Rroxscaffold_6G00421820

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012167
Physical Location & Seq
Reverse (-)
42875524 .. 42877375
1852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00421820.1

Sequence Viewer

Length: 741 bp
ATGGCGGCGTCGGATAACCTAGCAGCGATGGAGCCGTGGGCGTACAGGCCGACGACGACGTTTGCGGACTCGTGGATCTCGGAGGCGTTTGCGAGGGACACTAAGGCGCTGACGATGGCGCTGCAGAAGTCGCTGGCGGATAACAGGAGCTCGGAATCTACGGATTCCGAGTTCTTGCCGTTTTTTGATACGTTTCAGGCGGAAACGACGGCTACGCCGACTGTTTCCGGGGTTTCGGGGTCGGATCCGGAGTCGGTTGCGGCGCCGAAGCGGCAGAGGAACGTGGTTCCCGTTTCGGGGGGCAAGGTGACGAAACGGAAGTCGCGCGCGTCGAAGCGGACGCAGACGACGTTCATCACGGCGGACCCGGCGAACTTCCGGCAGATGGTGCAGCAGGTGACGGGGGTGAGGTTTAACGGACAGCAGTTCTCTTCGATGCCGTCGATTGTCAAGCCCGAGCCGCAGAGACCCGGCGGCAATCGCTTACCGGGCGGCGGGTGCTTGCCGACGCTTGACACGTCGGCGTTGTTGTTCGACCACCATCAGCAGCAGCAGAGGCAGCAGTACCAGCAGCAGGTTGTGGGGCCCGCATCGGCAACGGGAGGAGGTGGACAGATGGGACCAATGCGCTATGGGGCGACGGTGGAGGTGGCTGAGGGTGGTGGTGGCGTCTCTGGCGGGGGATTAGGCTTTGACTCTTATTCGAGCTTTCCCACCTTGGAGTCGTGGAAGGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

246

Amino Acids

26.27

Weight (kDa)

8.73

Isoelectric Point (pI)

50.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 114 - 135 2.7e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 385
Acc36I ACCTGC 2 cut(s) 385, 565
AccB1I GGYRCC 1 cut(s) 262
AccII CGCG 3 cut(s) 325, 327, 329
AccIII TCCGGA 1 cut(s) 247
AclWI GGATC 3 cut(s) 83, 239, 252
AcyI GRCGYC 3 cut(s) 8, 263, 669
AfaI GTAC 2 cut(s) 44, 566
AfiI CCNNNNNNNGG 5 cut(s) 296, 297, 385, 494, 574
AflIII ACRYGT 1 cut(s) 516
AjiI CACGTC 1 cut(s) 519
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 2 cut(s) 150, 708
AluI AGCT 2 cut(s) 150, 708
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 2 cut(s) 460, 676
AlwI GGATC 3 cut(s) 83, 239, 252
Ama87I CYCGRG 1 cut(s) 455
Aor13HI TCCGGA 1 cut(s) 247
AoxI GGCC 2 cut(s) 47, 584
ApaI GGGCCC 1 cut(s) 588
ApeKI GCWGC 7 cut(s) 23, 121, 391, 547, 550, 559, 571
ArsI GACNNNNNNTTYG 2 cut(s) 305, 337
AspLEI GCGC 6 cut(s) 109, 121, 265, 327, 329, 630
AspS9I GGNCC 4 cut(s) 364, 584, 585, 620
AsuC2I CCSGG 4 cut(s) 229, 368, 471, 489
AsuHPI GGTGA 3 cut(s) 319, 409, 418
AvaI CYCGRG 1 cut(s) 455
AvaII GGWCC 2 cut(s) 364, 620
BaeGI GKGCMC 1 cut(s) 588
BamHI GGATCC 1 cut(s) 244
BanI GGYRCC 1 cut(s) 262
BanII GRGCYC 2 cut(s) 152, 588
BauI CACGAG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 654
BbvI GCAGC 7 cut(s) 35, 108, 403, 559, 562, 571, 583
BccI CCATC 5 cut(s) 22, 109, 379, 549, 610
BceAI ACGGC 5 cut(s) 19, 163, 225, 375, 424
BcgI CGANNNNNNTGC 2 cut(s) 103, 137
BcnI CCSGG 4 cut(s) 229, 368, 471, 489
BcoDI GTCTC 2 cut(s) 460, 676
BfaI CTAG 1 cut(s) 20
BfmI CTRYAG 1 cut(s) 122
BfoI RGCGCY 3 cut(s) 110, 122, 266
BfuAI ACCTGC 2 cut(s) 385, 565
BglI GCCNNNNNGGC 1 cut(s) 271
Bme1390I CCNGG 4 cut(s) 229, 368, 471, 489
Bme18I GGWCC 2 cut(s) 364, 620
BmeT110I CYCGRG 1 cut(s) 455
BmgBI CACGTC 1 cut(s) 519
BmgT120I GGNCC 4 cut(s) 364, 584, 585, 620
BmiI GGNNCC 8 cut(s) 33, 246, 264, 288, 366, 585, 586, 621
BmrFI CCNGG 4 cut(s) 229, 368, 471, 489
BmsI GCATC 2 cut(s) 426, 599
Bpu10I CCTNAGC 1 cut(s) 654
BpuMI CCSGG 4 cut(s) 229, 368, 471, 489
BsaHI GRCGYC 3 cut(s) 8, 263, 669
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 3 cut(s) 35, 228, 717
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 297, 385, 494, 574
BseAI TCCGGA 1 cut(s) 247
BseDI CCNNGG 3 cut(s) 35, 228, 717
BseLI CCNNNNNNNGG 5 cut(s) 296, 297, 385, 494, 574
BseMII CTCAG 1 cut(s) 645
BsePI GCGCGC 1 cut(s) 325
BseRI GAGGAG 1 cut(s) 618
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 7 cut(s) 35, 108, 403, 559, 562, 571, 583
BsgI GTGCAG 1 cut(s) 410
Bsh1236I CGCG 3 cut(s) 325, 327, 329
BshFI GGCC 2 cut(s) 49, 586
BshNI GGYRCC 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 152
BsiHKCI CYCGRG 1 cut(s) 455
BsiSI CCGG 6 cut(s) 228, 248, 368, 379, 471, 488
BslFI GGGAC 2 cut(s) 110, 633
BslI CCNNNNNNNGG 5 cut(s) 296, 297, 385, 494, 574
BsmAI GTCTC 2 cut(s) 460, 676
BsmBI CGTCTC 1 cut(s) 676
BsmFI GGGAC 2 cut(s) 110, 633
BsnI GGCC 2 cut(s) 49, 586
Bso31I GGTCTC 1 cut(s) 460
BsoBI CYCGRG 1 cut(s) 455
Bsp120I GGGCCC 1 cut(s) 584
Bsp1286I GDGCHC 2 cut(s) 152, 588
Bsp13I TCCGGA 1 cut(s) 247
Bsp143I GATC 2 cut(s) 75, 244
BspANI GGCC 2 cut(s) 49, 586
BspCNI CTCAG 1 cut(s) 646
BspEI TCCGGA 1 cut(s) 247
BspFNI CGCG 3 cut(s) 325, 327, 329
BspLI GGNNCC 8 cut(s) 33, 246, 264, 288, 366, 585, 586, 621
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 2 cut(s) 385, 565
BspPI GGATC 3 cut(s) 83, 239, 252
BspT107I GGYRCC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 460
BssECI CCNNGG 3 cut(s) 35, 228, 717
BssHII GCGCGC 1 cut(s) 325
BssMI GATC 2 cut(s) 75, 244
BssNI GRCGYC 3 cut(s) 8, 263, 669
BssSI CACGAG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 717
Bst2BI CACGAG 1 cut(s) 70
Bst4CI ACNGT 2 cut(s) 223, 643
Bst6I CTCTTC 1 cut(s) 436
BstACI GRCGYC 3 cut(s) 8, 263, 669
BstAPI GCANNNNNTGC 1 cut(s) 388
BstC8I GCNNGC 4 cut(s) 135, 327, 503, 588
BstDEI CTNAG 2 cut(s) 102, 654
BstDSI CCRYGG 1 cut(s) 35
BstFNI CGCG 3 cut(s) 325, 327, 329
BstH2I RGCGCY 3 cut(s) 110, 122, 266
BstHHI GCGC 6 cut(s) 109, 121, 265, 327, 329, 630
BstKTI GATC 2 cut(s) 78, 247
BstMAI GTCTC 2 cut(s) 460, 676
BstMBI GATC 2 cut(s) 75, 244
BstSCI CCNGG 4 cut(s) 227, 366, 469, 487
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 1 cut(s) 588
BstUI CGCG 3 cut(s) 325, 327, 329
BstV1I GCAGC 7 cut(s) 35, 108, 403, 559, 562, 571, 583
BstX2I RGATCY 2 cut(s) 75, 244
BstYI RGATCY 2 cut(s) 75, 244
BsuRI GGCC 2 cut(s) 49, 586
BtgI CCRYGG 1 cut(s) 35
BtgZI GCGATG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 519
BveI ACCTGC 2 cut(s) 385, 565
Cac8I GCNNGC 4 cut(s) 135, 327, 503, 588
CfoI GCGC 6 cut(s) 109, 121, 265, 327, 329, 630
Cfr13I GGNCC 4 cut(s) 364, 584, 585, 620
CseI GACGC 4 cut(s) 318, 349, 517, 658
Csp6I GTAC 2 cut(s) 43, 565
CviAII CATG 1 cut(s) 736
CviQI GTAC 2 cut(s) 43, 565
DdeI CTNAG 2 cut(s) 102, 654
DinI GGCGCC 1 cut(s) 264
DpnI GATC 2 cut(s) 77, 246
DpnII GATC 2 cut(s) 75, 244
Eam1104I CTCTTC 1 cut(s) 436
EarI CTCTTC 1 cut(s) 436
EciI GGCGGA 3 cut(s) 152, 215, 377
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 717
Eco24I GRGCYC 2 cut(s) 152, 588
Eco31I GGTCTC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 364, 620
Eco53kI GAGCTC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 455
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 717
EcoT38I GRGCYC 2 cut(s) 152, 588
EgeI GGCGCC 1 cut(s) 264
EheI GGCGCC 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 717
Esp3I CGTCTC 1 cut(s) 676
FaeI CATG 1 cut(s) 739
FaiI YATR 2 cut(s) 633, 737
FaqI GGGAC 2 cut(s) 110, 633
FatI CATG 1 cut(s) 735
FauI CCCGC 3 cut(s) 488, 595, 671
FriOI GRGCYC 2 cut(s) 152, 588
FspBI CTAG 1 cut(s) 20
GlaI GCGC 6 cut(s) 108, 120, 264, 326, 328, 629
HaeII RGCGCY 3 cut(s) 110, 122, 266
HaeIII GGCC 2 cut(s) 49, 586
HapII CCGG 6 cut(s) 228, 248, 368, 379, 471, 488
HgaI GACGC 4 cut(s) 318, 349, 517, 658
HhaI GCGC 6 cut(s) 109, 121, 265, 327, 329, 630
Hin1I GRCGYC 3 cut(s) 8, 263, 669
Hin1II CATG 1 cut(s) 739
Hin6I GCGC 6 cut(s) 107, 119, 263, 325, 327, 628
HinP1I GCGC 6 cut(s) 107, 119, 263, 325, 327, 628
HinfI GANTC 6 cut(s) 68, 155, 164, 251, 695, 722
HpaII CCGG 6 cut(s) 228, 248, 368, 379, 471, 488
HphI GGTGA 3 cut(s) 319, 409, 418
Hpy166II GTNNAC 1 cut(s) 611
Hpy188I TCNGA 5 cut(s) 13, 82, 154, 169, 244
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 611
HpyAV CCTTC 1 cut(s) 724
HpyCH4III ACNGT 2 cut(s) 223, 643
HpyCH4IV ACGT 5 cut(s) 59, 191, 282, 350, 518
HpyCH4V TGCA 2 cut(s) 124, 391
HpyF3I CTNAG 2 cut(s) 102, 654
HpySE526I ACGT 5 cut(s) 59, 191, 282, 350, 518
Hsp92I GRCGYC 3 cut(s) 8, 263, 669
Hsp92II CATG 1 cut(s) 739
HspAI GCGC 6 cut(s) 107, 119, 263, 325, 327, 628
KasI GGCGCC 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 75, 244
LmnI GCTCC 2 cut(s) 31, 147
Lsp1109I GCAGC 7 cut(s) 35, 108, 403, 559, 562, 571, 583
LweI GCATC 2 cut(s) 426, 599
MaeI CTAG 1 cut(s) 20
MaeII ACGT 5 cut(s) 59, 191, 282, 350, 518
MaeIII GTNAC 2 cut(s) 307, 397
MalI GATC 2 cut(s) 77, 246
MauBI CGCGCGCG 1 cut(s) 325
MboI GATC 2 cut(s) 75, 244
MboII GAAGA 1 cut(s) 423
MflI RGATCY 2 cut(s) 75, 244
MhlI GDGCHC 2 cut(s) 152, 588
Mly113I GGCGCC 1 cut(s) 263
MlyI GAGTC 4 cut(s) 62, 260, 689, 731
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 9 cut(s) 76, 87, 270, 402, 549, 596, 599, 640, 649
MroI TCCGGA 1 cut(s) 247
MseI TTAA 1 cut(s) 414
MspI CCGG 6 cut(s) 228, 248, 368, 379, 471, 488
MspR9I CCNGG 4 cut(s) 229, 368, 471, 489
MvnI CGCG 3 cut(s) 325, 327, 329
NarI GGCGCC 1 cut(s) 263
NciI CCSGG 4 cut(s) 229, 368, 471, 489
NdeII GATC 2 cut(s) 75, 244
NlaIII CATG 1 cut(s) 739
NlaIV GGNNCC 8 cut(s) 33, 246, 264, 288, 366, 585, 586, 621
NmuCI GTSAC 2 cut(s) 307, 397
PaqCI CACCTGC 1 cut(s) 385
PauI GCGCGC 1 cut(s) 325
PcsI WCGNNNNNNNCGW 6 cut(s) 215, 288, 329, 347, 440, 515
PfeI GAWTC 2 cut(s) 155, 164
PleI GAGTC 4 cut(s) 62, 259, 689, 730
PluTI GGCGCC 1 cut(s) 266
PpsI GAGTC 4 cut(s) 62, 259, 689, 730
Psp124BI GAGCTC 1 cut(s) 152
PspN4I GGNNCC 8 cut(s) 33, 246, 264, 288, 366, 585, 586, 621
PspOMI GGGCCC 1 cut(s) 584
PspPI GGNCC 4 cut(s) 364, 584, 585, 620
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 2 cut(s) 75, 244
PteI GCGCGC 1 cut(s) 325
RsaI GTAC 2 cut(s) 44, 566
RsaNI GTAC 2 cut(s) 43, 565
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 1 cut(s) 414
Sau3AI GATC 2 cut(s) 75, 244
Sau96I GGNCC 4 cut(s) 364, 584, 585, 620
SchI GAGTC 4 cut(s) 62, 260, 689, 731
ScrFI CCNGG 4 cut(s) 229, 368, 471, 489
SduI GDGCHC 2 cut(s) 152, 588
SfaNI GCATC 2 cut(s) 426, 599
SfcI CTRYAG 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 264
SinI GGWCC 2 cut(s) 364, 620
SspDI GGCGCC 1 cut(s) 262
SspMI CTAG 1 cut(s) 20
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 4 cut(s) 227, 366, 469, 487
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 2 cut(s) 223, 643
TaiI ACGT 5 cut(s) 62, 194, 285, 353, 521
TaqI TCGA 5 cut(s) 332, 434, 443, 534, 704
TauI GCSGC 6 cut(s) 8, 263, 274, 463, 477, 495
TfiI GAWTC 2 cut(s) 155, 164
Tru1I TTAA 1 cut(s) 414
Tru9I TTAA 1 cut(s) 414
TseFI GTSAC 2 cut(s) 307, 397
TseI GCWGC 7 cut(s) 23, 121, 391, 547, 550, 559, 571
Tsp45I GTSAC 2 cut(s) 307, 397
TspDTI ATGAA 1 cut(s) 343
TspGWI ACGGA 3 cut(s) 176, 331, 432
VpaK11BI GGWCC 2 cut(s) 364, 620
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.