Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Reverse (-)

11873273 .. 11874263

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1092500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGGGAAGATGATGAGTCGAATTGGTTCTCAAGGTGGGAAGAAGAGCTGCCTTCTCCTGAGGAGCTCATGCCCTTATCCCAAACCCTTATCACTCCTGATCTTGCCCTCGCCTTTGACATCTCCCACCAACACCCTCCTCCCCATTCCCAATCCCAACCCCAACCTCAACCCCCCCACACACCCCCTCCCCCTCCTCCTCCTCCCAATTCCCTTCCTCCCGCTACCCCCACCCACCCCAACTCCTCCGCTGACTTCGCCGACTCCGCTGACTTGGGCTCCGGCGCCGCCGGCGATGAGCCCGCCCGCACCCTCAAGCGCCCCCGCCTCGTCTGGACCCCCCAGCTCCACAAGCGCTTCGTTGACGCCGTTGCCCACCTCGGCATCAAGAACGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGACGGCCTCACCCGCGAGAATGTTGCCAGCCATCTGCAGAAGTATCGTCTTTATCTCAAGCGGATGCAGGGCTTGTCTGGAGGTTCTGCAGGTGGTGCCGGCGGGGGTGCCGCTGGCTTGGCCGCCTCTGCCGACCCTGCCACCGATCATTTGTTCGCCAGCTCCCCAGTTCCGGCTCATTTCCTGCACCCGCACCCTGGGGGGCGGCCCAATTCCGAGCATTTCTTGCCGTTTGTGCCGGTGGCTCTGCAGCAGCACCACCATCACCAGCAGCAGCAGCAACAGCAGCAAATTGCAGCGGCAGTGGCAGCCCATCCGCAGTATCACAGGCAGGTGGGGCATTTTGGGTCGCCACCAAACGGGCAATTTGAGCACCCATTCTTGGCGAGGCAGTCGTCACAGCCGGTTCATAGGATGGGGGCACCGCTGCACAATTCAGGCTATGTAGAGGACTTGGAATCAGCGAATGCATCTGGTGGCAGGAAAGTTCTTACTCTATTTCCAACTGGGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

316

Amino Acids

34.05

Weight (kDa)

6.35

Isoelectric Point (pI)

62.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	110 - 159	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	509, 751
Acc36I	ACCTGC	2 cut(s)	509, 751
AccB1I	GGYRCC	4 cut(s)	284, 524, 536, 850
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	1 cut(s)	444
AcoI	YGGCCR	1 cut(s)	549
AcyI	GRCGYC	2 cut(s)	285, 366
AfeI	AGCGCT	1 cut(s)	356
AfiI	CCNNNNNNNGG	4 cut(s)	601, 626, 788, 811
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	5 cut(s)	49, 67, 346, 418, 591
AluI	AGCT	5 cut(s)	49, 67, 346, 418, 591
Alw21I	GWGCWC	2 cut(s)	69, 804
Aor51HI	AGCGCT	1 cut(s)	356
AoxI	GGCC	3 cut(s)	433, 549, 635
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	3 cut(s)	287, 321, 357
AspS9I	GGNCC	2 cut(s)	336, 636
AsuHPI	GGTGA	2 cut(s)	430, 686
AvaII	GGWCC	1 cut(s)	336
AxyI	CCTNAGG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	853
BanI	GGYRCC	4 cut(s)	284, 524, 536, 850
BanII	GRGCYC	3 cut(s)	69, 281, 303
Bbv12I	GWGCWC	2 cut(s)	69, 804
BccI	CCATC	4 cut(s)	468, 699, 750, 838
BceAI	ACGGC	4 cut(s)	353, 380, 448, 643
BcgI	CGANNNNNNTGC	4 cut(s)	434, 455, 468, 489
BciT130I	CCWGG	1 cut(s)	627
BfmI	CTRYAG	3 cut(s)	464, 516, 677
BfoI	RGCGCY	3 cut(s)	288, 322, 358
BfuAI	ACCTGC	2 cut(s)	509, 751
Bme1390I	CCNGG	1 cut(s)	627
Bme18I	GGWCC	1 cut(s)	336
BmgT120I	GGNCC	2 cut(s)	336, 636
BmiI	GGNNCC	6 cut(s)	280, 286, 338, 526, 538, 852
BmrFI	CCNGG	1 cut(s)	627
BmrI	ACTGGG	2 cut(s)	590, 945
BmsI	GCATC	3 cut(s)	393, 483, 908
BmuI	ACTGGG	2 cut(s)	590, 945
BpmI	CTGGAG	1 cut(s)	528
BpuEI	CTTGAG	3 cut(s)	16, 299, 470
BsaHI	GRCGYC	2 cut(s)	285, 366
BsaJI	CCNNGG	3 cut(s)	379, 625, 626
BsaXI	ACNNNNNCTCC	6 cut(s)	172, 202, 227, 257, 263, 293
Bsc4I	CCNNNNNNNGG	4 cut(s)	601, 626, 788, 811
Bse118I	RCCGGY	4 cut(s)	290, 527, 667, 832
Bse1I	ACTGG	2 cut(s)	596, 940
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	3 cut(s)	379, 625, 626
BseGI	GGATG	4 cut(s)	498, 742, 849, 946
BseLI	CCNNNNNNNGG	4 cut(s)	601, 626, 788, 811
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	2 cut(s)	596, 940
BseRI	GAGGAG	6 cut(s)	77, 129, 186, 189, 192, 235
BseSI	GKGCMC	1 cut(s)	853
BseYI	CCCAGC	1 cut(s)	342
BsgI	GTGCAG	2 cut(s)	599, 842
Bsh1236I	CGCG	1 cut(s)	444
BshFI	GGCC	3 cut(s)	435, 551, 637
BshNI	GGYRCC	4 cut(s)	284, 524, 536, 850
BsiHKAI	GWGCWC	2 cut(s)	69, 804
BsiSI	CCGG	6 cut(s)	282, 291, 528, 602, 668, 833
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	4 cut(s)	601, 626, 788, 811
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	3 cut(s)	435, 551, 637
Bsp1286I	GDGCHC	5 cut(s)	69, 281, 303, 804, 853
Bsp143I	GATC	2 cut(s)	100, 574
BspANI	GGCC	3 cut(s)	435, 551, 637
BspCNI	CTCAG	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	444
BspHI	TCATGA	1 cut(s)	420
BspLI	GGNNCC	6 cut(s)	280, 286, 338, 526, 538, 852
BspMAI	CTGCAG	3 cut(s)	468, 520, 681
BspMI	ACCTGC	2 cut(s)	509, 751
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	4 cut(s)	284, 524, 536, 850
BsrFI	RCCGGY	4 cut(s)	290, 527, 667, 832
BsrI	ACTGG	2 cut(s)	596, 940
BssAI	RCCGGY	4 cut(s)	290, 527, 667, 832
BssECI	CCNNGG	3 cut(s)	379, 625, 626
BssMI	GATC	2 cut(s)	100, 574
BssNI	GRCGYC	2 cut(s)	285, 366
Bst2UI	CCWGG	1 cut(s)	627
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	2 cut(s)	285, 366
BstAPI	GCANNNNNTGC	2 cut(s)	524, 655
BstC8I	GCNNGC	7 cut(s)	292, 303, 307, 457, 529, 544, 589
BstDEI	CTNAG	1 cut(s)	60
BstF5I	GGATG	4 cut(s)	498, 742, 849, 946
BstFNI	CGCG	1 cut(s)	444
BstH2I	RGCGCY	3 cut(s)	288, 322, 358
BstHHI	GCGC	3 cut(s)	287, 321, 357
BstKTI	GATC	2 cut(s)	103, 577
BstMBI	GATC	2 cut(s)	100, 574
BstNI	CCWGG	1 cut(s)	627
BstSCI	CCNGG	1 cut(s)	625
BstSFI	CTRYAG	3 cut(s)	464, 516, 677
BstSLI	GKGCMC	1 cut(s)	853
BstUI	CGCG	1 cut(s)	444
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	3 cut(s)	435, 551, 637
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	498, 742, 849, 946
BtsI	GCAGTG	1 cut(s)	738
BtsIMutI	CAGTG	1 cut(s)	738
BveI	ACCTGC	2 cut(s)	509, 751
Cac8I	GCNNGC	7 cut(s)	292, 303, 307, 457, 529, 544, 589
CciI	TCATGA	1 cut(s)	420
CfoI	GCGC	3 cut(s)	287, 321, 357
Cfr10I	RCCGGY	4 cut(s)	290, 527, 667, 832
Cfr13I	GGNCC	2 cut(s)	336, 636
CseI	GACGC	1 cut(s)	374
CviAII	CATG	2 cut(s)	70, 421
DdeI	CTNAG	1 cut(s)	60
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	2 cut(s)	102, 576
DpnII	GATC	2 cut(s)	100, 574
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	3 cut(s)	69, 281, 303
Eco47I	GGWCC	1 cut(s)	336
Eco47III	AGCGCT	1 cut(s)	356
Eco53kI	GAGCTC	1 cut(s)	67
Eco81I	CCTNAGG	1 cut(s)	60
EcoICRI	GAGCTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	625
EcoT22I	ATGCAT	1 cut(s)	901
EcoT38I	GRGCYC	3 cut(s)	69, 281, 303
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
FaeI	CATG	2 cut(s)	73, 424
FaiI	YATR	5 cut(s)	71, 410, 422, 840, 873
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	69, 420
FauI	CCCGC	7 cut(s)	229, 310, 314, 332, 449, 524, 627
FblI	GTMKAC	1 cut(s)	429
FokI	GGATG	3 cut(s)	505, 729, 856
FriOI	GRGCYC	3 cut(s)	69, 281, 303
GlaI	GCGC	3 cut(s)	286, 320, 356
GsaI	CCCAGC	1 cut(s)	346
GsuI	CTGGAG	1 cut(s)	528
HaeII	RGCGCY	3 cut(s)	288, 322, 358
HaeIII	GGCC	3 cut(s)	435, 551, 637
HapII	CCGG	6 cut(s)	282, 291, 528, 602, 668, 833
HgaI	GACGC	1 cut(s)	374
HhaI	GCGC	3 cut(s)	287, 321, 357
Hin1I	GRCGYC	2 cut(s)	285, 366
Hin1II	CATG	2 cut(s)	73, 424
Hin6I	GCGC	3 cut(s)	285, 319, 355
HinP1I	GCGC	3 cut(s)	285, 319, 355
HincII	GTYRAC	2 cut(s)	364, 430
HindII	GTYRAC	2 cut(s)	364, 430
HinfI	GANTC	3 cut(s)	17, 263, 887
HpaII	CCGG	6 cut(s)	282, 291, 528, 602, 668, 833
HphI	GGTGA	2 cut(s)	430, 686
Hpy166II	GTNNAC	2 cut(s)	364, 430
Hpy188I	TCNGA	1 cut(s)	646
Hpy188III	TCNNGA	6 cut(s)	59, 98, 334, 388, 421, 507
Hpy8I	GTNNAC	2 cut(s)	364, 430
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	2 cut(s)	63, 224
HpyCH4V	TGCA	9 cut(s)	415, 466, 496, 518, 616, 679, 725, 859, 899
HpyF3I	CTNAG	1 cut(s)	60
Hsp92I	GRCGYC	2 cut(s)	285, 366
Hsp92II	CATG	2 cut(s)	73, 424
HspAI	GCGC	3 cut(s)	285, 319, 355
KasI	GGCGCC	1 cut(s)	284
KroI	GCCGGC	2 cut(s)	290, 527
KroNI	GCCGGC	2 cut(s)	292, 529
Kzo9I	GATC	2 cut(s)	100, 574
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	4 cut(s)	64, 284, 351, 596
LweI	GCATC	3 cut(s)	393, 483, 908
MaeIII	GTNAC	1 cut(s)	825
MalI	GATC	2 cut(s)	102, 576
MboI	GATC	2 cut(s)	100, 574
MboII	GAAGA	3 cut(s)	20, 53, 56
MhlI	GDGCHC	5 cut(s)	69, 281, 303, 804, 853
MluCI	AATT	6 cut(s)	22, 208, 640, 720, 794, 862
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	26, 257
Mph1103I	ATGCAT	1 cut(s)	901
MreI	CGCCGGCG	1 cut(s)	290
MroNI	GCCGGC	2 cut(s)	290, 527
MroXI	GAANNNNTTC	1 cut(s)	26
MspA1I	CMGCKG	5 cut(s)	251, 269, 542, 728, 856
MspI	CCGG	6 cut(s)	282, 291, 528, 602, 668, 833
MspR9I	CCNGG	1 cut(s)	627
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	1 cut(s)	627
MvnI	CGCG	1 cut(s)	444
NaeI	GCCGGC	2 cut(s)	292, 529
NarI	GGCGCC	1 cut(s)	285
NdeII	GATC	2 cut(s)	100, 574
NgoMIV	GCCGGC	2 cut(s)	290, 527
NlaIII	CATG	2 cut(s)	73, 424
NlaIV	GGNNCC	6 cut(s)	280, 286, 338, 526, 538, 852
NmeAIII	GCCGAG	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	825
NsiI	ATGCAT	1 cut(s)	901
PagI	TCATGA	1 cut(s)	420
PaqCI	CACCTGC	2 cut(s)	509, 751
PasI	CCCWGGG	1 cut(s)	626
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	1 cut(s)	901
PdiI	GCCGGC	2 cut(s)	292, 529
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	887
PleI	GAGTC	2 cut(s)	25, 257
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	2 cut(s)	25, 257
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	625
PspFI	CCCAGC	1 cut(s)	342
PspGI	CCWGG	1 cut(s)	625
PspN4I	GGNNCC	6 cut(s)	280, 286, 338, 526, 538, 852
PspPI	GGNCC	2 cut(s)	336, 636
PstI	CTGCAG	3 cut(s)	468, 520, 681
SacI	GAGCTC	1 cut(s)	69
SalI	GTCGAC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	100, 574
Sau96I	GGNCC	2 cut(s)	336, 636
SchI	GAGTC	2 cut(s)	26, 257
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	5 cut(s)	69, 281, 303, 804, 853
SfaNI	GCATC	3 cut(s)	393, 483, 908
SfcI	CTRYAG	3 cut(s)	464, 516, 677
SfoI	GGCGCC	1 cut(s)	286
SgrAI	CRCCGGYG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	336
SmlI	CTYRAG	3 cut(s)	31, 314, 485
SmoI	CTYRAG	3 cut(s)	31, 314, 485
Sse9I	AATT	6 cut(s)	22, 208, 640, 720, 794, 862
SspDI	GGCGCC	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	1 cut(s)	625
TaqI	TCGA	2 cut(s)	20, 429
TasI	AATT	6 cut(s)	22, 208, 640, 720, 794, 862
TauI	GCSGC	5 cut(s)	290, 542, 554, 637, 731
TfiI	GAWTC	1 cut(s)	887
TscAI	CASTG	1 cut(s)	738
TseFI	GTSAC	1 cut(s)	825
Tsp45I	GTSAC	1 cut(s)	825
TspDTI	ATGAA	1 cut(s)	827
TspRI	CASTG	1 cut(s)	738
VpaK11BI	GGWCC	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	901

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.