Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Forward (+)

1503232 .. 1504494

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGAGAGAAGAAGATTCCAATTGGTTTGCTAAATGGGAAGAAGAGCTTCCGTCGCCGGAGGAACTCATACCTTTATCTCAATCTTTAATCACGCCTGATCTCGCCATCGCCTTCGATCTCCACCGTAACAACAACTCAAACTCCGGTCAACCTCTACCTCAAACCACACCGCCACAACCCAATTCCTCAGCCGAAATCGCCGGAGACTCTACCGGAGACGAACCAGCAAGAACGCTAAAACGACCGCGTTTAGTATGGACGCCACAGCTACACAAACGTTTCGTAGACGCGGTGGCTCATCTCGGGATAAAAAACGCGGTTCCTAAAACCATCATGCAGCTTATGAGCGTTGATGGTTTAACAAGAGAAAACGTCGCTAGCCATTTGCAAAAATACAGACTTTACCTCAAAAGAATGAAATCCGGCGGCGGAGGAGGCGGCAGCGGTGATTCCGATCATCTCTTTGCCAGCTCACCTGTTCCTCCACATTTCCTCCATCCGACAAGTAGACAGAGCTCCGACCTTTTCATACCCTCTTTTGTCCCAATTTCAACTCAGCAGCAACATATCGCAGCACCACCGTCTCAGTTCCTCCACCGACAAATCTCCGCCGTTAATTTCACTTCACCGACCAAAGCGACCGACCAAGCAATGTTCTTGGCTAGGCAGCAGAGTGAACTACAGCAACCAGTTTTCAAACCATCTTCATTGCATTTACATAGTCAAGTCGCTAATTACACGCAAGATTTGAAATCAGGAGCCAAAACGGTCTTGACTCTGTTTCCAACTCGAGACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

266

Amino Acids

29.44

Weight (kDa)

7.21

Isoelectric Point (pI)

63.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	84 - 133	8.5e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	285, 508
AccII	CGCG	3 cut(s)	247, 290, 317
AciI	CCGC	9 cut(s)	170, 245, 290, 317, 426, 429, 438, 444, 609
AclI	AACGTT	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	260
AgsI	TTSAA	3 cut(s)	552, 697, 751
AluBI	AGCT	5 cut(s)	46, 268, 340, 471, 516
AluI	AGCT	5 cut(s)	46, 268, 340, 471, 516
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	4 cut(s)	198, 210, 588, 786
Ama87I	CYCGRG	2 cut(s)	302, 789
ApeKI	GCWGC	5 cut(s)	337, 441, 559, 572, 667
Asp700I	GAANNNNTTC	1 cut(s)	45
AsuHPI	GGTGA	3 cut(s)	458, 465, 618
AsuNHI	GCTAGC	1 cut(s)	377
AvaI	CYCGRG	2 cut(s)	302, 789
BanII	GRGCYC	1 cut(s)	518
Bbv12I	GWGCWC	1 cut(s)	518
BbvCI	CCTCAGC	1 cut(s)	187
BbvI	GCAGC	5 cut(s)	349, 453, 571, 584, 679
BccI	CCATC	5 cut(s)	113, 338, 347, 504, 709
BceAI	ACGGC	1 cut(s)	596
BcoDI	GTCTC	4 cut(s)	198, 210, 588, 786
BfaI	CTAG	2 cut(s)	378, 663
BfmI	CTRYAG	1 cut(s)	680
BisI	GCNGC	7 cut(s)	338, 427, 439, 442, 560, 573, 668
BlsI	GCNGC	7 cut(s)	339, 428, 440, 443, 561, 574, 669
BmeT110I	CYCGRG	2 cut(s)	302, 789
BmiI	GGNNCC	2 cut(s)	321, 760
BmtI	GCTAGC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	187
BsaBI	GATNNNNATC	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	260
BsaWI	WCCGGW	2 cut(s)	143, 212
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 477, 507
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	657, 707
Bse8I	GATNNNNATC	1 cut(s)	453
BseGI	GGATG	1 cut(s)	496
BseJI	GATNNNNATC	1 cut(s)	453
BseMI	GCAATG	2 cut(s)	657, 707
BseMII	CTCAG	3 cut(s)	201, 569, 599
BseNI	ACTGG	1 cut(s)	689
BseRI	GAGGAG	1 cut(s)	447
BseXI	GCAGC	5 cut(s)	349, 453, 571, 584, 679
Bsh1236I	CGCG	3 cut(s)	247, 290, 317
Bsh1285I	CGRYCG	2 cut(s)	245, 642
BsiEI	CGRYCG	2 cut(s)	245, 642
BsiHKAI	GWGCWC	1 cut(s)	518
BsiHKCI	CYCGRG	2 cut(s)	302, 789
BsiSI	CCGG	5 cut(s)	56, 144, 201, 213, 423
BslFI	GGGAC	1 cut(s)	527
BsmAI	GTCTC	4 cut(s)	198, 210, 588, 786
BsmBI	CGTCTC	3 cut(s)	210, 588, 786
BsmFI	GGGAC	1 cut(s)	527
BsoBI	CYCGRG	2 cut(s)	302, 789
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	3 cut(s)	97, 115, 454
BspACI	CCGC	9 cut(s)	170, 245, 290, 317, 426, 429, 438, 444, 609
BspCNI	CTCAG	3 cut(s)	200, 568, 598
BspFNI	CGCG	3 cut(s)	247, 290, 317
BspLI	GGNNCC	2 cut(s)	321, 760
BspOI	GCTAGC	1 cut(s)	381
BspQI	GCTCTTC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	657, 707
BsrI	ACTGG	1 cut(s)	689
BssMI	GATC	3 cut(s)	97, 115, 454
BssNI	GRCGYC	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	125, 582, 769
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	379, 469
BstDEI	CTNAG	3 cut(s)	187, 555, 585
BstF5I	GGATG	1 cut(s)	496
BstFNI	CGCG	3 cut(s)	247, 290, 317
BstKTI	GATC	3 cut(s)	100, 118, 457
BstMAI	GTCTC	4 cut(s)	198, 210, 588, 786
BstMBI	GATC	3 cut(s)	97, 115, 454
BstMCI	CGRYCG	2 cut(s)	245, 642
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 197, 435
BstSFI	CTRYAG	1 cut(s)	680
BstUI	CGCG	3 cut(s)	247, 290, 317
BstV1I	GCAGC	5 cut(s)	349, 453, 571, 584, 679
BtgZI	GCGATG	1 cut(s)	91
BtsCI	GGATG	1 cut(s)	496
Cac8I	GCNNGC	2 cut(s)	379, 469
CseI	GACGC	2 cut(s)	268, 296
CviAII	CATG	1 cut(s)	334
DdeI	CTNAG	3 cut(s)	187, 555, 585
DpnI	GATC	3 cut(s)	99, 117, 456
DpnII	GATC	3 cut(s)	97, 115, 454
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
EciI	GGCGGA	2 cut(s)	444, 598
Ecl136II	GAGCTC	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	516
Eco88I	CYCGRG	2 cut(s)	302, 789
EcoICRI	GAGCTC	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	518
Esp3I	CGTCTC	3 cut(s)	210, 588, 786
FaeI	CATG	1 cut(s)	337
FaiI	YATR	7 cut(s)	68, 256, 335, 344, 530, 567, 720
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	1 cut(s)	333
FblI	GTMKAC	2 cut(s)	285, 508
Fnu4HI	GCNGC	7 cut(s)	338, 427, 439, 442, 560, 573, 668
FokI	GGATG	1 cut(s)	483
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	7 cut(s)	338, 427, 439, 442, 560, 573, 668
FspBI	CTAG	2 cut(s)	378, 663
GluI	GCNGC	7 cut(s)	338, 427, 439, 442, 560, 573, 668
HapII	CCGG	5 cut(s)	56, 144, 201, 213, 423
HgaI	GACGC	2 cut(s)	268, 296
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	337
HincII	GTYRAC	1 cut(s)	149
HindII	GTYRAC	1 cut(s)	149
HinfI	GANTC	4 cut(s)	14, 206, 449, 775
HpaII	CCGG	5 cut(s)	56, 144, 201, 213, 423
HphI	GGTGA	3 cut(s)	458, 465, 618
Hpy166II	GTNNAC	4 cut(s)	149, 286, 509, 677
Hpy188I	TCNGA	3 cut(s)	454, 501, 520
Hpy188III	TCNNGA	4 cut(s)	304, 756, 772, 791
Hpy8I	GTNNAC	4 cut(s)	149, 286, 509, 677
Hpy99I	CGWCG	2 cut(s)	55, 377
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	3 cut(s)	125, 582, 769
HpyCH4IV	ACGT	2 cut(s)	277, 372
HpyCH4V	TGCA	3 cut(s)	337, 388, 712
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 197, 435
HpyF3I	CTNAG	3 cut(s)	187, 555, 585
HpySE526I	ACGT	2 cut(s)	277, 372
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	97, 115, 454
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	2 cut(s)	521, 758
Lsp1109I	GCAGC	5 cut(s)	349, 453, 571, 584, 679
MaeI	CTAG	2 cut(s)	378, 663
MaeII	ACGT	2 cut(s)	277, 372
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	3 cut(s)	99, 117, 456
MboI	GATC	3 cut(s)	97, 115, 454
MboII	GAAGA	5 cut(s)	20, 23, 50, 53, 696
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	5 cut(s)	19, 181, 546, 616, 733
MlyI	GAGTC	2 cut(s)	200, 769
MmeI	TCCRAC	2 cut(s)	524, 543
MroXI	GAANNNNTTC	1 cut(s)	45
MseI	TTAA	3 cut(s)	86, 359, 615
MspA1I	CMGCKG	1 cut(s)	444
MspI	CCGG	5 cut(s)	56, 144, 201, 213, 423
MunI	CAATTG	1 cut(s)	19
MvnI	CGCG	3 cut(s)	247, 290, 317
MwoI	GCNNNNNNNGC	3 cut(s)	52, 197, 435
NdeII	GATC	3 cut(s)	97, 115, 454
NheI	GCTAGC	1 cut(s)	377
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	2 cut(s)	321, 760
PaeR7I	CTCGAG	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	14, 449
PkrI	GCNGC	7 cut(s)	339, 428, 440, 443, 561, 574, 669
PleI	GAGTC	2 cut(s)	200, 769
PpsI	GAGTC	2 cut(s)	200, 769
Psp124BI	GAGCTC	1 cut(s)	518
Psp1406I	AACGTT	1 cut(s)	277
PspN4I	GGNNCC	2 cut(s)	321, 760
SacI	GAGCTC	1 cut(s)	518
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	3 cut(s)	86, 359, 615
SatI	GCNGC	7 cut(s)	338, 427, 439, 442, 560, 573, 668
Sau3AI	GATC	3 cut(s)	97, 115, 454
SchI	GAGTC	2 cut(s)	200, 769
SduI	GDGCHC	1 cut(s)	518
SfcI	CTRYAG	1 cut(s)	680
Sfr274I	CTCGAG	1 cut(s)	789
SlaI	CTCGAG	1 cut(s)	789
SmlI	CTYRAG	1 cut(s)	789
SmoI	CTYRAG	1 cut(s)	789
Sse9I	AATT	5 cut(s)	19, 181, 546, 616, 733
SsiI	CCGC	9 cut(s)	170, 245, 290, 317, 426, 429, 438, 444, 609
SspMI	CTAG	2 cut(s)	378, 663
SstI	GAGCTC	1 cut(s)	518
TaaI	ACNGT	3 cut(s)	125, 582, 769
TaiI	ACGT	2 cut(s)	280, 375
TaqI	TCGA	2 cut(s)	114, 790
TaqII	GACCGA	1 cut(s)	656
TasI	AATT	5 cut(s)	19, 181, 546, 616, 733
TauI	GCSGC	2 cut(s)	429, 441
TfiI	GAWTC	2 cut(s)	14, 449
Tru1I	TTAA	3 cut(s)	86, 359, 615
Tru9I	TTAA	3 cut(s)	86, 359, 615
TseI	GCWGC	5 cut(s)	337, 441, 559, 572, 667
TspDTI	ATGAA	3 cut(s)	431, 517, 696
TspGWI	ACGGA	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	789
XmiI	GTMKAC	2 cut(s)	285, 508
XmnI	GAANNNNTTC	1 cut(s)	45
XspI	CTAG	2 cut(s)	378, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.