGC	1 cut(s)	669
CfoI	GCGC	2 cut(s)	370, 736
CviAII	CATG	2 cut(s)	67, 610
DdeI	CTNAG	3 cut(s)	201, 235, 708
DpnI	GATC	8 cut(s)	99, 264, 525, 537, 603, 796, 820, 846
DpnII	GATC	8 cut(s)	97, 262, 523, 535, 601, 794, 818, 844
DraI	TTTAAA	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	669
EagI	CGGCCG	1 cut(s)	669
Eam1104I	CTCTTC	2 cut(s)	54, 642
EarI	CTCTTC	2 cut(s)	54, 642
Ecl136II	GAGCTC	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	669
Eco24I	GRGCYC	1 cut(s)	66
Eco52I	CGGCCG	1 cut(s)	669
Eco53kI	GAGCTC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	191
Eco88I	CYCGRG	1 cut(s)	996
EcoICRI	GAGCTC	1 cut(s)	64
EcoRI	GAATTC	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	66
Esp3I	CGTCTC	3 cut(s)	204, 282, 993
FaeI	CATG	2 cut(s)	70, 613
FaiI	YATR	8 cut(s)	68, 119, 345, 407, 416, 468, 611, 915
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	2 cut(s)	66, 609
FbaI	TGATCA	1 cut(s)	601
FblI	GTMKAC	1 cut(s)	899
FokI	GGATG	1 cut(s)	564
FriOI	GRGCYC	1 cut(s)	66
FspBI	CTAG	6 cut(s)	101, 107, 266, 435, 549, 804
FspI	TGCGCA	2 cut(s)	369, 735
GlaI	GCGC	2 cut(s)	369, 735
HaeIII	GGCC	1 cut(s)	671
HapII	CCGG	2 cut(s)	273, 285
HhaI	GCGC	2 cut(s)	370, 736
Hin1II	CATG	2 cut(s)	70, 613
Hin6I	GCGC	2 cut(s)	368, 734
HinP1I	GCGC	2 cut(s)	368, 734
HinfI	GANTC	5 cut(s)	14, 254, 451, 762, 947
HpaII	CCGG	2 cut(s)	273, 285
HphI	GGTGA	8 cut(s)	45, 84, 167, 738, 762, 789, 813, 874
Hpy166II	GTNNAC	3 cut(s)	746, 770, 900
Hpy188I	TCNGA	5 cut(s)	19, 303, 523, 601, 891
Hpy188III	TCNNGA	3 cut(s)	273, 328, 998
Hpy8I	GTNNAC	3 cut(s)	746, 770, 900
Hpy99I	CGWCG	2 cut(s)	778, 829
HpyAV	CCTTC	2 cut(s)	121, 858
HpyCH4III	ACNGT	4 cut(s)	198, 719, 789, 976
HpyCH4IV	ACGT	3 cut(s)	349, 444, 933
HpyCH4V	TGCA	8 cut(s)	251, 343, 409, 460, 490, 680, 913, 953
HpyF3I	CTNAG	3 cut(s)	201, 235, 708
HpySE526I	ACGT	3 cut(s)	349, 444, 933
Hsp92II	CATG	2 cut(s)	70, 613
HspAI	GCGC	2 cut(s)	368, 734
Kpn2I	TCCGGA	1 cut(s)	272
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	8 cut(s)	97, 262, 523, 535, 601, 794, 818, 844
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	2 cut(s)	275, 278
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	6 cut(s)	101, 107, 266, 435, 549, 804
MaeII	ACGT	3 cut(s)	349, 444, 933
MalI	GATC	8 cut(s)	99, 264, 525, 537, 603, 796, 820, 846
MboI	GATC	8 cut(s)	97, 262, 523, 535, 601, 794, 818, 844
MboII	GAAGA	8 cut(s)	20, 50, 53, 71, 210, 492, 566, 629
MflI	RGATCY	2 cut(s)	262, 523
MhlI	GDGCHC	1 cut(s)	66
MluCI	AATT	4 cut(s)	229, 242, 885, 928
MlyI	GAGTC	1 cut(s)	460
MroI	TCCGGA	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	6 cut(s)	308, 381, 431, 480, 980, 1006
MspA1I	CMGCKG	3 cut(s)	340, 674, 731
MspCI	CTTAAG	1 cut(s)	479
MspI	CCGG	2 cut(s)	273, 285
Mva1269I	GAATGC	1 cut(s)	492
NdeII	GATC	8 cut(s)	97, 262, 523, 535, 601, 794, 818, 844
NheI	GCTAGC	1 cut(s)	548
NlaIII	CATG	2 cut(s)	70, 613
NlaIV	GGNNCC	1 cut(s)	271
NotI	GCGGCCGC	1 cut(s)	669
NsbI	TGCGCA	2 cut(s)	369, 735
PaeR7I	CTCGAG	1 cut(s)	996
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	4 cut(s)	14, 254, 762, 947
PflFI	GACNNNGTC	1 cut(s)	318
PleI	GAGTC	1 cut(s)	459
PpsI	GAGTC	1 cut(s)	459
Psp124BI	GAGCTC	1 cut(s)	66
Psp1406I	AACGTT	2 cut(s)	349, 444
PspN4I	GGNNCC	1 cut(s)	271
PstI	CTGCAG	2 cut(s)	253, 682
PstNI	CAGNNNCTG	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	262, 523
PsyI	GACNNNGTC	1 cut(s)	318
PvuII	CAGCTG	2 cut(s)	340, 731
SacI	GAGCTC	1 cut(s)	66
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	6 cut(s)	308, 381, 431, 480, 980, 1006
Sau3AI	GATC	8 cut(s)	97, 262, 523, 535, 601, 794, 818, 844
SchI	GAGTC	1 cut(s)	460
SduI	GDGCHC	1 cut(s)	66
SfaNI	GCATC	1 cut(s)	349
SfcI	CTRYAG	2 cut(s)	249, 678
Sfr274I	CTCGAG	1 cut(s)	996
SlaI	CTCGAG	1 cut(s)	996
SmlI	CTYRAG	3 cut(s)	222, 479, 996
SmoI	CTYRAG	3 cut(s)	222, 479, 996
SpeI	ACTAGT	1 cut(s)	803
Sse9I	AATT	4 cut(s)	229, 242, 885, 928
SsiI	CCGC	5 cut(s)	335, 668, 672, 704, 860
SspMI	CTAG	6 cut(s)	101, 107, 266, 435, 549, 804
SstI	GAGCTC	1 cut(s)	66
TaaI	ACNGT	4 cut(s)	198, 719, 789, 976
TaiI	ACGT	3 cut(s)	352, 447, 936
TaqI	TCGA	2 cut(s)	114, 997
TasI	AATT	4 cut(s)	229, 242, 885, 928
TauI	GCSGC	2 cut(s)	671, 674
TfiI	GAWTC	4 cut(s)	14, 254, 762, 947
Tru1I	TTAA	6 cut(s)	308, 381, 431, 480, 980, 1006
Tru9I	TTAA	6 cut(s)	308, 381, 431, 480, 980, 1006
TspDTI	ATGAA	2 cut(s)	566, 598
TspGWI	ACGGA	2 cut(s)	150, 156
Tth111I	GACNNNGTC	1 cut(s)	318
Vha464I	CTTAAG	1 cut(s)	479
XapI	RAATTY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	996
XmiI	GTMKAC	1 cut(s)	899
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	6 cut(s)	101, 107, 266, 435, 549, 804

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.