Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Reverse (-)

5166759 .. 5167730

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G027500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGAGGGAAGATGAGTCCAATTGGTTCTCCAGGTGGGAAGAAGAGCTTCCTTCACCCGAGGAGCTCATGCCCTTATCCCAAACCCTAATCACTCCTGATCTTGCCTTGGCCTTTGACATCAGAAACAACAACCCCAACAACCCAAGTAGCCCCCAAAACCAACAACCCCCACAACCTCCTCAGCCACCACATACCCCTCCACCTCCTCCTCCTTCCTCCTTGCCTCCCGCCACCCCGACCCACCCCAACTCCTCCGCCGAATTCGCCGATTCTGCCGACCTGGGGTCTGGTGCGGGCGGGGAAGAGCCCGCCCGCACGCTCAAGCGGCCCCGCCTCGTGTGGACCCCGCAGCTCCACAAGCGCTTTGTGGACGCCGTGGCACACTTGGGGATCAAGAACGCCGTCCCCAAGACCATAATGCAGCTCATGAGCGTGGACGGCCTCACCCGGGAGAATGTTGCCAGCCATTTGCAGAAGTACCGTCTCTATCTCAAGCGTATGCAGGGCTTGTCCGGCGGAGGCAGCGGCGGCGGCGGAGGCGGAGGCGGAGGATTGGCAGCCTCCGCAGACCCCGCCACCGATCATTTGTTTGCAAGCTCGCCGGTTCCGGCTCATTTCCTGCACCCGCATCCCGGGGGAAGGCCCAATTCGGAGCATTTCATGCCCTTCGTGCCGGTGGCTCTGCAGCAGCACCATCACCAGCAGCAGCAGCAGCAGCAGCAGATGGCTGCGGCTGCGGCTGCGGCGGTGGCAGCCCATCCCCAGTATCACAGGCAGGTGGGGCATTTTGGGTCCCCACCAAATGGCCAATTTGAGCATCCATTCTTGGCAAGGCAGTCGTCACAGCCAGTTCATAGGATGGGGGCGCCACTGCATAATCCAGTGCCAGGAAGCTATGTAGAGGACTTGGAATCAGCTAATGCAACTGGTGGCAGGAAAGTTCTTACTCTGTTTCCAACCGGGGAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

324

Amino Acids

34.71

Weight (kDa)

6.43

Isoelectric Point (pI)

69.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	766
Acc36I	ACCTGC	1 cut(s)	766
AccB1I	GGYRCC	1 cut(s)	865
AccB7I	CCANNNNNTGG	1 cut(s)	803
AclWI	GGATC	1 cut(s)	398
AcoI	YGGCCR	1 cut(s)	805
AcsI	RAATTY	1 cut(s)	260
AcyI	GRCGYC	2 cut(s)	372, 866
AfaI	GTAC	1 cut(s)	479
AfeI	AGCGCT	1 cut(s)	362
AfiI	CCNNNNNNNGG	6 cut(s)	282, 448, 632, 639, 803, 887
AhdI	GACNNNNNGTC	1 cut(s)	283
AjnI	CCWGG	3 cut(s)	29, 279, 886
AluBI	AGCT	7 cut(s)	46, 64, 352, 424, 597, 894, 917
AluI	AGCT	7 cut(s)	46, 64, 352, 424, 597, 894, 917
Alw21I	GWGCWC	1 cut(s)	66
Alw26I	GTCTC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	398
Ama87I	CYCGRG	3 cut(s)	56, 447, 632
Aor51HI	AGCGCT	1 cut(s)	362
AoxI	GGCC	5 cut(s)	108, 326, 439, 641, 805
ApoI	RAATTY	1 cut(s)	260
Asp700I	GAANNNNTTC	1 cut(s)	45
AspLEI	GCGC	2 cut(s)	363, 868
AspS9I	GGNCC	4 cut(s)	327, 342, 642, 792
AsuC2I	CCSGG	5 cut(s)	448, 449, 633, 634, 961
AsuHPI	GGTGA	3 cut(s)	45, 436, 689
AvaI	CYCGRG	3 cut(s)	56, 447, 632
AvaII	GGWCC	2 cut(s)	342, 792
BalI	TGGCCA	1 cut(s)	807
BanI	GGYRCC	1 cut(s)	865
BanII	GRGCYC	2 cut(s)	66, 309
BauI	CACGAG	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	66
BbvCI	CCTCAGC	1 cut(s)	180
BccI	CCATC	4 cut(s)	702, 718, 765, 853
BceAI	ACGGC	3 cut(s)	359, 386, 454
BcgI	CGANNNNNNTGC	2 cut(s)	819, 853
BciT130I	CCWGG	3 cut(s)	31, 281, 888
BcnI	CCSGG	5 cut(s)	448, 449, 633, 634, 961
BcoDI	GTCTC	1 cut(s)	488
BfmI	CTRYAG	1 cut(s)	683
BfoI	RGCGCY	2 cut(s)	364, 869
BfuAI	ACCTGC	1 cut(s)	766
Bme1390I	CCNGG	8 cut(s)	31, 281, 448, 449, 633, 634, 888, 961
Bme18I	GGWCC	2 cut(s)	342, 792
BmeRI	GACNNNNNGTC	1 cut(s)	283
BmeT110I	CYCGRG	3 cut(s)	56, 447, 632
BmgT120I	GGNCC	4 cut(s)	327, 342, 642, 792
BmiI	GGNNCC	6 cut(s)	329, 344, 606, 793, 794, 867
BmrFI	CCNGG	8 cut(s)	31, 281, 448, 449, 633, 634, 888, 961
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	2 cut(s)	637, 826
BmuI	ACTGGG	1 cut(s)	757
BpmI	CTGGAG	1 cut(s)	13
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	305, 476
BpuMI	CCSGG	5 cut(s)	448, 449, 633, 634, 961
BsaHI	GRCGYC	2 cut(s)	372, 866
BsaJI	CCNNGG	8 cut(s)	57, 105, 280, 375, 447, 632, 633, 960
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	282, 448, 632, 639, 803, 887
Bse118I	RCCGGY	2 cut(s)	601, 673
Bse1I	ACTGG	4 cut(s)	763, 848, 881, 931
BseBI	CCWGG	3 cut(s)	31, 281, 888
BseDI	CCNNGG	8 cut(s)	57, 105, 280, 375, 447, 632, 633, 960
BseGI	GGATG	4 cut(s)	628, 757, 817, 864
BseLI	CCNNNNNNNGG	6 cut(s)	282, 448, 632, 639, 803, 887
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	4 cut(s)	763, 848, 881, 931
BseRI	GAGGAG	5 cut(s)	74, 168, 195, 198, 241
BsgI	GTGCAG	1 cut(s)	605
BshFI	GGCC	5 cut(s)	110, 328, 441, 643, 807
BshNI	GGYRCC	1 cut(s)	865
BsiHKAI	GWGCWC	1 cut(s)	66
BsiHKCI	CYCGRG	3 cut(s)	56, 447, 632
BsiSI	CCGG	7 cut(s)	448, 513, 602, 608, 633, 674, 960
BslFI	GGGAC	2 cut(s)	389, 778
BslI	CCNNNNNNNGG	6 cut(s)	282, 448, 632, 639, 803, 887
BsmAI	GTCTC	1 cut(s)	488
BsmBI	CGTCTC	1 cut(s)	488
BsmFI	GGGAC	2 cut(s)	389, 778
BsnI	GGCC	5 cut(s)	110, 328, 441, 643, 807
BsoBI	CYCGRG	3 cut(s)	56, 447, 632
Bsp1286I	GDGCHC	2 cut(s)	66, 309
Bsp143I	GATC	3 cut(s)	97, 390, 580
BspANI	GGCC	5 cut(s)	110, 328, 441, 643, 807
BspCNI	CTCAG	1 cut(s)	193
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	6 cut(s)	329, 344, 606, 793, 794, 867
BspMAI	CTGCAG	1 cut(s)	687
BspMI	ACCTGC	1 cut(s)	766
BspPI	GGATC	1 cut(s)	398
BspQI	GCTCTTC	2 cut(s)	36, 297
BspT107I	GGYRCC	1 cut(s)	865
BsrFI	RCCGGY	2 cut(s)	601, 673
BsrI	ACTGG	4 cut(s)	763, 848, 881, 931
BssAI	RCCGGY	2 cut(s)	601, 673
BssECI	CCNNGG	8 cut(s)	57, 105, 280, 375, 447, 632, 633, 960
BssMI	GATC	3 cut(s)	97, 390, 580
BssNI	GRCGYC	2 cut(s)	372, 866
BssSI	CACGAG	1 cut(s)	335
BssT1I	CCWWGG	1 cut(s)	105
Bst2BI	CACGAG	1 cut(s)	335
Bst2UI	CCWGG	3 cut(s)	31, 281, 888
Bst4CI	ACNGT	1 cut(s)	482
Bst6I	CTCTTC	2 cut(s)	36, 297
BstACI	GRCGYC	2 cut(s)	372, 866
BstAPI	GCANNNNNTGC	1 cut(s)	661
BstC8I	GCNNGC	7 cut(s)	295, 309, 313, 317, 463, 595, 599
BstDEI	CTNAG	1 cut(s)	180
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	4 cut(s)	628, 757, 817, 864
BstH2I	RGCGCY	2 cut(s)	364, 869
BstHHI	GCGC	2 cut(s)	363, 868
BstKTI	GATC	3 cut(s)	100, 393, 583
BstMAI	GTCTC	1 cut(s)	488
BstMBI	GATC	3 cut(s)	97, 390, 580
BstNI	CCWGG	3 cut(s)	31, 281, 888
BstSCI	CCNGG	8 cut(s)	29, 279, 446, 447, 631, 632, 886, 959
BstSFI	CTRYAG	1 cut(s)	683
BsuRI	GGCC	5 cut(s)	110, 328, 441, 643, 807
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	4 cut(s)	628, 757, 817, 864
BtsI	GCAGTG	1 cut(s)	869
BtsIMutI	CAGTG	2 cut(s)	869, 888
BveI	ACCTGC	1 cut(s)	766
Cac8I	GCNNGC	7 cut(s)	295, 309, 313, 317, 463, 595, 599
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	2 cut(s)	363, 868
Cfr10I	RCCGGY	2 cut(s)	601, 673
Cfr13I	GGNCC	4 cut(s)	327, 342, 642, 792
Cfr9I	CCCGGG	2 cut(s)	447, 632
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	3 cut(s)	67, 427, 661
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	1 cut(s)	180
DinI	GGCGCC	1 cut(s)	867
DpnI	GATC	3 cut(s)	99, 392, 582
DpnII	GATC	3 cut(s)	97, 390, 580
DriI	GACNNNNNGTC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	805
Eam1104I	CTCTTC	2 cut(s)	36, 297
Eam1105I	GACNNNNNGTC	1 cut(s)	283
EarI	CTCTTC	2 cut(s)	36, 297
EciI	GGCGGA	5 cut(s)	244, 531, 549, 555, 561
Ecl136II	GAGCTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	2 cut(s)	66, 309
Eco47I	GGWCC	2 cut(s)	342, 792
Eco47III	AGCGCT	1 cut(s)	362
Eco53kI	GAGCTC	1 cut(s)	64
Eco88I	CYCGRG	3 cut(s)	56, 447, 632
EcoICRI	GAGCTC	1 cut(s)	64
EcoO109I	RGGNCCY	1 cut(s)	792
EcoRI	GAATTC	1 cut(s)	260
EcoRII	CCWGG	3 cut(s)	29, 279, 886
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	2 cut(s)	66, 309
EgeI	GGCGCC	1 cut(s)	867
EheI	GGCGCC	1 cut(s)	867
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	488
FaeI	CATG	3 cut(s)	70, 430, 664
FaiI	YATR	9 cut(s)	68, 192, 416, 428, 500, 662, 855, 876, 897
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FaqI	GGGAC	2 cut(s)	389, 778
FatI	CATG	3 cut(s)	66, 426, 660
FauI	CCCGC	9 cut(s)	235, 286, 290, 316, 320, 338, 354, 580, 633
FokI	GGATG	4 cut(s)	615, 744, 804, 871
FriOI	GRGCYC	2 cut(s)	66, 309
GlaI	GCGC	2 cut(s)	362, 867
GsuI	CTGGAG	1 cut(s)	13
HaeII	RGCGCY	2 cut(s)	364, 869
HaeIII	GGCC	5 cut(s)	110, 328, 441, 643, 807
HapII	CCGG	7 cut(s)	448, 513, 602, 608, 633, 674, 960
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	2 cut(s)	363, 868
Hin1I	GRCGYC	2 cut(s)	372, 866
Hin1II	CATG	3 cut(s)	70, 430, 664
Hin6I	GCGC	2 cut(s)	361, 866
HinP1I	GCGC	2 cut(s)	361, 866
HinfI	GANTC	3 cut(s)	14, 269, 911
HpaII	CCGG	7 cut(s)	448, 513, 602, 608, 633, 674, 960
HphI	GGTGA	3 cut(s)	45, 436, 689
Hpy166II	GTNNAC	3 cut(s)	342, 370, 436
Hpy188I	TCNGA	2 cut(s)	122, 652
Hpy188III	TCNNGA	3 cut(s)	95, 394, 427
Hpy8I	GTNNAC	3 cut(s)	342, 370, 436
HpyAV	CCTTC	4 cut(s)	60, 222, 633, 676
HpyCH4III	ACNGT	1 cut(s)	482
HpyCH4V	TGCA	8 cut(s)	421, 472, 502, 593, 622, 685, 874, 923
HpyF3I	CTNAG	1 cut(s)	180
Hsp92I	GRCGYC	2 cut(s)	372, 866
Hsp92II	CATG	3 cut(s)	70, 430, 664
HspAI	GCGC	2 cut(s)	361, 866
KasI	GGCGCC	1 cut(s)	865
KflI	GGGWCCC	1 cut(s)	792
Kzo9I	GATC	3 cut(s)	97, 390, 580
LguI	GCTCTTC	2 cut(s)	36, 297
LmnI	GCTCC	3 cut(s)	61, 357, 652
LweI	GCATC	2 cut(s)	637, 826
MaeIII	GTNAC	1 cut(s)	840
MalI	GATC	3 cut(s)	99, 392, 582
MboI	GATC	3 cut(s)	97, 390, 580
MboII	GAAGA	4 cut(s)	20, 50, 53, 314
MfeI	CAATTG	1 cut(s)	19
MhlI	GDGCHC	2 cut(s)	66, 309
MlsI	TGGCCA	1 cut(s)	807
MluCI	AATT	4 cut(s)	19, 260, 646, 809
MluNI	TGGCCA	1 cut(s)	807
Mly113I	GGCGCC	1 cut(s)	866
MlyI	GAGTC	1 cut(s)	23
Mox20I	TGGCCA	1 cut(s)	807
MroXI	GAANNNNTTC	1 cut(s)	45
MscI	TGGCCA	1 cut(s)	807
MslI	CAYNNNNRTG	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	807
MspA1I	CMGCKG	1 cut(s)	525
MspI	CCGG	7 cut(s)	448, 513, 602, 608, 633, 674, 960
MspR9I	CCNGG	8 cut(s)	31, 281, 448, 449, 633, 634, 888, 961
MunI	CAATTG	1 cut(s)	19
MvaI	CCWGG	3 cut(s)	31, 281, 888
NarI	GGCGCC	1 cut(s)	866
NciI	CCSGG	5 cut(s)	448, 449, 633, 634, 961
NdeII	GATC	3 cut(s)	97, 390, 580
NlaIII	CATG	3 cut(s)	70, 430, 664
NlaIV	GGNNCC	6 cut(s)	329, 344, 606, 793, 794, 867
NmuCI	GTSAC	1 cut(s)	840
PagI	TCATGA	1 cut(s)	426
PaqCI	CACCTGC	1 cut(s)	766
PciSI	GCTCTTC	2 cut(s)	36, 297
PdmI	GAANNNNTTC	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	269, 911
PflMI	CCANNNNNTGG	1 cut(s)	803
PleI	GAGTC	1 cut(s)	22
PluTI	GGCGCC	1 cut(s)	869
PpsI	GAGTC	1 cut(s)	22
PpuMI	RGGWCCY	1 cut(s)	792
Psp124BI	GAGCTC	1 cut(s)	66
Psp5II	RGGWCCY	1 cut(s)	792
Psp6I	CCWGG	3 cut(s)	29, 279, 886
PspGI	CCWGG	3 cut(s)	29, 279, 886
PspN4I	GGNNCC	6 cut(s)	329, 344, 606, 793, 794, 867
PspPI	GGNCC	4 cut(s)	327, 342, 642, 792
PspPPI	RGGWCCY	1 cut(s)	792
PstI	CTGCAG	1 cut(s)	687
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
RseI	CAYNNNNRTG	1 cut(s)	431
SacI	GAGCTC	1 cut(s)	66
SapI	GCTCTTC	2 cut(s)	36, 297
Sau3AI	GATC	3 cut(s)	97, 390, 580
Sau96I	GGNCC	4 cut(s)	327, 342, 642, 792
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	8 cut(s)	31, 281, 448, 449, 633, 634, 888, 961
SduI	GDGCHC	2 cut(s)	66, 309
SfaNI	GCATC	2 cut(s)	637, 826
SfcI	CTRYAG	1 cut(s)	683
SfoI	GGCGCC	1 cut(s)	867
SinI	GGWCC	2 cut(s)	342, 792
SmaI	CCCGGG	2 cut(s)	449, 634
SmiMI	CAYNNNNRTG	1 cut(s)	431
SmlI	CTYRAG	2 cut(s)	320, 491
SmoI	CTYRAG	2 cut(s)	320, 491
Sse9I	AATT	4 cut(s)	19, 260, 646, 809
SspDI	GGCGCC	1 cut(s)	865
SstI	GAGCTC	1 cut(s)	66
StyD4I	CCNGG	8 cut(s)	29, 279, 446, 447, 631, 632, 886, 959
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	482
TasI	AATT	4 cut(s)	19, 260, 646, 809
TauI	GCSGC	7 cut(s)	328, 528, 531, 534, 734, 740, 746
TfiI	GAWTC	2 cut(s)	269, 911
TscAI	CASTG	2 cut(s)	876, 888
TseFI	GTSAC	1 cut(s)	840
Tsp45I	GTSAC	1 cut(s)	840
TspDTI	ATGAA	2 cut(s)	649, 842
TspMI	CCCGGG	2 cut(s)	447, 632
TspRI	CASTG	2 cut(s)	876, 888
Van91I	CCANNNNNTGG	1 cut(s)	803
VpaK11BI	GGWCC	2 cut(s)	342, 792
XapI	RAATTY	1 cut(s)	260
XmaI	CCCGGG	2 cut(s)	447, 632
XmnI	GAANNNNTTC	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.