MD04G1191900.v1.1

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012167
Physical Location & Seq
Reverse (-)
28119236 .. 28120662
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1191900.v1.1.491

Sequence Viewer

Length: 780 bp
ATGGCGTCGTCAGAGAACGTTGCGAGCATGATGGAGCCGTGGGCTTTCAGGCCCAACACCTTCGCCGACTCCTGGATCTCCGACGCCTTTTCCCGCGACACCAAAACCCTCACCATGGCGCTCCAGAAGTCCCTCTCCGGAAACATCCCGGAGCCGCTTGATTCTTCCTCCGCCGATTTTTTCATGCCTTTTCTCAACACCGTCGTTCAAACACCCGAAACGGCCCCCACCCCCACCGTTTCGGGACTCTCCGGCTCGGACGATTTGGATTCGGCTGCCGCTCCGCTTAAACGCCAGCAGAGAAACGCGATTCCGGTGGCGAAAGGTAGCGGTAAGGTTTCGAAACGCAAGTCTCGCGCGTCGAAACGGTCCCAGACTACTTTCATCACGGCGGACCCGAGCAACTTCCGACAGATGGTGCAACAGGTGACCGGCGTAAGATTCGGTAACGGACAAGTCACTATGCCGTCGGTTCTGAAGCCGGAGCCACAGAGACCCGGTAGCCGGTTGGCCGGTGGTGTCGGCCTCTGCATGCCGACCCTCGATACTTCTGCGTATCTTTTGGATCAGCCCAATCAAGAGCCGCAGCTGGCGGGCCCCATTTCAACTAGGATAGCTACTGGGCCTGGGCCCAACACCACGTTGACCGGGTCCGGCCCAGTGTCATTCGGGGCGACGGGTGGCGTCGACGTCGCTCCTGGCGGTGGCGTTTCGTCTGGGGGATTAGGTTTTGACTCGTTCTCGTGCTTTCCGACTTTGGAGTCGTGGAAGGTCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

260

Amino Acids

27.11

Weight (kDa)

8.62

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 123 - 145 3.3e-10 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 760
AatII GACGTC 1 cut(s) 693
AccBSI CCGCTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 687
AccII CGCG 4 cut(s) 96, 308, 357, 359
AccIII TCCGGA 1 cut(s) 137
AclI AACGTT 1 cut(s) 18
AclWI GGATC 2 cut(s) 83, 573
AcoI YGGCCR 1 cut(s) 510
AcuI CTGAAG 1 cut(s) 497
AcyI GRCGYC 4 cut(s) 5, 84, 684, 690
AfiI CCNNNNNNNGG 5 cut(s) 72, 115, 415, 504, 704
AgsI TTSAA 2 cut(s) 209, 606
AjnI CCWGG 3 cut(s) 71, 625, 697
AluBI AGCT 2 cut(s) 589, 617
AluI AGCT 2 cut(s) 589, 617
Alw26I GTCTC 2 cut(s) 357, 487
AlwI GGATC 2 cut(s) 83, 573
Ama87I CYCGRG 1 cut(s) 397
Aor13HI TCCGGA 1 cut(s) 137
AoxI GGCC 8 cut(s) 50, 222, 510, 523, 595, 623, 629, 655
ApaI GGGCCC 2 cut(s) 599, 633
ApeKI GCWGC 2 cut(s) 275, 586
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AspLEI GCGC 2 cut(s) 121, 359
AsuC2I CCSGG 3 cut(s) 149, 498, 649
AsuHPI GGTGA 2 cut(s) 103, 439
AsuII TTCGAA 1 cut(s) 341
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 3 cut(s) 369, 394, 651
BaeGI GKGCMC 2 cut(s) 599, 633
BanII GRGCYC 2 cut(s) 599, 633
BauI CACGAG 1 cut(s) 742
BbvI GCAGC 2 cut(s) 262, 598
BccI CCATC 2 cut(s) 25, 409
BceAI ACGGC 4 cut(s) 22, 237, 405, 451
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BciT130I CCWGG 3 cut(s) 73, 627, 699
BcnI CCSGG 3 cut(s) 149, 498, 649
BcoDI GTCTC 2 cut(s) 357, 487
BfaI CTAG 1 cut(s) 609
BfoI RGCGCY 1 cut(s) 122
BisI GCNGC 5 cut(s) 155, 276, 279, 584, 587
BlsI GCNGC 5 cut(s) 156, 277, 280, 585, 588
Bme1390I CCNGG 6 cut(s) 73, 149, 498, 627, 649, 699
Bme18I GGWCC 3 cut(s) 369, 394, 651
BmeT110I CYCGRG 1 cut(s) 397
BmrFI CCNGG 6 cut(s) 73, 149, 498, 627, 649, 699
BmrI ACTGGG 2 cut(s) 630, 653
BmuI ACTGGG 2 cut(s) 630, 653
BpmI CTGGAG 1 cut(s) 107
Bpu14I TTCGAA 1 cut(s) 341
BpuMI CCSGG 3 cut(s) 149, 498, 649
BsaHI GRCGYC 4 cut(s) 5, 84, 684, 690
BsaI GGTCTC 1 cut(s) 487
BsaJI CCNNGG 3 cut(s) 38, 114, 626
BsaWI WCCGGW 2 cut(s) 137, 313
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 115, 415, 504, 704
Bse118I RCCGGY 3 cut(s) 431, 504, 512
Bse1I ACTGG 2 cut(s) 625, 659
BseAI TCCGGA 1 cut(s) 137
BseBI CCWGG 3 cut(s) 73, 627, 699
BseDI CCNNGG 3 cut(s) 38, 114, 626
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 5 cut(s) 72, 115, 415, 504, 704
BseNI ACTGG 2 cut(s) 625, 659
BseSI GKGCMC 2 cut(s) 599, 633
BseXI GCAGC 2 cut(s) 262, 598
Bsh1236I CGCG 4 cut(s) 96, 308, 357, 359
BshFI GGCC 8 cut(s) 52, 224, 512, 525, 597, 625, 631, 657
BsiHKCI CYCGRG 1 cut(s) 397
BslFI GGGAC 3 cut(s) 115, 258, 355
BslI CCNNNNNNNGG 5 cut(s) 72, 115, 415, 504, 704
BsmAI GTCTC 2 cut(s) 357, 487
BsmFI GGGAC 3 cut(s) 115, 258, 355
BsnI GGCC 8 cut(s) 52, 224, 512, 525, 597, 625, 631, 657
Bso31I GGTCTC 1 cut(s) 487
BsoBI CYCGRG 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 341
Bsp120I GGGCCC 2 cut(s) 595, 629
Bsp1286I GDGCHC 2 cut(s) 599, 633
Bsp13I TCCGGA 1 cut(s) 137
Bsp143I GATC 2 cut(s) 75, 565
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 8 cut(s) 52, 224, 512, 525, 597, 625, 631, 657
BspEI TCCGGA 1 cut(s) 137
BspFNI CGCG 4 cut(s) 96, 308, 357, 359
BspPI GGATC 2 cut(s) 83, 573
BspT104I TTCGAA 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 487
BsrBI CCGCTC 1 cut(s) 281
BsrFI RCCGGY 3 cut(s) 431, 504, 512
BsrI ACTGG 2 cut(s) 625, 659
BssAI RCCGGY 3 cut(s) 431, 504, 512
BssECI CCNNGG 3 cut(s) 38, 114, 626
BssMI GATC 2 cut(s) 75, 565
BssNI GRCGYC 4 cut(s) 5, 84, 684, 690
BssSI CACGAG 1 cut(s) 742
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 742
Bst2UI CCWGG 3 cut(s) 73, 627, 699
Bst4CI ACNGT 3 cut(s) 202, 238, 369
BstACI GRCGYC 4 cut(s) 5, 84, 684, 690
BstBI TTCGAA 1 cut(s) 341
BstC8I GCNNGC 5 cut(s) 25, 296, 533, 591, 595
BstDSI CCRYGG 2 cut(s) 38, 114
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 4 cut(s) 96, 308, 357, 359
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 2 cut(s) 121, 359
BstKTI GATC 2 cut(s) 78, 568
BstMAI GTCTC 2 cut(s) 357, 487
BstMBI GATC 2 cut(s) 75, 565
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNI CCWGG 3 cut(s) 73, 627, 699
BstNSI RCATGY 1 cut(s) 535
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 6 cut(s) 71, 147, 496, 625, 647, 697
BstSLI GKGCMC 2 cut(s) 599, 633
BstUI CGCG 4 cut(s) 96, 308, 357, 359
BstV1I GCAGC 2 cut(s) 262, 598
BstX2I RGATCY 1 cut(s) 75
BstYI RGATCY 1 cut(s) 75
BsuRI GGCC 8 cut(s) 52, 224, 512, 525, 597, 625, 631, 657
BtgI CCRYGG 2 cut(s) 38, 114
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 666
Cac8I GCNNGC 5 cut(s) 25, 296, 533, 591, 595
CfoI GCGC 2 cut(s) 121, 359
Cfr10I RCCGGY 3 cut(s) 431, 504, 512
CseI GACGC 3 cut(s) 92, 348, 673
CviAII CATG 5 cut(s) 28, 115, 184, 532, 775
DpnI GATC 2 cut(s) 77, 567
DpnII GATC 2 cut(s) 75, 565
DrdI GACNNNNNNGTC 1 cut(s) 760
DseDI GACNNNNNNGTC 1 cut(s) 760
EaeI YGGCCR 1 cut(s) 510
EciI GGCGGA 2 cut(s) 160, 407
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 2 cut(s) 599, 633
Eco31I GGTCTC 1 cut(s) 487
Eco47I GGWCC 3 cut(s) 369, 394, 651
Eco57I CTGAAG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 397
Eco91I GGTNACC 1 cut(s) 427
EcoO109I RGGNCCY 1 cut(s) 596
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 3 cut(s) 71, 625, 697
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 599, 633
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 31, 118, 187, 535, 778
FaiI YATR 6 cut(s) 29, 116, 185, 464, 533, 776
FaqI GGGAC 3 cut(s) 115, 258, 355
FatI CATG 5 cut(s) 27, 114, 183, 531, 774
FauI CCCGC 2 cut(s) 101, 586
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 5 cut(s) 155, 276, 279, 584, 587
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 2 cut(s) 599, 633
Fsp4HI GCNGC 5 cut(s) 155, 276, 279, 584, 587
FspBI CTAG 1 cut(s) 609
GlaI GCGC 2 cut(s) 120, 358
GluI GCNGC 5 cut(s) 155, 276, 279, 584, 587
GsuI CTGGAG 1 cut(s) 107
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 8 cut(s) 52, 224, 512, 525, 597, 625, 631, 657
HgaI GACGC 3 cut(s) 92, 348, 673
HhaI GCGC 2 cut(s) 121, 359
Hin1I GRCGYC 4 cut(s) 5, 84, 684, 690
Hin1II CATG 5 cut(s) 31, 118, 187, 535, 778
Hin6I GCGC 2 cut(s) 119, 357
HinP1I GCGC 2 cut(s) 119, 357
HincII GTYRAC 2 cut(s) 645, 688
HindII GTYRAC 2 cut(s) 645, 688
HinfI GANTC 8 cut(s) 68, 161, 246, 269, 310, 441, 734, 761
HphI GGTGA 2 cut(s) 103, 439
Hpy166II GTNNAC 2 cut(s) 645, 688
Hpy188I TCNGA 6 cut(s) 13, 82, 259, 410, 477, 753
Hpy188III TCNNGA 4 cut(s) 124, 138, 243, 578
Hpy8I GTNNAC 2 cut(s) 645, 688
Hpy99I CGWCG 9 cut(s) 10, 86, 206, 364, 472, 679, 689, 692, 695
HpyAV CCTTC 2 cut(s) 70, 763
HpyCH4III ACNGT 3 cut(s) 202, 238, 369
HpyCH4IV ACGT 3 cut(s) 18, 641, 690
HpyCH4V TGCA 2 cut(s) 421, 531
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpySE526I ACGT 3 cut(s) 18, 641, 690
Hsp92I GRCGYC 4 cut(s) 5, 84, 684, 690
Hsp92II CATG 5 cut(s) 31, 118, 187, 535, 778
HspAI GCGC 2 cut(s) 119, 357
Kpn2I TCCGGA 1 cut(s) 137
Kzo9I GATC 2 cut(s) 75, 565
LmnI GCTCC 6 cut(s) 34, 126, 151, 286, 484, 700
Lsp1109I GCAGC 2 cut(s) 262, 598
MaeI CTAG 1 cut(s) 609
MaeII ACGT 3 cut(s) 18, 641, 690
MaeIII GTNAC 3 cut(s) 427, 446, 457
MalI GATC 2 cut(s) 77, 567
MbiI CCGCTC 1 cut(s) 281
MboI GATC 2 cut(s) 75, 565
MboII GAAGA 1 cut(s) 156
MflI RGATCY 1 cut(s) 75
MhlI GDGCHC 2 cut(s) 599, 633
MlyI GAGTC 4 cut(s) 62, 240, 728, 770
MmeI TCCRAC 3 cut(s) 105, 433, 776
MnlI CCTC 5 cut(s) 119, 143, 178, 536, 551
MroI TCCGGA 1 cut(s) 137
MseI TTAA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 589
MspR9I CCNGG 6 cut(s) 73, 149, 498, 627, 649, 699
MvaI CCWGG 3 cut(s) 73, 627, 699
MvnI CGCG 4 cut(s) 96, 308, 357, 359
MwoI GCNNNNNNNGC 1 cut(s) 354
NciI CCSGG 3 cut(s) 149, 498, 649
NcoI CCATGG 1 cut(s) 114
NdeII GATC 2 cut(s) 75, 565
NlaIII CATG 5 cut(s) 31, 118, 187, 535, 778
NmuCI GTSAC 2 cut(s) 427, 457
NspI RCATGY 1 cut(s) 535
NspV TTCGAA 1 cut(s) 341
PaeI GCATGC 1 cut(s) 535
PcsI WCGNNNNNNNCGW 2 cut(s) 395, 749
PfeI GAWTC 4 cut(s) 161, 269, 310, 441
PflFI GACNNNGTC 1 cut(s) 649
PfoI TCCNGGA 2 cut(s) 71, 147
PkrI GCNGC 5 cut(s) 156, 277, 280, 585, 588
PleI GAGTC 4 cut(s) 62, 240, 728, 769
PpsI GAGTC 4 cut(s) 62, 240, 728, 769
Psp1406I AACGTT 1 cut(s) 18
Psp6I CCWGG 3 cut(s) 71, 625, 697
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 3 cut(s) 71, 625, 697
PspOMI GGGCCC 2 cut(s) 595, 629
PsuI RGATCY 1 cut(s) 75
PsyI GACNNNGTC 1 cut(s) 649
PvuII CAGCTG 1 cut(s) 589
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 5 cut(s) 155, 276, 279, 584, 587
Sau3AI GATC 2 cut(s) 75, 565
SchI GAGTC 4 cut(s) 62, 240, 728, 770
ScrFI CCNGG 6 cut(s) 73, 149, 498, 627, 649, 699
SduI GDGCHC 2 cut(s) 599, 633
SfuI TTCGAA 1 cut(s) 341
SgrDI CGTCGACG 1 cut(s) 686
SinI GGWCC 3 cut(s) 369, 394, 651
SphI GCATGC 1 cut(s) 535
SspMI CTAG 1 cut(s) 609
StyD4I CCNGG 6 cut(s) 71, 147, 496, 625, 647, 697
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 3 cut(s) 202, 238, 369
TaiI ACGT 3 cut(s) 21, 644, 693
TaqI TCGA 4 cut(s) 341, 362, 543, 687
TauI GCSGC 3 cut(s) 157, 281, 586
TfiI GAWTC 4 cut(s) 161, 269, 310, 441
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 666
TseFI GTSAC 2 cut(s) 427, 457
TseI GCWGC 2 cut(s) 275, 586
Tsp45I GTSAC 2 cut(s) 427, 457
TspDTI ATGAA 2 cut(s) 172, 373
TspGWI ACGGA 1 cut(s) 465
TspRI CASTG 1 cut(s) 666
Tth111I GACNNNGTC 1 cut(s) 649
VpaK11BI GGWCC 3 cut(s) 369, 394, 651
XceI RCATGY 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 1 cut(s) 609
ZraI GACGTC 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.