pycom12g19130

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0012167
Physical Location & Seq
Reverse (-)
21073383 .. 21073961
579 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g19130.1

Sequence Viewer

Length: 579 bp
ATGGCGTCGTCGGAAGACGTGGGGAGCATGATGGAGCCGTGGGCTTTCAGGCCCAACACCTTCGCGGACTCCTGCATCTCCGACGCCTTCGCTCGTGACACCAAAACCCTCACCATGGCCCTCCAGAAGTCCATCTCCAGCAACCCGGAGCTGCTCGATTTTTCCTCTGACGATTTGTTCATGCCGTTTCTCAACACCATCTTCCAAACACCCGAGACAGCACCCACCCCCACCGTTTCTGGACTTTCCGGCTCGGACGACCTCGAGTCCGTGGCCGCACCGCTGAAAAAGCAGCAGAGAAGCGTGATTCCGGTGGCGCATGGCGGTGGTAAGGTTTCGAAACGGAAGTCGCGCGCGTCGAAACGGTCCCAGACGACTTTCATCAACGCGGACCCGAGCAACTTCCGACAGATGGTGCAACAGGTGACCGGAGTCAGATTCGGTAACGGACAGGTCACTATGCAGTCGGTTCTGAAGCCGGAGCCACACAGACCCGGTAGCCTGTTGCCCGGAGGGGTTGGCGTCTGCATGCCGACACTCGATACGTCGGCGTATCTTTTGGATCGATCACAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

193

Amino Acids

20.7

Weight (kDa)

7.79

Isoelectric Point (pI)

51.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 122 - 144 9.9e-11 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 65, 352, 354, 356, 389
AciI CCGC 5 cut(s) 65, 276, 281, 324, 389
AclWI GGATC 1 cut(s) 570
AcoI YGGCCR 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 494
AcyI GRCGYC 3 cut(s) 5, 84, 522
AfiI CCNNNNNNNGG 2 cut(s) 115, 412
AhdI GACNNNNNGTC 1 cut(s) 265
AjiI CACGTC 1 cut(s) 19
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 1 cut(s) 570
Ama87I CYCGRG 3 cut(s) 212, 263, 394
AoxI GGCC 3 cut(s) 50, 117, 273
ApeKI GCWGC 2 cut(s) 151, 292
ArsI GACNNNNNNTTYG 2 cut(s) 332, 364
AspLEI GCGC 3 cut(s) 319, 354, 356
AspS9I GGNCC 4 cut(s) 51, 118, 366, 391
AsuC2I CCSGG 3 cut(s) 146, 495, 510
AsuHPI GGTGA 2 cut(s) 103, 436
AsuII TTCGAA 1 cut(s) 338
AvaI CYCGRG 3 cut(s) 212, 263, 394
AvaII GGWCC 2 cut(s) 366, 391
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 138, 304
BccI CCATC 4 cut(s) 25, 140, 206, 406
BceAI ACGGC 2 cut(s) 22, 169
BcnI CCSGG 3 cut(s) 146, 495, 510
BcoDI GTCTC 1 cut(s) 209
BisI GCNGC 3 cut(s) 152, 276, 293
BlsI GCNGC 3 cut(s) 153, 277, 294
Bme1390I CCNGG 3 cut(s) 146, 495, 510
Bme18I GGWCC 2 cut(s) 366, 391
BmeRI GACNNNNNGTC 1 cut(s) 265
BmeT110I CYCGRG 3 cut(s) 212, 263, 394
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 4 cut(s) 51, 118, 366, 391
BmiI GGNNCC 4 cut(s) 36, 368, 393, 483
BmrFI CCNGG 3 cut(s) 146, 495, 510
BmsI GCATC 1 cut(s) 84
BoxI GACNNNNGTC 1 cut(s) 431
BpiI GAAGAC 1 cut(s) 21
BpmI CTGGAG 2 cut(s) 107, 121
Bpu14I TTCGAA 1 cut(s) 338
BpuMI CCSGG 3 cut(s) 146, 495, 510
Bsa29I ATCGAT 1 cut(s) 565
BsaBI GATNNNNATC 1 cut(s) 571
BsaHI GRCGYC 3 cut(s) 5, 84, 522
BsaJI CCNNGG 3 cut(s) 38, 114, 270
BsaWI WCCGGW 2 cut(s) 310, 428
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 412
Bse8I GATNNNNATC 1 cut(s) 571
BseCI ATCGAT 1 cut(s) 565
BseDI CCNNGG 3 cut(s) 38, 114, 270
BseJI GATNNNNATC 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 115, 412
BsePI GCGCGC 1 cut(s) 352
BseXI GCAGC 2 cut(s) 138, 304
Bsh1236I CGCG 5 cut(s) 65, 352, 354, 356, 389
BshFI GGCC 3 cut(s) 52, 119, 275
BshVI ATCGAT 1 cut(s) 565
BsiHKCI CYCGRG 3 cut(s) 212, 263, 394
BsiSI CCGG 7 cut(s) 146, 249, 311, 429, 479, 495, 510
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 2 cut(s) 115, 412
BsmAI GTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 3 cut(s) 52, 119, 275
BsoBI CYCGRG 3 cut(s) 212, 263, 394
Bsp119I TTCGAA 1 cut(s) 338
Bsp143I GATC 2 cut(s) 562, 566
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 5 cut(s) 65, 276, 281, 324, 389
BspANI GGCC 3 cut(s) 52, 119, 275
BspDI ATCGAT 1 cut(s) 565
BspFNI CGCG 5 cut(s) 65, 352, 354, 356, 389
BspHI TCATGA 1 cut(s) 575
BspLI GGNNCC 4 cut(s) 36, 368, 393, 483
BspPI GGATC 1 cut(s) 570
BspT104I TTCGAA 1 cut(s) 338
BssECI CCNNGG 3 cut(s) 38, 114, 270
BssHII GCGCGC 1 cut(s) 352
BssMI GATC 2 cut(s) 562, 566
BssNI GRCGYC 3 cut(s) 5, 84, 522
BssSI CACGAG 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 2 cut(s) 235, 366
BstACI GRCGYC 3 cut(s) 5, 84, 522
BstBI TTCGAA 1 cut(s) 338
BstC8I GCNNGC 2 cut(s) 354, 530
BstDSI CCRYGG 3 cut(s) 38, 114, 270
BstEII GGTNACC 1 cut(s) 424
BstFNI CGCG 5 cut(s) 65, 352, 354, 356, 389
BstHHI GCGC 3 cut(s) 319, 354, 356
BstKTI GATC 2 cut(s) 565, 569
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 2 cut(s) 562, 566
BstMWI GCNNNNNNNGC 1 cut(s) 289
BstNSI RCATGY 1 cut(s) 532
BstPAI GACNNNNGTC 1 cut(s) 431
BstPI GGTNACC 1 cut(s) 424
BstSCI CCNGG 3 cut(s) 144, 493, 508
BstUI CGCG 5 cut(s) 65, 352, 354, 356, 389
BstV1I GCAGC 2 cut(s) 138, 304
BstV2I GAAGAC 1 cut(s) 21
Bsu15I ATCGAT 1 cut(s) 565
BsuRI GGCC 3 cut(s) 52, 119, 275
BsuTUI ATCGAT 1 cut(s) 565
BtgI CCRYGG 3 cut(s) 38, 114, 270
BtrI CACGTC 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 354, 530
CciI TCATGA 1 cut(s) 575
CfoI GCGC 3 cut(s) 319, 354, 356
Cfr13I GGNCC 4 cut(s) 51, 118, 366, 391
ClaI ATCGAT 1 cut(s) 565
CseI GACGC 3 cut(s) 92, 345, 511
CviAII CATG 6 cut(s) 28, 115, 181, 320, 529, 576
DpnI GATC 2 cut(s) 564, 568
DpnII GATC 2 cut(s) 562, 566
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 273
Eam1105I GACNNNNNGTC 1 cut(s) 265
Eco130I CCWWGG 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 366, 391
Eco57I CTGAAG 1 cut(s) 494
Eco88I CYCGRG 3 cut(s) 212, 263, 394
Eco91I GGTNACC 1 cut(s) 424
EcoO65I GGTNACC 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 6 cut(s) 31, 118, 184, 323, 532, 579
FaiI YATR 7 cut(s) 29, 116, 182, 321, 461, 530, 577
FaqI GGGAC 1 cut(s) 352
FatI CATG 6 cut(s) 27, 114, 180, 319, 528, 575
Fnu4HI GCNGC 3 cut(s) 152, 276, 293
Fsp4HI GCNGC 3 cut(s) 152, 276, 293
GlaI GCGC 3 cut(s) 318, 353, 355
GluI GCNGC 3 cut(s) 152, 276, 293
GsuI CTGGAG 2 cut(s) 107, 121
HaeIII GGCC 3 cut(s) 52, 119, 275
HapII CCGG 7 cut(s) 146, 249, 311, 429, 479, 495, 510
HgaI GACGC 3 cut(s) 92, 345, 511
HhaI GCGC 3 cut(s) 319, 354, 356
Hin1I GRCGYC 3 cut(s) 5, 84, 522
Hin1II CATG 6 cut(s) 31, 118, 184, 323, 532, 579
Hin6I GCGC 3 cut(s) 317, 352, 354
HinP1I GCGC 3 cut(s) 317, 352, 354
HinfI GANTC 5 cut(s) 68, 266, 307, 432, 438
HpaII CCGG 7 cut(s) 146, 249, 311, 429, 479, 495, 510
HphI GGTGA 2 cut(s) 103, 436
Hpy188I TCNGA 7 cut(s) 13, 82, 169, 256, 407, 437, 474
Hpy188III TCNNGA 4 cut(s) 95, 124, 240, 576
Hpy99I CGWCG 5 cut(s) 10, 13, 86, 361, 550
HpyAV CCTTC 2 cut(s) 70, 97
HpyCH4III ACNGT 2 cut(s) 235, 366
HpyCH4IV ACGT 2 cut(s) 18, 545
HpyCH4V TGCA 4 cut(s) 75, 418, 463, 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 289
HpySE526I ACGT 2 cut(s) 18, 545
Hsp92I GRCGYC 3 cut(s) 5, 84, 522
Hsp92II CATG 6 cut(s) 31, 118, 184, 323, 532, 579
HspAI GCGC 3 cut(s) 317, 352, 354
Kzo9I GATC 2 cut(s) 562, 566
LmnI GCTCC 4 cut(s) 24, 34, 148, 481
Lsp1109I GCAGC 2 cut(s) 138, 304
LweI GCATC 1 cut(s) 84
MaeII ACGT 2 cut(s) 18, 545
MaeIII GTNAC 4 cut(s) 95, 424, 443, 454
MalI GATC 2 cut(s) 564, 568
MauBI CGCGCGCG 1 cut(s) 352
MboI GATC 2 cut(s) 562, 566
MboII GAAGA 2 cut(s) 26, 193
MlyI GAGTC 3 cut(s) 62, 275, 441
MmeI TCCRAC 2 cut(s) 105, 430
MnlI CCTC 5 cut(s) 119, 131, 175, 272, 506
MslI CAYNNNNRTG 2 cut(s) 324, 574
MspA1I CMGCKG 1 cut(s) 283
MspI CCGG 7 cut(s) 146, 249, 311, 429, 479, 495, 510
MspR9I CCNGG 3 cut(s) 146, 495, 510
MvnI CGCG 5 cut(s) 65, 352, 354, 356, 389
MwoI GCNNNNNNNGC 1 cut(s) 289
NciI CCSGG 3 cut(s) 146, 495, 510
NcoI CCATGG 1 cut(s) 114
NdeII GATC 2 cut(s) 562, 566
NlaIII CATG 6 cut(s) 31, 118, 184, 323, 532, 579
NlaIV GGNNCC 4 cut(s) 36, 368, 393, 483
NmuCI GTSAC 3 cut(s) 95, 424, 454
NspI RCATGY 1 cut(s) 532
NspV TTCGAA 1 cut(s) 338
PaeI GCATGC 1 cut(s) 532
PaeR7I CTCGAG 1 cut(s) 263
PagI TCATGA 1 cut(s) 575
PauI GCGCGC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 356
PfeI GAWTC 2 cut(s) 307, 438
PkrI GCNGC 3 cut(s) 153, 277, 294
PleI GAGTC 3 cut(s) 62, 274, 440
PpsI GAGTC 3 cut(s) 62, 274, 440
PshAI GACNNNNGTC 1 cut(s) 431
PspEI GGTNACC 1 cut(s) 424
PspN4I GGNNCC 4 cut(s) 36, 368, 393, 483
PspPI GGNCC 4 cut(s) 51, 118, 366, 391
PspXI VCTCGAGB 1 cut(s) 263
PteI GCGCGC 1 cut(s) 352
RseI CAYNNNNRTG 2 cut(s) 324, 574
SatI GCNGC 3 cut(s) 152, 276, 293
Sau3AI GATC 2 cut(s) 562, 566
Sau96I GGNCC 4 cut(s) 51, 118, 366, 391
SchI GAGTC 3 cut(s) 62, 275, 441
ScrFI CCNGG 3 cut(s) 146, 495, 510
SetI ASST 8 cut(s) 21, 62, 153, 264, 336, 426, 456, 548
SfaNI GCATC 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 263
SfuI TTCGAA 1 cut(s) 338
SinI GGWCC 2 cut(s) 366, 391
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 2 cut(s) 324, 574
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
SphI GCATGC 1 cut(s) 532
SsiI CCGC 5 cut(s) 65, 276, 281, 324, 389
StyD4I CCNGG 3 cut(s) 144, 493, 508
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 235, 366
TaiI ACGT 2 cut(s) 21, 548
TaqI TCGA 6 cut(s) 156, 264, 338, 359, 540, 565
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 2 cut(s) 307, 438
TseFI GTSAC 3 cut(s) 95, 424, 454
TseI GCWGC 2 cut(s) 151, 292
Tsp45I GTSAC 3 cut(s) 95, 424, 454
TspDTI ATGAA 2 cut(s) 169, 370
TspGWI ACGGA 3 cut(s) 259, 358, 462
VpaK11BI GGWCC 2 cut(s) 366, 391
XceI RCATGY 1 cut(s) 532
XhoI CTCGAG 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.