Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0012989

Physical Location & Seq

Genomic Coordinates Forward (+)

12405071 .. 12406141

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1094000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGAGGGAAGATGATGAGTCCAATTGGTTCTCCAGATGGGAGGAAGAGCTGCCTACTCCCGACGAACTCATGCCCTTATCCCAAACCCTAATCACTCCTGATCTTGCCCTCGCCTTTGACATCTCCCACCAACACCCTCCTCCTCCCCATTCCCAATCCCAACCCCAACCTCAACCCCCCCACACACCCCCTCCCCCGCCTCCTCCTCCCAATTCCCTCCCTCCCGCTACCCCCACCCACCCCAACTCCTCCGCCGACTTCGCCGACTCCGCTGACTTGGGCTCCGGTGCCGCCGGCGATGAGCCCGCCCGCACCCTCAAGCGCCCCCGCCTCGTCTGGACCCCCCAGCTCCACAAGCGCTTCGTCGACGCCGTCGCCCACCTCGGCATCAAGAACGCCGTCCCCAAGACCATAATGCAGCTCATGAGTGTCGACGGCCTCACCCGCGAGAATGTTGCCAGCCATCTGCAGAAGTACCGTCTTTATCTCAAGCGGATGCAGGGCTTGTCTGGAGGTTCTGCTGGGGGTGCCGGCGCGGGTGCCGCTGGCTTGGCCGCCTCTGCCGATCCCGCCACTGACCATTTGTTCGCCAGCTCCCCAGTTCCAGCTCATTTCCTGCACTCGCACCCTGGGGGGCGGCCCAATTCCGAGCATTTCTTGCCGTTTGTGCCGGTGGCTCTGCAGCAGCACCACCATCACCAGCAGCAGCAGCAGCAGATTGCAGCGGCAGTGGCAGCCCATCCGCAGTATCACAGGCAGGTGGGGCATTTTGGGTCGCCACCAAATGGGCAATTCGAGCACCCATTCTTGGCGAGGCAGTCTTCACAGCCGGTTCATAGGATGGGGGCACCGCTGCACAATTCAGTGCCAGGCTATGTAGAGGACTTGGAATCAGCGAATGCAACTGGTGGCAGGAAAGTTCTTACTCTATTTCCAATTGGGGATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009888 GO:0009889 GO:0009933 GO:0009966 GO:0009987 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031537 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048583 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051193 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0098727 GO:0099402 GO:0140110 GO:1901401 GO:1901463 GO:1901700 GO:1903506 GO:1905392 GO:1905393 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

317

Amino Acids

34.12

Weight (kDa)

6.34

Isoelectric Point (pI)

57.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	111 - 160	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40970 AT3G10760 AT5G05090
fragaria_vesca	FvH4_6g25730
malus_domestica	MD12G1092500.v1.1 MD12G1094000.v1.1
prunus_persica	Prupe.7G027500_v2.0.a1
pyrus_communis	pycom12g07980
rosa_chinensis	RchiOBHm_Chr2g0125991
rosa_laevigata	RLG00000018885
rosa_multiflora	Rmu_sc0006201.1_g000002
rosa_roxburghii	Rroxscaffold_2G00117470
rosa_rugosa	Rorug02G0260200
rosa_samantha	Rh2AG318000 Rh2BG326400 Rh2DG344000 Rh2DG344300
rosa_wichuraiana	Rw2G025740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	748
Acc36I	ACCTGC	1 cut(s)	748
AccB1I	GGYRCC	4 cut(s)	287, 527, 539, 847
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccI	GTMKAC	2 cut(s)	366, 432
AccII	CGCG	2 cut(s)	447, 536
AclWI	GGATC	1 cut(s)	560
AcoI	YGGCCR	1 cut(s)	552
AcyI	GRCGYC	1 cut(s)	369
AfaI	GTAC	1 cut(s)	476
AfeI	AGCGCT	1 cut(s)	359
AfiI	CCNNNNNNNGG	2 cut(s)	785, 808
AjnI	CCWGG	2 cut(s)	628, 868
AluBI	AGCT	5 cut(s)	49, 349, 421, 594, 608
AluI	AGCT	5 cut(s)	49, 349, 421, 594, 608
Alw21I	GWGCWC	1 cut(s)	801
AlwI	GGATC	1 cut(s)	560
Aor51HI	AGCGCT	1 cut(s)	359
AoxI	GGCC	3 cut(s)	436, 552, 638
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AspLEI	GCGC	3 cut(s)	324, 360, 536
AspS9I	GGNCC	2 cut(s)	339, 639
AsuHPI	GGTGA	2 cut(s)	433, 689
AvaII	GGWCC	1 cut(s)	339
BaeGI	GKGCMC	1 cut(s)	850
BanI	GGYRCC	4 cut(s)	287, 527, 539, 847
BanII	GRGCYC	2 cut(s)	284, 306
BbsI	GAAGAC	1 cut(s)	813
Bbv12I	GWGCWC	1 cut(s)	801
BccI	CCATC	5 cut(s)	30, 471, 702, 747, 835
BceAI	ACGGC	4 cut(s)	356, 383, 451, 646
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	2 cut(s)	630, 870
BfmI	CTRYAG	2 cut(s)	467, 680
BfoI	RGCGCY	2 cut(s)	325, 361
BfuAI	ACCTGC	1 cut(s)	748
Bme1390I	CCNGG	2 cut(s)	630, 870
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	2 cut(s)	339, 639
BmiI	GGNNCC	6 cut(s)	283, 289, 341, 529, 541, 849
BmrFI	CCNGG	2 cut(s)	630, 870
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	2 cut(s)	396, 486
BmuI	ACTGGG	1 cut(s)	593
BpiI	GAAGAC	1 cut(s)	813
BpmI	CTGGAG	2 cut(s)	16, 531
BpuEI	CTTGAG	2 cut(s)	302, 473
BsaHI	GRCGYC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	382, 628, 629
BsaWI	WCCGGW	1 cut(s)	284
BsaXI	ACNNNNNCTCC	6 cut(s)	175, 205, 230, 260, 266, 296
Bsc4I	CCNNNNNNNGG	2 cut(s)	785, 808
Bse118I	RCCGGY	4 cut(s)	293, 530, 670, 829
Bse1I	ACTGG	2 cut(s)	599, 910
BseBI	CCWGG	2 cut(s)	630, 870
BseDI	CCNNGG	3 cut(s)	382, 628, 629
BseGI	GGATG	4 cut(s)	501, 739, 846, 949
BseLI	CCNNNNNNNGG	2 cut(s)	785, 808
BseNI	ACTGG	2 cut(s)	599, 910
BseRI	GAGGAG	5 cut(s)	129, 132, 192, 195, 238
BseSI	GKGCMC	1 cut(s)	850
BseYI	CCCAGC	2 cut(s)	345, 521
BsgI	GTGCAG	2 cut(s)	602, 839
Bsh1236I	CGCG	2 cut(s)	447, 536
BshFI	GGCC	3 cut(s)	438, 554, 640
BshNI	GGYRCC	4 cut(s)	287, 527, 539, 847
BsiHKAI	GWGCWC	1 cut(s)	801
BsiSI	CCGG	5 cut(s)	285, 294, 531, 671, 830
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	2 cut(s)	785, 808
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	3 cut(s)	438, 554, 640
Bsp1286I	GDGCHC	4 cut(s)	284, 306, 801, 850
Bsp143I	GATC	2 cut(s)	100, 565
BspANI	GGCC	3 cut(s)	438, 554, 640
BspFNI	CGCG	2 cut(s)	447, 536
BspHI	TCATGA	1 cut(s)	423
BspLI	GGNNCC	6 cut(s)	283, 289, 341, 529, 541, 849
BspMAI	CTGCAG	2 cut(s)	471, 684
BspMI	ACCTGC	1 cut(s)	748
BspPI	GGATC	1 cut(s)	560
BspQI	GCTCTTC	1 cut(s)	39
BspT107I	GGYRCC	4 cut(s)	287, 527, 539, 847
BsrFI	RCCGGY	4 cut(s)	293, 530, 670, 829
BsrI	ACTGG	2 cut(s)	599, 910
BssAI	RCCGGY	4 cut(s)	293, 530, 670, 829
BssECI	CCNNGG	3 cut(s)	382, 628, 629
BssMI	GATC	2 cut(s)	100, 565
BssNI	GRCGYC	1 cut(s)	369
Bst2UI	CCWGG	2 cut(s)	630, 870
Bst4CI	ACNGT	1 cut(s)	479
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	369
BstAPI	GCANNNNNTGC	1 cut(s)	658
BstC8I	GCNNGC	7 cut(s)	295, 306, 310, 460, 532, 547, 592
BstF5I	GGATG	4 cut(s)	501, 739, 846, 949
BstFNI	CGCG	2 cut(s)	447, 536
BstH2I	RGCGCY	2 cut(s)	325, 361
BstHHI	GCGC	3 cut(s)	324, 360, 536
BstKTI	GATC	2 cut(s)	103, 568
BstMBI	GATC	2 cut(s)	100, 565
BstNI	CCWGG	2 cut(s)	630, 870
BstSCI	CCNGG	2 cut(s)	628, 868
BstSFI	CTRYAG	2 cut(s)	467, 680
BstSLI	GKGCMC	1 cut(s)	850
BstUI	CGCG	2 cut(s)	447, 536
BstV2I	GAAGAC	1 cut(s)	813
BsuRI	GGCC	3 cut(s)	438, 554, 640
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	4 cut(s)	501, 739, 846, 949
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	3 cut(s)	573, 735, 870
BveI	ACCTGC	1 cut(s)	748
Cac8I	GCNNGC	7 cut(s)	295, 306, 310, 460, 532, 547, 592
CciI	TCATGA	1 cut(s)	423
CfoI	GCGC	3 cut(s)	324, 360, 536
Cfr10I	RCCGGY	4 cut(s)	293, 530, 670, 829
Cfr13I	GGNCC	2 cut(s)	339, 639
CseI	GACGC	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	2 cut(s)	70, 424
CviQI	GTAC	1 cut(s)	475
DpnI	GATC	2 cut(s)	102, 567
DpnII	GATC	2 cut(s)	100, 565
EaeI	YGGCCR	1 cut(s)	552
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	284, 306
Eco47I	GGWCC	1 cut(s)	339
Eco47III	AGCGCT	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	628, 868
EcoT38I	GRGCYC	2 cut(s)	284, 306
FaeI	CATG	2 cut(s)	73, 427
FaiI	YATR	5 cut(s)	71, 413, 425, 837, 876
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	2 cut(s)	69, 423
FauI	CCCGC	8 cut(s)	204, 232, 313, 317, 335, 452, 529, 577
FblI	GTMKAC	2 cut(s)	366, 432
FokI	GGATG	3 cut(s)	508, 726, 853
FriOI	GRGCYC	2 cut(s)	284, 306
GlaI	GCGC	3 cut(s)	323, 359, 535
GsaI	CCCAGC	2 cut(s)	349, 525
GsuI	CTGGAG	2 cut(s)	16, 531
HaeII	RGCGCY	2 cut(s)	325, 361
HaeIII	GGCC	3 cut(s)	438, 554, 640
HapII	CCGG	5 cut(s)	285, 294, 531, 671, 830
HgaI	GACGC	1 cut(s)	377
HhaI	GCGC	3 cut(s)	324, 360, 536
Hin1I	GRCGYC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	73, 427
Hin6I	GCGC	3 cut(s)	322, 358, 534
HinP1I	GCGC	3 cut(s)	322, 358, 534
HincII	GTYRAC	2 cut(s)	367, 433
HindII	GTYRAC	2 cut(s)	367, 433
HinfI	GANTC	3 cut(s)	17, 266, 890
HpaII	CCGG	5 cut(s)	285, 294, 531, 671, 830
HphI	GGTGA	2 cut(s)	433, 689
Hpy166II	GTNNAC	2 cut(s)	367, 433
Hpy188I	TCNGA	1 cut(s)	649
Hpy188III	TCNNGA	7 cut(s)	33, 59, 98, 337, 391, 424, 510
Hpy8I	GTNNAC	2 cut(s)	367, 433
Hpy99I	CGWCG	5 cut(s)	65, 368, 371, 377, 437
HpyCH4III	ACNGT	1 cut(s)	479
HpyCH4V	TGCA	8 cut(s)	418, 469, 499, 619, 682, 722, 856, 902
Hsp92I	GRCGYC	1 cut(s)	369
Hsp92II	CATG	2 cut(s)	73, 427
HspAI	GCGC	3 cut(s)	322, 358, 534
KroI	GCCGGC	2 cut(s)	293, 530
KroNI	GCCGGC	2 cut(s)	295, 532
Kzo9I	GATC	2 cut(s)	100, 565
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	3 cut(s)	287, 354, 599
LweI	GCATC	2 cut(s)	396, 486
MalI	GATC	2 cut(s)	102, 567
MboI	GATC	2 cut(s)	100, 565
MboII	GAAGA	3 cut(s)	20, 56, 813
MfeI	CAATTG	2 cut(s)	22, 936
MhlI	GDGCHC	4 cut(s)	284, 306, 801, 850
MluCI	AATT	6 cut(s)	22, 211, 643, 791, 859, 936
MlyI	GAGTC	2 cut(s)	26, 260
MreI	CGCCGGCG	1 cut(s)	293
MroNI	GCCGGC	2 cut(s)	293, 530
MspA1I	CMGCKG	4 cut(s)	272, 545, 725, 853
MspI	CCGG	5 cut(s)	285, 294, 531, 671, 830
MspR9I	CCNGG	2 cut(s)	630, 870
MunI	CAATTG	2 cut(s)	22, 936
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	2 cut(s)	630, 870
MvnI	CGCG	2 cut(s)	447, 536
NaeI	GCCGGC	2 cut(s)	295, 532
NdeII	GATC	2 cut(s)	100, 565
NgoMIV	GCCGGC	2 cut(s)	293, 530
NlaIII	CATG	2 cut(s)	73, 427
NlaIV	GGNNCC	6 cut(s)	283, 289, 341, 529, 541, 849
NmeAIII	GCCGAG	1 cut(s)	363
PagI	TCATGA	1 cut(s)	423
PaqCI	CACCTGC	1 cut(s)	748
PasI	CCCWGGG	1 cut(s)	629
PciSI	GCTCTTC	1 cut(s)	39
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PctI	GAATGC	1 cut(s)	904
PdiI	GCCGGC	2 cut(s)	295, 532
PfeI	GAWTC	1 cut(s)	890
PflFI	GACNNNGTC	1 cut(s)	371
PflMI	CCANNNNNTGG	1 cut(s)	785
PleI	GAGTC	2 cut(s)	25, 260
PpsI	GAGTC	2 cut(s)	25, 260
Psp6I	CCWGG	2 cut(s)	628, 868
PspFI	CCCAGC	2 cut(s)	345, 521
PspGI	CCWGG	2 cut(s)	628, 868
PspN4I	GGNNCC	6 cut(s)	283, 289, 341, 529, 541, 849
PspPI	GGNCC	2 cut(s)	339, 639
PstI	CTGCAG	2 cut(s)	471, 684
PsyI	GACNNNGTC	1 cut(s)	371
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
SalI	GTCGAC	2 cut(s)	365, 431
SapI	GCTCTTC	1 cut(s)	39
Sau3AI	GATC	2 cut(s)	100, 565
Sau96I	GGNCC	2 cut(s)	339, 639
SchI	GAGTC	2 cut(s)	26, 260
ScrFI	CCNGG	2 cut(s)	630, 870
SduI	GDGCHC	4 cut(s)	284, 306, 801, 850
SetI	ASST	9 cut(s)	51, 172, 351, 384, 423, 517, 596, 610, 762
SfaNI	GCATC	2 cut(s)	396, 486
SfcI	CTRYAG	2 cut(s)	467, 680
SgrAI	CRCCGGYG	1 cut(s)	293
SgrDI	CGTCGACG	1 cut(s)	365
SinI	GGWCC	1 cut(s)	339
SmlI	CTYRAG	2 cut(s)	317, 488
SmoI	CTYRAG	2 cut(s)	317, 488
Sse9I	AATT	6 cut(s)	22, 211, 643, 791, 859, 936
StyD4I	CCNGG	2 cut(s)	628, 868
TaaI	ACNGT	1 cut(s)	479
TaqI	TCGA	3 cut(s)	366, 432, 795
TasI	AATT	6 cut(s)	22, 211, 643, 791, 859, 936
TauI	GCSGC	5 cut(s)	293, 545, 557, 640, 728
TfiI	GAWTC	1 cut(s)	890
TscAI	CASTG	3 cut(s)	580, 735, 870
TspDTI	ATGAA	1 cut(s)	824
TspRI	CASTG	3 cut(s)	580, 735, 870
Tth111I	GACNNNGTC	1 cut(s)	371
Van91I	CCANNNNNTGG	1 cut(s)	785
VpaK11BI	GGWCC	1 cut(s)	339
XmiI	GTMKAC	2 cut(s)	366, 432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.