FvH4_6g07790

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012167
Physical Location & Seq
Forward (+)
4662378 .. 4663794
1417 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g07790.t1

Sequence Viewer

Length: 747 bp
ATGGCGGCGTCGGATAACTTGGCAGCGATGGAGCCGTGGGTGTACAGGCCGACGACGACGTTCGCGGACTCGTGGATCTCGGAGGCGTTTACGAGGGACAGTAAGGCGCTGACCATGGCGCTGCAGAAGTCGTTGTCGGAAAACAAGAGCTCGGACTCTGCGGATTCCGAGTTCTTGCCGTTTTTCGATACTTTCCAGGCGGCGACGCCGACCGTTTCGGGGGTGTCGGGGTCGGATCCGGAGACTTCGGTGGCGGCGCCGACGAAGCGGCAGCGGAACGCGGTTCCGGTTTCCGGGGGAAAGGTGGCGAAACGGAAGTCGCGGGCGTCGAAGCGGACGCAGACGACGTTCATCACGGCGGACCCGGCGAACTTCCGGCAGATGGTGCAGCAGGTGACGGGAGTGAGGTTCAGTGGGCAGCAGTTCTCTGGTTCTTCGTTGGGGTCGACGATTGTGAAGCCGGAGCCGCAGAGACCCGGCAGCGGCGGGGTAGCCGGGGCTCGGTTACCGACGCTTGACACGTCGGCGTTTCTGTTTGACCGGCATCAGCAGCAGCAGAGGCAGCAGTACCAACAGCAGCAGGTGGTAGGGCCCGCGGTGGCGACGGGAGGAGGAGTGGGGCCAATGTGTTATGGGGCCCGGAGGGTTGAGGTGGCTGAGGGTGGTAGCGTCTCTGGCGGGGGATTGGGGTTTGACTCCTATTCGAGCTTGAGCTTTCCCACTTTGGAGTCGTGGAAGGTGATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VQ

Protein Analysis

249

Amino Acids

26.39

Weight (kDa)

9.47

Isoelectric Point (pI)

47.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 113 - 134 2.7e-09 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012167)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41010 AT3G56880
fragaria_vesca FvH4_6g07790
malus_domestica MD04G1191900.v1.1
prunus_persica Prupe.6G310500_v2.0.a1
pyrus_communis pycom04g16940 pycom12g19130
rosa_chinensis RchiOBHm_Chr3g0457501
rosa_laevigata RLG00000025218
rosa_multiflora Rmu_co8346421.1_g000001 Rmu_sc0007404.1_g000016 Rmu_sc0038243.1_g000001
rosa_roxburghii Rroxscaffold_6G00421820
rosa_rugosa Rorug03G0020500
rosa_samantha Rh3AG081300 Rh3BG083400 Rh3CG083600 Rh3DG084800
rosa_wichuraiana Rw3G006970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 382, 571
Acc36I ACCTGC 2 cut(s) 382, 571
AccB1I GGYRCC 1 cut(s) 256
AccI GTMKAC 1 cut(s) 446
AccII CGCG 4 cut(s) 65, 281, 322, 596
AccIII TCCGGA 1 cut(s) 238
AclWI GGATC 3 cut(s) 83, 230, 243
AcyI GRCGYC 4 cut(s) 8, 206, 257, 326
AfaI GTAC 2 cut(s) 44, 569
AfiI CCNNNNNNNGG 5 cut(s) 219, 293, 382, 482, 501
AflIII ACRYGT 1 cut(s) 519
AjiI CACGTC 1 cut(s) 522
AjnI CCWGG 1 cut(s) 195
AloI GAACNNNNNNTCC 2 cut(s) 155, 187
AluBI AGCT 3 cut(s) 150, 708, 714
AluI AGCT 3 cut(s) 150, 708, 714
Alw21I GWGCWC 1 cut(s) 152
Alw26I GTCTC 3 cut(s) 236, 466, 676
AlwI GGATC 3 cut(s) 83, 230, 243
Aor13HI TCCGGA 1 cut(s) 238
AoxI GGCC 4 cut(s) 47, 590, 620, 636
ApaI GGGCCC 2 cut(s) 594, 640
ArsI GACNNNNNNTTYG 2 cut(s) 302, 334
AspLEI GCGC 3 cut(s) 109, 121, 259
AspS9I GGNCC 6 cut(s) 361, 590, 591, 620, 636, 637
AsuC2I CCSGG 5 cut(s) 295, 365, 477, 496, 640
AsuHPI GGTGA 1 cut(s) 406
AvaII GGWCC 1 cut(s) 361
BaeGI GKGCMC 2 cut(s) 594, 640
BamHI GGATCC 1 cut(s) 235
BanI GGYRCC 1 cut(s) 256
BanII GRGCYC 4 cut(s) 152, 502, 594, 640
BauI CACGAG 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 152
BbvCI CCTCAGC 1 cut(s) 657
BccI CCATC 2 cut(s) 22, 376
BceAI ACGGC 3 cut(s) 19, 163, 372
BciT130I CCWGG 1 cut(s) 197
BcnI CCSGG 5 cut(s) 295, 365, 477, 496, 640
BcoDI GTCTC 3 cut(s) 236, 466, 676
BfmI CTRYAG 1 cut(s) 122
BfoI RGCGCY 3 cut(s) 110, 122, 260
BfuAI ACCTGC 2 cut(s) 382, 571
Bme1390I CCNGG 6 cut(s) 197, 295, 365, 477, 496, 640
Bme18I GGWCC 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 522
BmgT120I GGNCC 6 cut(s) 361, 590, 591, 620, 636, 637
BmrFI CCNGG 6 cut(s) 197, 295, 365, 477, 496, 640
BmsI GCATC 1 cut(s) 553
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 1 cut(s) 730
BpuMI CCSGG 5 cut(s) 295, 365, 477, 496, 640
BsaHI GRCGYC 4 cut(s) 8, 206, 257, 326
BsaI GGTCTC 1 cut(s) 466
BsaJI CCNNGG 5 cut(s) 35, 114, 294, 495, 594
BsaWI WCCGGW 2 cut(s) 238, 286
BsaXI ACNNNNNCTCC 2 cut(s) 600, 630
Bsc4I CCNNNNNNNGG 5 cut(s) 219, 293, 382, 482, 501
Bse118I RCCGGY 1 cut(s) 540
BseAI TCCGGA 1 cut(s) 238
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 5 cut(s) 35, 114, 294, 495, 594
BseLI CCNNNNNNNGG 5 cut(s) 219, 293, 382, 482, 501
BseMII CTCAG 1 cut(s) 648
BseRI GAGGAG 2 cut(s) 624, 627
BseSI GKGCMC 2 cut(s) 594, 640
BsgI GTGCAG 1 cut(s) 407
Bsh1236I CGCG 4 cut(s) 65, 281, 322, 596
Bsh1285I CGRYCG 1 cut(s) 213
BshFI GGCC 4 cut(s) 49, 592, 622, 638
BshNI GGYRCC 1 cut(s) 256
BsiEI CGRYCG 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 152
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 5 cut(s) 219, 293, 382, 482, 501
BsmAI GTCTC 3 cut(s) 236, 466, 676
BsmBI CGTCTC 1 cut(s) 676
BsmFI GGGAC 1 cut(s) 110
BsnI GGCC 4 cut(s) 49, 592, 622, 638
Bso31I GGTCTC 1 cut(s) 466
Bsp120I GGGCCC 2 cut(s) 590, 636
Bsp1286I GDGCHC 4 cut(s) 152, 502, 594, 640
Bsp13I TCCGGA 1 cut(s) 238
Bsp1407I TGTACA 1 cut(s) 42
Bsp143I GATC 2 cut(s) 75, 235
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 4 cut(s) 49, 592, 622, 638
BspCNI CTCAG 1 cut(s) 649
BspEI TCCGGA 1 cut(s) 238
BspFNI CGCG 4 cut(s) 65, 281, 322, 596
BspMAI CTGCAG 1 cut(s) 126
BspMI ACCTGC 2 cut(s) 382, 571
BspPI GGATC 3 cut(s) 83, 230, 243
BspT107I GGYRCC 1 cut(s) 256
BspTNI GGTCTC 1 cut(s) 466
BsrFI RCCGGY 1 cut(s) 540
BsrGI TGTACA 1 cut(s) 42
BssAI RCCGGY 1 cut(s) 540
BssECI CCNNGG 5 cut(s) 35, 114, 294, 495, 594
BssMI GATC 2 cut(s) 75, 235
BssNI GRCGYC 4 cut(s) 8, 206, 257, 326
BssSI CACGAG 1 cut(s) 70
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 70
Bst2UI CCWGG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 101, 214
BstACI GRCGYC 4 cut(s) 8, 206, 257, 326
BstAPI GCANNNNNTGC 1 cut(s) 385
BstAUI TGTACA 1 cut(s) 42
BstC8I GCNNGC 2 cut(s) 324, 594
BstDEI CTNAG 1 cut(s) 657
BstDSI CCRYGG 3 cut(s) 35, 114, 594
BstEII GGTNACC 1 cut(s) 504
BstFNI CGCG 4 cut(s) 65, 281, 322, 596
BstH2I RGCGCY 3 cut(s) 110, 122, 260
BstHHI GCGC 3 cut(s) 109, 121, 259
BstKTI GATC 2 cut(s) 78, 238
BstMAI GTCTC 3 cut(s) 236, 466, 676
BstMBI GATC 2 cut(s) 75, 235
BstMCI CGRYCG 1 cut(s) 213
BstMWI GCNNNNNNNGC 8 cut(s) 265, 365, 385, 466, 550, 559, 562, 675
BstNI CCWGG 1 cut(s) 197
BstPI GGTNACC 1 cut(s) 504
BstSCI CCNGG 6 cut(s) 195, 293, 363, 475, 494, 638
BstSFI CTRYAG 1 cut(s) 122
BstSLI GKGCMC 2 cut(s) 594, 640
BstUI CGCG 4 cut(s) 65, 281, 322, 596
BstX2I RGATCY 2 cut(s) 75, 235
BstYI RGATCY 2 cut(s) 75, 235
BsuRI GGCC 4 cut(s) 49, 592, 622, 638
BtgI CCRYGG 3 cut(s) 35, 114, 594
BtgZI GCGATG 1 cut(s) 41
BtrI CACGTC 1 cut(s) 522
BtsIMutI CAGTG 1 cut(s) 418
BveI ACCTGC 2 cut(s) 382, 571
Cac8I GCNNGC 2 cut(s) 324, 594
CfoI GCGC 3 cut(s) 109, 121, 259
Cfr10I RCCGGY 1 cut(s) 540
Cfr13I GGNCC 6 cut(s) 361, 590, 591, 620, 636, 637
Cfr42I CCGCGG 1 cut(s) 597
CseI GACGC 5 cut(s) 214, 315, 346, 520, 658
Csp6I GTAC 2 cut(s) 43, 568
CviAII CATG 1 cut(s) 115
CviQI GTAC 2 cut(s) 43, 568
DdeI CTNAG 1 cut(s) 657
DinI GGCGCC 1 cut(s) 258
DpnI GATC 2 cut(s) 77, 237
DpnII GATC 2 cut(s) 75, 235
EciI GGCGGA 1 cut(s) 374
Ecl136II GAGCTC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 4 cut(s) 152, 502, 594, 640
Eco31I GGTCTC 1 cut(s) 466
Eco47I GGWCC 1 cut(s) 361
Eco53kI GAGCTC 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 504
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 2 cut(s) 590, 636
EcoO65I GGTNACC 1 cut(s) 504
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 4 cut(s) 152, 502, 594, 640
EgeI GGCGCC 1 cut(s) 258
EheI GGCGCC 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 114
Esp3I CGTCTC 1 cut(s) 676
FaeI CATG 1 cut(s) 118
FaiI YATR 2 cut(s) 116, 633
FaqI GGGAC 1 cut(s) 110
FatI CATG 1 cut(s) 114
FauI CCCGC 4 cut(s) 315, 479, 601, 671
FblI GTMKAC 1 cut(s) 446
FriOI GRGCYC 4 cut(s) 152, 502, 594, 640
GlaI GCGC 3 cut(s) 108, 120, 258
HaeII RGCGCY 3 cut(s) 110, 122, 260
HaeIII GGCC 4 cut(s) 49, 592, 622, 638
HgaI GACGC 5 cut(s) 214, 315, 346, 520, 658
HhaI GCGC 3 cut(s) 109, 121, 259
Hin1I GRCGYC 4 cut(s) 8, 206, 257, 326
Hin1II CATG 1 cut(s) 118
Hin6I GCGC 3 cut(s) 107, 119, 257
HinP1I GCGC 3 cut(s) 107, 119, 257
HincII GTYRAC 1 cut(s) 447
HindII GTYRAC 1 cut(s) 447
HinfI GANTC 5 cut(s) 68, 155, 164, 695, 728
HphI GGTGA 1 cut(s) 406
Hpy166II GTNNAC 3 cut(s) 43, 90, 447
Hpy188I TCNGA 6 cut(s) 13, 82, 139, 154, 169, 235
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 3 cut(s) 43, 90, 447
HpyAV CCTTC 1 cut(s) 730
HpyCH4III ACNGT 2 cut(s) 101, 214
HpyCH4IV ACGT 3 cut(s) 59, 347, 521
HpyCH4V TGCA 2 cut(s) 124, 388
HpyF10VI GCNNNNNNNGC 8 cut(s) 265, 365, 385, 466, 550, 559, 562, 675
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 3 cut(s) 59, 347, 521
Hsp92I GRCGYC 4 cut(s) 8, 206, 257, 326
Hsp92II CATG 1 cut(s) 118
HspAI GCGC 3 cut(s) 107, 119, 257
KasI GGCGCC 1 cut(s) 256
Kpn2I TCCGGA 1 cut(s) 238
KspI CCGCGG 1 cut(s) 597
Kzo9I GATC 2 cut(s) 75, 235
LmnI GCTCC 2 cut(s) 31, 463
LweI GCATC 1 cut(s) 553
MaeII ACGT 3 cut(s) 59, 347, 521
MaeIII GTNAC 2 cut(s) 394, 504
MalI GATC 2 cut(s) 77, 237
MboI GATC 2 cut(s) 75, 235
MboII GAAGA 1 cut(s) 426
MflI RGATCY 2 cut(s) 75, 235
MhlI GDGCHC 4 cut(s) 152, 502, 594, 640
Mly113I GGCGCC 1 cut(s) 257
MlyI GAGTC 4 cut(s) 62, 149, 689, 737
MmeI TCCRAC 2 cut(s) 117, 213
MnlI CCTC 9 cut(s) 76, 87, 399, 552, 602, 605, 636, 643, 652
MroI TCCGGA 1 cut(s) 238
MspA1I CMGCKG 3 cut(s) 274, 483, 596
MspR9I CCNGG 6 cut(s) 197, 295, 365, 477, 496, 640
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 4 cut(s) 65, 281, 322, 596
MwoI GCNNNNNNNGC 8 cut(s) 265, 365, 385, 466, 550, 559, 562, 675
NarI GGCGCC 1 cut(s) 257
NciI CCSGG 5 cut(s) 295, 365, 477, 496, 640
NcoI CCATGG 1 cut(s) 114
NdeII GATC 2 cut(s) 75, 235
NlaIII CATG 1 cut(s) 118
NmuCI GTSAC 1 cut(s) 394
PaqCI CACCTGC 2 cut(s) 382, 571
PcsI WCGNNNNNNNCGW 4 cut(s) 326, 344, 443, 518
PfeI GAWTC 1 cut(s) 164
PleI GAGTC 4 cut(s) 62, 149, 689, 736
PluTI GGCGCC 1 cut(s) 260
PpsI GAGTC 4 cut(s) 62, 149, 689, 736
Psp124BI GAGCTC 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 195
PspEI GGTNACC 1 cut(s) 504
PspGI CCWGG 1 cut(s) 195
PspOMI GGGCCC 2 cut(s) 590, 636
PspPI GGNCC 6 cut(s) 361, 590, 591, 620, 636, 637
PstI CTGCAG 1 cut(s) 126
PsuI RGATCY 2 cut(s) 75, 235
RsaI GTAC 2 cut(s) 44, 569
RsaNI GTAC 2 cut(s) 43, 568
SacI GAGCTC 1 cut(s) 152
SacII CCGCGG 1 cut(s) 597
SalI GTCGAC 1 cut(s) 445
Sau3AI GATC 2 cut(s) 75, 235
Sau96I GGNCC 6 cut(s) 361, 590, 591, 620, 636, 637
SchI GAGTC 4 cut(s) 62, 149, 689, 737
ScrFI CCNGG 6 cut(s) 197, 295, 365, 477, 496, 640
SduI GDGCHC 4 cut(s) 152, 502, 594, 640
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 1 cut(s) 122
SfoI GGCGCC 1 cut(s) 258
Sfr303I CCGCGG 1 cut(s) 597
SgrBI CCGCGG 1 cut(s) 597
SinI GGWCC 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 709
SmoI CTYRAG 1 cut(s) 709
SspDI GGCGCC 1 cut(s) 256
SstI GAGCTC 1 cut(s) 152
StyD4I CCNGG 6 cut(s) 195, 293, 363, 475, 494, 638
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 101, 214
TaiI ACGT 3 cut(s) 62, 350, 524
TaqI TCGA 4 cut(s) 186, 329, 446, 704
TatI WGTACW 1 cut(s) 42
TauI GCSGC 6 cut(s) 8, 203, 257, 271, 469, 486
TfiI GAWTC 1 cut(s) 164
TscAI CASTG 1 cut(s) 418
TseFI GTSAC 1 cut(s) 394
Tsp45I GTSAC 1 cut(s) 394
TspDTI ATGAA 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 328
TspRI CASTG 1 cut(s) 418
VpaK11BI GGWCC 1 cut(s) 361
XmiI GTMKAC 1 cut(s) 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.