Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012167

Physical Location & Seq

Genomic Coordinates Reverse (-)

17113798 .. 17115047

Gene Structure 1250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G41010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGTGACTTCGGAGGGATTAGCAAGCGTTGATTCTTGGTTATATCGCCAAGGTTTCAACGTTGATTCATGGTTGCTTTCTGATACCTTCTCTCACGACAACGATTTGCTCGCAAGAGCTCTCCATACCACCGTCACAGCCCCTCATACTCTCACTCCTTCCTCTGCTTTCTTCGATTCCTCCGCTGTTTCTCACCCTTCTTCCACTAACACACTCTCCTCTACCGTCTCCGGTGCTTCTGATCCAGAAATCATCGGCGGAGGAGCTAAACGGAAACGTAACTGCCTTCTTACCGACGGTAAAGCCGCCAAGCGCCGCGCTCGTGCTTCCAAGAAATCTCAGACTACTTTCATAACGGCGGATCCGTCCAACTTTCGTCAGATGGTTCAGCAAGTGACTGGCGCCAAGTACATCGATGACTCTTCTTCCTTTGGTATTTTCGATCCGATTGTCAAGCCGGAGCCGCTTAGGTTCGTTAACAAACTGCCTTGTGGTCCTTCGGATCGATCCACGGCGGTTCCAATGCTCGACACATCAGCATTTTTGTCTAATCATCACCAGGAGAATCTCGCAGTGGGAAATGCTTTCTCCGGTAACAGCAGCAGTGTAGGATTACCGTCGGGGAAGCCAAGTGCAACGGCCGACCCCGGTGGTTCTGCCGTGGAGTTTGATAATTACCCAACATTTCCAACGCTTGAATCGTGGAAGGTTATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006970 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0010035 GO:0010337 GO:0010565 GO:0010817 GO:0019222 GO:0031323 GO:0032350 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0062012 GO:0065007 GO:0065008 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

238

Amino Acids

25.38

Weight (kDa)

6.58

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VQ	PF05678	113 - 136	2.5e-11	VQ motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41010 AT3G56880
fragaria_vesca	FvH4_6g07790
malus_domestica	MD04G1191900.v1.1
prunus_persica	Prupe.6G310500_v2.0.a1
pyrus_communis	pycom04g16940 pycom12g19130
rosa_chinensis	RchiOBHm_Chr3g0457501
rosa_laevigata	RLG00000025218
rosa_multiflora	Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii	Rroxscaffold_6G00421820
rosa_rugosa	Rorug03G0020500
rosa_samantha	Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana	Rw3G006970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccII	CGCG	1 cut(s)	318
AciI	CCGC	7 cut(s)	183, 258, 306, 316, 359, 464, 515
AclI	AACGTT	1 cut(s)	60
AclWI	GGATC	6 cut(s)	236, 356, 369, 437, 501, 510
AcoI	YGGCCR	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	410
AgsI	TTSAA	2 cut(s)	58, 698
AjnI	CCWGG	1 cut(s)	558
AluBI	AGCT	2 cut(s)	119, 266
AluI	AGCT	2 cut(s)	119, 266
Alw21I	GWGCWC	1 cut(s)	121
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	6 cut(s)	236, 356, 369, 437, 501, 510
AoxI	GGCC	1 cut(s)	639
ApeKI	GCWGC	1 cut(s)	600
AspLEI	GCGC	3 cut(s)	315, 320, 404
AspS9I	GGNCC	1 cut(s)	494
AsuC2I	CCSGG	1 cut(s)	648
AsuHPI	GGTGA	3 cut(s)	16, 185, 548
AvaII	GGWCC	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	361
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	121
BauI	CACGAG	1 cut(s)	321
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	1 cut(s)	612
BccI	CCATC	1 cut(s)	376
BceAI	ACGGC	4 cut(s)	372, 528, 644, 654
BciT130I	CCWGG	1 cut(s)	560
BcnI	CCSGG	1 cut(s)	648
BcoDI	GTCTC	1 cut(s)	232
BfoI	RGCGCY	2 cut(s)	316, 405
BisI	GCNGC	4 cut(s)	306, 316, 464, 601
BlsI	GCNGC	4 cut(s)	307, 317, 465, 602
Bme1390I	CCNGG	2 cut(s)	560, 648
Bme18I	GGWCC	1 cut(s)	494
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	4 cut(s)	363, 403, 462, 519
BmrFI	CCNGG	2 cut(s)	560, 648
Bpu10I	CCTNAGC	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	648
Bsa29I	ATCGAT	2 cut(s)	414, 505
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	4 cut(s)	49, 510, 646, 660
BsaWI	WCCGGW	2 cut(s)	230, 590
BsaXI	ACNNNNNCTCC	4 cut(s)	139, 169, 200, 230
Bse1I	ACTGG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	560
BseCI	ATCGAT	2 cut(s)	414, 505
BseDI	CCNNGG	4 cut(s)	49, 510, 646, 660
BseMII	CTCAG	1 cut(s)	353
BseNI	ACTGG	1 cut(s)	403
BseRI	GAGGAG	2 cut(s)	208, 276
BseX3I	CGGCCG	1 cut(s)	639
BseXI	GCAGC	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	318
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	641
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	2 cut(s)	414, 505
BsiEI	CGRYCG	1 cut(s)	642
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	4 cut(s)	231, 458, 591, 648
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	641
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	5 cut(s)	241, 361, 442, 502, 506
BspACI	CCGC	7 cut(s)	183, 258, 306, 316, 359, 464, 515
BspANI	GGCC	1 cut(s)	641
BspCNI	CTCAG	1 cut(s)	352
BspDI	ATCGAT	2 cut(s)	414, 505
BspFNI	CGCG	1 cut(s)	318
BspLI	GGNNCC	4 cut(s)	363, 403, 462, 519
BspPI	GGATC	6 cut(s)	236, 356, 369, 437, 501, 510
BspT107I	GGYRCC	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	4 cut(s)	49, 510, 646, 660
BssMI	GATC	5 cut(s)	241, 361, 442, 502, 506
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	321
BssT1I	CCWWGG	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	4 cut(s)	133, 226, 299, 618
Bst6I	CTCTTC	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	2 cut(s)	25, 111
BstDEI	CTNAG	2 cut(s)	339, 467
BstDSI	CCRYGG	2 cut(s)	510, 660
BstFNI	CGCG	1 cut(s)	318
BstH2I	RGCGCY	2 cut(s)	316, 405
BstHHI	GCGC	3 cut(s)	315, 320, 404
BstKTI	GATC	5 cut(s)	244, 364, 445, 505, 509
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	5 cut(s)	241, 361, 442, 502, 506
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	560
BstSCI	CCNGG	2 cut(s)	558, 646
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BstZI	CGGCCG	1 cut(s)	639
Bsu15I	ATCGAT	2 cut(s)	414, 505
BsuRI	GGCC	1 cut(s)	641
BsuTUI	ATCGAT	2 cut(s)	414, 505
BtgI	CCRYGG	2 cut(s)	510, 660
BtsI	GCAGTG	2 cut(s)	579, 610
BtsIMutI	CAGTG	2 cut(s)	579, 610
Cac8I	GCNNGC	2 cut(s)	25, 111
CfoI	GCGC	3 cut(s)	315, 320, 404
Cfr13I	GGNCC	1 cut(s)	494
ClaI	ATCGAT	2 cut(s)	414, 505
Csp6I	GTAC	1 cut(s)	409
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	8 cut(s)	119, 140, 266, 305, 457, 463, 628, 641
CviKI_1	RGCY	8 cut(s)	119, 140, 266, 305, 457, 463, 628, 641
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	339, 467
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	5 cut(s)	243, 363, 444, 504, 508
DpnII	GATC	5 cut(s)	241, 361, 442, 502, 506
EaeI	YGGCCR	1 cut(s)	639
EagI	CGGCCG	1 cut(s)	639
Eam1104I	CTCTTC	1 cut(s)	427
EarI	CTCTTC	1 cut(s)	427
EciI	GGCGGA	2 cut(s)	273, 374
Ecl136II	GAGCTC	1 cut(s)	119
EclXI	CGGCCG	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	121
Eco47I	GGWCC	1 cut(s)	494
Eco52I	CGGCCG	1 cut(s)	639
Eco53kI	GAGCTC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	119
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	1 cut(s)	49
EcoT38I	GRGCYC	1 cut(s)	121
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	232
FaeI	CATG	1 cut(s)	72
FaiI	YATR	6 cut(s)	43, 70, 126, 147, 353, 713
FatI	CATG	1 cut(s)	68
Fnu4HI	GCNGC	4 cut(s)	306, 316, 464, 601
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	4 cut(s)	306, 316, 464, 601
GlaI	GCGC	3 cut(s)	314, 319, 403
GluI	GCNGC	4 cut(s)	306, 316, 464, 601
HaeII	RGCGCY	2 cut(s)	316, 405
HaeIII	GGCC	1 cut(s)	641
HapII	CCGG	4 cut(s)	231, 458, 591, 648
HhaI	GCGC	3 cut(s)	315, 320, 404
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	1 cut(s)	72
Hin6I	GCGC	3 cut(s)	313, 318, 402
HinP1I	GCGC	3 cut(s)	313, 318, 402
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	6 cut(s)	32, 65, 176, 419, 565, 698
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	4 cut(s)	231, 458, 591, 648
HphI	GGTGA	3 cut(s)	16, 185, 548
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	7 cut(s)	13, 82, 241, 342, 381, 447, 502
Hpy188III	TCNNGA	2 cut(s)	95, 245
Hpy8I	GTNNAC	1 cut(s)	478
Hpy99I	CGWCG	2 cut(s)	299, 622
HpyAV	CCTTC	6 cut(s)	97, 168, 207, 296, 507, 700
HpyCH4III	ACNGT	4 cut(s)	133, 226, 299, 618
HpyCH4IV	ACGT	2 cut(s)	60, 277
HpyCH4V	TGCA	1 cut(s)	635
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	2 cut(s)	339, 467
HpySE526I	ACGT	2 cut(s)	60, 277
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	1 cut(s)	72
HspAI	GCGC	3 cut(s)	313, 318, 402
KasI	GGCGCC	1 cut(s)	401
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	241, 361, 442, 502, 506
LmnI	GCTCC	2 cut(s)	263, 460
LpnPI	CCDG	8 cut(s)	244, 258, 384, 471, 545, 572, 604, 661
Lsp1109I	GCAGC	1 cut(s)	612
MaeII	ACGT	2 cut(s)	60, 277
MaeIII	GTNAC	5 cut(s)	4, 133, 278, 394, 593
MalI	GATC	5 cut(s)	243, 363, 444, 504, 508
MboI	GATC	5 cut(s)	241, 361, 442, 502, 506
MboII	GAAGA	4 cut(s)	163, 192, 414, 417
MflI	RGATCY	1 cut(s)	361
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	673
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	393, 713
MnlI	CCTC	6 cut(s)	7, 153, 172, 190, 229, 254
MseI	TTAA	1 cut(s)	477
MspA1I	CMGCKG	1 cut(s)	185
MspI	CCGG	4 cut(s)	231, 458, 591, 648
MspR9I	CCNGG	2 cut(s)	560, 648
MteI	GCGCNGCGC	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	1 cut(s)	463
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	648
NdeII	GATC	5 cut(s)	241, 361, 442, 502, 506
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	4 cut(s)	363, 403, 462, 519
NmuCI	GTSAC	3 cut(s)	4, 133, 394
PcsI	WCGNNNNNNNCGW	2 cut(s)	362, 698
PfeI	GAWTC	5 cut(s)	32, 65, 176, 565, 698
PkrI	GCNGC	4 cut(s)	307, 317, 465, 602
PleI	GAGTC	1 cut(s)	413
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	413
Psp124BI	GAGCTC	1 cut(s)	121
Psp1406I	AACGTT	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	4 cut(s)	363, 403, 462, 519
PspPI	GGNCC	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	361
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	4 cut(s)	306, 316, 464, 601
Sau3AI	GATC	5 cut(s)	241, 361, 442, 502, 506
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	560, 648
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	8 cut(s)	55, 63, 89, 121, 268, 280, 473, 711
SfoI	GGCGCC	1 cut(s)	403
SinI	GGWCC	1 cut(s)	494
Sse9I	AATT	1 cut(s)	673
SsiI	CCGC	7 cut(s)	183, 258, 306, 316, 359, 464, 515
SspDI	GGCGCC	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	2 cut(s)	558, 646
StyI	CCWWGG	1 cut(s)	49
TaaI	ACNGT	4 cut(s)	133, 226, 299, 618
TaiI	ACGT	2 cut(s)	63, 280
TaqI	TCGA	5 cut(s)	174, 414, 441, 505, 528
TasI	AATT	1 cut(s)	673
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	3 cut(s)	308, 318, 466
TfiI	GAWTC	5 cut(s)	32, 65, 176, 565, 698
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TscAI	CASTG	2 cut(s)	579, 610
TseFI	GTSAC	3 cut(s)	4, 133, 394
TseI	GCWGC	1 cut(s)	600
Tsp45I	GTSAC	3 cut(s)	4, 133, 394
TspDTI	ATGAA	2 cut(s)	57, 340
TspGWI	ACGGA	2 cut(s)	286, 354
TspRI	CASTG	2 cut(s)	579, 610
VpaK11BI	GGWCC	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.